SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.05g058300

Feature Type:gene_model
Chromosome:Gm05
Start:5525662
stop:5528983
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.05g058300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G16520.2AT ATG8F JGI N/AIEA
GO:0000045GO-bp autophagosome assembly JGI N/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
K08341KEGG Mitochondrial biogenesis JGI N/AIEA
KOG1654 KOG Microtubule-associated anchor protein involved in autophagy and membrane trafficking JGI N/AIEA
PTHR10969PantherFam MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED JGI N/AIEA
PF04110Pfam Ubiquitin-like autophagy protein Apg12 JGI N/AIEA

Gene model name correspondences to Glyma.05g058300 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g04540 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g058300
>Glyma.05g058300.2 sequence-type=CDS polypeptide=Glyma.05g058300.2.p locus=Glyma.05g058300 id=Glyma.05g058300.2.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGACAAAGAGTTACTTCAAACAAGAGCATGATCTTGAGAAGAGAAGAGCCGAGGCTGCTAGGATTAGGGAGAAATACCCAGACCGTATCCCGGTGATTGTGGAGAAGGCAGAAAGAAGTGATATCCCAAGTATTGACAAGAAGAAGTACCTTGTCCCTGCTGATCTGACAGTTGGACAGTTCGTCTATGTTATCCGCAAAAGGATTAAATTAAGCGCAGAAAAGGCAATCTTTATCTTTGTGGACAACGTCCTTCCACCGACAGGAGCAATTATGTCTGCCATATATGATGAGAAGAAGGATGAGGATGGGTTTCTTTATGTTACTTACAGTGGAGAGAACACCTTTGGGGATCTGACTTCCCACTAG

>Glyma.05g058300.3 sequence-type=CDS polypeptide=Glyma.05g058300.3.p locus=Glyma.05g058300 id=Glyma.05g058300.3.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGACAAAGAGTTACTTCAAACAAGAGCATGATCTTGAGAAGAGAAGAGCCGAGGCTGCTAGGATTAGGGAGAAATACCCAGACCGTATCCCGGTGATTGTGGAGAAGGCAGAAAGAAGTGATATCCCAAGTATTGACAAGAAGAAGTACCTTGTCCCTGCTGATCTGACAGTTGGACAGTTCGTCTATGTTATCCGCAAAAGGATTAAATTAAGCGCAGAAAAGGCAATCTTTATCTTTGTGGACAACGTCCTTCCACCGACAGGAGCAATTATGTCTGCCATATATGATGAGAAGAAGGATGAGGATGGGTTTCTTTATGTTACTTACAGTGGAGAGAACACCTTTGGGGATCTGACTTCCCACTAG
Predicted protein sequences of Glyma.05g058300
>Glyma.05g058300.2.p sequence-type=predicted peptide transcript=Glyma.05g058300.2 locus=Glyma.05g058300 id=Glyma.05g058300.2.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MTKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGDLTSH*

>Glyma.05g058300.3.p sequence-type=predicted peptide transcript=Glyma.05g058300.3 locus=Glyma.05g058300 id=Glyma.05g058300.3.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MTKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGDLTSH*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo