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Report for Sequence Feature Glyma.05g079100

Feature Type:gene_model
Chromosome:Gm05
Start:10836253
stop:10840901
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g079100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G27390.1AT translocase outer membrane 20-2 JGI N/AIEA
AT3G27080.1AT translocase of outer membrane 20 kDa subunit 3 JGI N/AIEA
GO:0045040GO-bp protein import into mitochondrial outer membrane EnsemblGenomesN/AIEA
GO:0045040GO-bp protein import into mitochondrial outer membrane JGI N/AIEA
GO:0005742GO-cc mitochondrial outer membrane translocase complex EnsemblGenomesN/AIEA
GO:0005742GO-cc mitochondrial outer membrane translocase complex JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
PTHR10790Panther FAMILY NOT NAMED JGI N/AIEA
PTHR10790:SF9Panther JGI N/AIEA
PF06552PFAM Plant specific mitochondrial import receptor subunit TOM20 JGI N/AIEA

Expression Patterns of Glyma.05g079100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g079100 not represented in the dataset
Glyma.05g079100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.05g079100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g14300 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g079100
>Glyma.05g079100.2 sequence-type=transcript locus=Glyma.05g079100 ID=Glyma.05g079100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTCTTTTTCTTTTCCGACCACGTCTCTCCACGTAGGTCTGTACTAGTCACACTATCCTCTTTCATAAGAGGAAGTGCAGAGATTCATTGACTTTCAaaaacccaaaaccctaaaaagcgcaagaaaacaaaatccccaaaATATCTCTCGCTCTGAAACCGCCATGGATTTGCAGCAGAGCGAGTTCGATCGCCTCCTGTTCTTCGAGCACGCTCGTAAGGCCGCAGAAGCCGAATACGAGAAGAACCCTCTCGACGCTGATAACTTAACAAGATGGGGTGGAGCTTTATTAGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGAGGCTGTTTCAAAGCTAGAGGAGGCGCTTGCGGTGAATCCCAAGAAGCATGACACTCTTTGGTGCCTGGGAAATGCTCACACTTCACAAGCATTTTTAATTCCAGACCAGGACGAGGCCAAGGTTTATTTTGATAAGGCAGCTGAGTACTTTCAGCAAGCTGTTGATGAGGATCCTTCGAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGGCTCCTGAGCTGCATGTAGAAATCCATAAGCATGGATTTGGTcagcagcagcagcagcaggcagcagcaacagcTGGATCTTCTACTTCTGCTTCGACAAATGTAATACTTAAAAGATTTTGTTGCCTGTCTTTACCCTGTGATTATTCTGTATCAGGCTTTTGTAGCTAATTTGTTTGTATATTTTTCTCATGATTTTTCTGAGATTTAATAATTTTAAATTTAAAATTTCTTCCATATATGCAATGTTCTCTGACTGAGGACACATTCAAGGAGTGTTGATGCAGTGAGAAATAAAGGAGTTTGTTGACTGGAATGTATGGTGTCATTTCGTTGACAATTAATGGTCTTAAATGTTAATTTTTGTATGATAATTTTGTTTTTTTGTAGTGAGTAGGAACTAGGTGACTAAGGTATGCGGGGCACAAATTTTATAGGATGGGCTCATACTTTCTATCATCACAGCACTTAATTGACTTTGTATGCATCTTAATTATCTAAGTGTATACAGGCTGAGATAGATTGGATTAATGTCGGTGGATTTTTTCTTTGAAGAGAATACTATATGTATTTTATTTTTTTGATAAAAAAATAGAGAACTAATCTTTCAACTGGTCTTGATATAAGTGCTATTTGTATATTTTGGGTTAGACTTGGCTCTTGCACTGCTAGTTATTTATATCTGTATTTTGGTTAAGCACGCCTTGTGCTACAAAAATCGCATTGAAGGCAGATAGCGTCTGATCTTCGTATTTGAGTTGTGTTCATTTATCACCTAATTTGTTTGGTTATTTTTCAGACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGATAATTCTGGCAGTCGGCATTGTTGCATGGGTGGGATTTGCAAAATCGAACCTGCCACCACCTCCCCCTCCACCTCCTCGATAAGTGGAGCCATTTGATTTTATCTCATACATTATTGATTATTGAGAATGATATTTGATTTCGGGCAGTGCCGTTTATTTAGTTTTTTTTGACAGTAGTAATGGTTGTCATGGGGCTTATCTTATCCATCATGCGAAATTTTATCTTACCGTGGGTTGAGCAGTTAAAATGTCCGGCTTAGATCTTTGCTAGTATTTGCAAAATCGAAATCATTGCCATTTGCCATCAGGCAAGTATTGAATATAATAAGAATTTTGCTGCAAGGTTTCGGTTTTTCATTGATGGCTCAACTTAATTGAGCTCTTTTTTGGAGGACAGTTGCTGGGTGGTTGCATAGAAGCATTGTAAGTAGTTGCATTAAGTCATTGGTATTAGACACCGTTGCTAG

