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Report for Sequence Feature Glyma.05g090600

Feature Type:gene_model
Chromosome:Gm05
Start:20572058
stop:20575742
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g090600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G50560.1AT NAD(P)-binding Rossmann-fold superfamily protein JGI N/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
KOG1014 KOG 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 JGI N/AIEA
PTHR24320Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24320:SF40Panther SUBFAMILY NOT NAMED JGI N/AIEA
PF00106PFAM short chain dehydrogenase JGI N/AIEA
PWY-5129SoyCyc9 sphingolipid biosynthesis (plants) Plant Metabolic Network ISS
GN7V-67003SoyCyc9-rxn 3-dehydrosphinganine reductase Plant Metabolic Network ISS

Expression Patterns of Glyma.05g090600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.05g090600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g10390 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g090600
>Glyma.05g090600.1 sequence-type=CDS polypeptide=Glyma.05g090600.1.p locus=Glyma.05g090600 ID=Glyma.05g090600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGAAGCATGGCAAGCTCGGCTTCCTCGCGAGGCATTGCAGCCATCGTCGGTGTGGGCCCCAACCTTGGCCTCTCCATCGCTCGCAAGTTCGCTCACGAAGGCTACACAGTTGCCATCCTCGCGCGTGACTTGGGGAGGTTGTCAAGATTTGCTGACGAAATAGCGAGGGAAGAGAAGGCGCAGGTTTTTGCTATAAGAATAGACTGTTCCGATTCAAGAAGCGTGAGAGAGGCATTTGAAGGAGTTCTCTCTCTGGGGTTCGTGGAAATTCTCGTCTACAATGCTTACCAGCCATTACCTTGGTACCCCACCTCCTTCCAAGACCTTCGCGTTGATTCCTTCGAAAAATCCCTCGCCATTTCTTCCGTCGGTGCCTTCCACTGCGCTCAACAGGTGCTGTCGGGCATGGTTGAAAGGGGAAAGGGAACGATTCTCTTCACTGGCTGCTCCGCTTCTCTGAACGGCATTGTTGGATACTCTGAACTATGCTGTGGGAAATTCGCTTTGAGAGCACTATCGCAATGTTTGGCCAAGGAATTTCAACCTCAGGGAGTGCACGTAGCTCATGTTATCATTGACGGTGTCATTGGCCCACCCAGAGGACCAATGTTGACGACGACGTCATCATCGTCGCAGAGGAGAAATTCATTGGGGGAGCAAAGCAGTGGAGTAGTGGGAGGAGGTGAGGGTACTATGGACCCGGACTCACTCGCTCAAACCTTCTGGCACTTGCACGTTCAGGACCGAAACGCTTGGACCCAGGAGATGGATCTTCGCTCACCCTCTGCTAGATTCTTCTAG
Predicted protein sequences of Glyma.05g090600
>Glyma.05g090600.1.p sequence-type=predicted peptide transcript=Glyma.05g090600.1 locus=Glyma.05g090600 ID=Glyma.05g090600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRSMASSASSRGIAAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRIDCSDSRSVREAFEGVLSLGFVEILVYNAYQPLPWYPTSFQDLRVDSFEKSLAISSVGAFHCAQQVLSGMVERGKGTILFTGCSASLNGIVGYSELCCGKFALRALSQCLAKEFQPQGVHVAHVIIDGVIGPPRGPMLTTTSSSSQRRNSLGEQSSGVVGGGEGTMDPDSLAQTFWHLHVQDRNAWTQEMDLRSPSARFF*






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