>Glyma.05g079100.3 sequence-type=transcript locus=Glyma.05g079100 ID=Glyma.05g079100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTCTTTTTCTTTTCCGACCACGTCTCTCCACGTAGGTCTGTACTAGTCACACTATCCTCTTTCATAAGAGGAAGTGCAGAGATTCATTGACTTTCAaaaacccaaaaccctaaaaagcgcaagaaaacaaaatccccaaaATATCTCTCGCTCTGAAACCGCCATGGATTTGCAGCAGAGCGAGTTCGATCGCCTCCTGTTCTTCGAGCACGCTCGTAAGGCCGCAGAAGCCGAATACGAGAAGAACCCTCTCGACGCTGATAACTTAACAAGATGGGGTGGAGCTTTATTAGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGAGGCTGTTTCAAAGCTAGAGGAGGCGCTTGCGGTGAATCCCAAGAAGCATGACACTCTTTGGTGCCTGGGAAATGCTCACACTTCACAAGCATTTTTAATTCCAGACCAGGACGAGGCCAAGGTTTATTTTGATAAGGCAGCTGAGTACTTTCAGCAAGCTGTTGATGAGGATCCTTCGAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGgtatgttctgtattgtagtgtattagttttgtaCCATTATCATATTGCCTAAATTACTCATTTGTCATCTACTTTGTTTTTGGAAGCTGCAATGGAATATAGAAATGGGTGTTACAATTTGTTCAGTTTTGTTGTCATTGGTTTTTTCATCTGTTTCATGTCTTGATTGACAAAACTAAGTGAGATATATGGATTTTAAATGCTTTTACAACACTGAGTAAGGAGCCCTGCAAATACGGTGTGGTAATTTGTAAAATGGTTCTGATATCTGTGTTTATGCATGAAAGTATGAGACTGCCTTGACTTGTTGATTGTGAATAAATCCATGTTGACCAGATTTGCATGAATCTTGATGCTATTCATGTGATTTGATCCCAATTCAGAAAGCTGCCATTATAGATCACACAATTGTTTTGGGAGAGTCACCAGATTTGCATTTTCTGTGATGTGTACGAATCTTGGACCAACAGGTTGCATCTTTTATCCAGGTTGTGTCCTTGGCAACCCAATTTCAAGAGCCAACTATTTTTTTCCCAAAGTTTTTTATGAAGGCTCCTGAGCTGCATGTAGAAATCCATAAGCATGGATTTGGTcagcagcagcagcagcaggcagcagcaacagcTGGATCTTCTACTTCTGCTTCGACAAATACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGATAATTCTGGCAGTCGGCATTGTTGCATGGGTGGGATTTGCAAAATCGAACCTGCCACCACCTCCCCCTCCACCTCCTCGATAAGTGGAGCCATTTGATTTTATCTCATACATTATTGATTATTGAGAATGATATTTGATTTCGGGCAGTGCCGTTTATTTAGTTTTTTTTGACAGTAGTAATGGTTGTCATGGGGCTTATCTTATCCATCATGCGAAATTTTATCTTACCGTGGGTTGAGCAGTTAAAATGTCCGGCTTAGATCTTTGCTAGTATTTGCAAAATCGAAATCATTGCCATTTGCCATCAGGCAAGTATTGAATATAATAAGAATTTTGCTGCAAGGTTTCGGTTTTTCATTGATGGCTCAACTTAATTGAGCTCTTTTTTGGAGGACAGTTGCTGGGTGGTTGCATAGAAGCATTGTAAGTAGTTGCATTAAGTCATTGGTATTAGACACCGTTGCTAG
Coding sequences of Glyma.05g079100
>Glyma.05g079100.1 sequence-type=CDS polypeptide=Glyma.05g079100.1.p locus=Glyma.05g079100 ID=Glyma.05g079100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTTGCAGCAGAGCGAGTTCGATCGCCTCCTGTTCTTCGAGCACGCTCGTAAGGCCGCAGAAGCCGAATACGAGAAGAACCCTCTCGACGCTGATAACTTAACAAGATGGGGTGGAGCTTTATTAGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGAGGCTGTTTCAAAGCTAGAGGAGGCGCTTGCGGTGAATCCCAAGAAGCATGACACTCTTTGGTGCCTGGGAAATGCTCACACTTCACAAGCATTTTTAATTCCAGACCAGGACGAGGCCAAGGTTTATTTTGATAAGGCAGCTGAGTACTTTCAGCAAGCTGTTGATGAGGATCCTTCGAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGGCTCCTGAGCTGCATGTAGAAATCCATAAGCATGGATTTGGTCAGCAGCAGCAGCAGCAGGCAGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGACAAATACTCAGAAGAAAAAGAAGAGCAGTGATCTGAAGTATGACATATTTGGATGGATAATTCTGGCAGTCGGCATTGTTGCATGGGTGGGATTTGCAAAATCGAACCTGCCACCACCTCCCCCTCCACCTCCTCGATAA

>Glyma.05g079100.2 sequence-type=CDS polypeptide=Glyma.05g079100.2.p locus=Glyma.05g079100 ID=Glyma.05g079100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTTGCAGCAGAGCGAGTTCGATCGCCTCCTGTTCTTCGAGCACGCTCGTAAGGCCGCAGAAGCCGAATACGAGAAGAACCCTCTCGACGCTGATAACTTAACAAGATGGGGTGGAGCTTTATTAGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGAGGCTGTTTCAAAGCTAGAGGAGGCGCTTGCGGTGAATCCCAAGAAGCATGACACTCTTTGGTGCCTGGGAAATGCTCACACTTCACAAGCATTTTTAATTCCAGACCAGGACGAGGCCAAGGTTTATTTTGATAAGGCAGCTGAGTACTTTCAGCAAGCTGTTGATGAGGATCCTTCGAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGGCTCCTGAGCTGCATGTAGAAATCCATAAGCATGGATTTGGTCAGCAGCAGCAGCAGCAGGCAGCAGCAACAGCTGGATCTTCTACTTCTGCTTCGACAAATGTAATACTTAAAAGATTTTGTTGCCTGTCTTTACCCTGTGATTATTCTGTATCAGGCTTTTGTAGCTAA

>Glyma.05g079100.3 sequence-type=CDS polypeptide=Glyma.05g079100.3.p locus=Glyma.05g079100 ID=Glyma.05g079100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTTGCAGCAGAGCGAGTTCGATCGCCTCCTGTTCTTCGAGCACGCTCGTAAGGCCGCAGAAGCCGAATACGAGAAGAACCCTCTCGACGCTGATAACTTAACAAGATGGGGTGGAGCTTTATTAGAGTTGTCTCAGTTTCAGAGTTTTCCTGAATCGAAGAAAATGACCCAAGAGGCTGTTTCAAAGCTAGAGGAGGCGCTTGCGGTGAATCCCAAGAAGCATGACACTCTTTGGTGCCTGGGAAATGCTCACACTTCACAAGCATTTTTAATTCCAGACCAGGACGAGGCCAAGGTTTATTTTGATAAGGCAGCTGAGTACTTTCAGCAAGCTGTTGATGAGGATCCTTCGAATGAACTTTACCGCAAATCATTGGAAGTGGCTGCTAAGGTATGTTCTGTATTGTAG
Predicted protein sequences of Glyma.05g079100
>Glyma.05g079100.1.p sequence-type=predicted peptide transcript=Glyma.05g079100.1 locus=Glyma.05g079100 ID=Glyma.05g079100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDLQQSEFDRLLFFEHARKAAEAEYEKNPLDADNLTRWGGALLELSQFQSFPESKKMTQEAVSKLEEALAVNPKKHDTLWCLGNAHTSQAFLIPDQDEAKVYFDKAAEYFQQAVDEDPSNELYRKSLEVAAKAPELHVEIHKHGFGQQQQQQAAATAGSSTSASTNTQKKKKSSDLKYDIFGWIILAVGIVAWVGFAKSNLPPPPPPPPR*

>Glyma.05g079100.2.p sequence-type=predicted peptide transcript=Glyma.05g079100.2 locus=Glyma.05g079100 ID=Glyma.05g079100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDLQQSEFDRLLFFEHARKAAEAEYEKNPLDADNLTRWGGALLELSQFQSFPESKKMTQEAVSKLEEALAVNPKKHDTLWCLGNAHTSQAFLIPDQDEAKVYFDKAAEYFQQAVDEDPSNELYRKSLEVAAKAPELHVEIHKHGFGQQQQQQAAATAGSSTSASTNVILKRFCCLSLPCDYSVSGFCS*

>Glyma.05g079100.3.p sequence-type=predicted peptide transcript=Glyma.05g079100.3 locus=Glyma.05g079100 ID=Glyma.05g079100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDLQQSEFDRLLFFEHARKAAEAEYEKNPLDADNLTRWGGALLELSQFQSFPESKKMTQEAVSKLEEALAVNPKKHDTLWCLGNAHTSQAFLIPDQDEAKVYFDKAAEYFQQAVDEDPSNELYRKSLEVAAKVCSVL*






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