Report for Sequence Feature Glyma.05g055900
Feature Type: gene_model
Chromosome: Gm05
Start: 5069618
stop: 5076268
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.05g055900
Proteins Associated with Glyma.05g055900
Locus Gene Symbol Protein Name
NAC024 NAC Transcription Factor gene 24
Expression Patterns of Glyma.05g055900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.05g055900
Paralog Evidence Comments
Glyma.17g138100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.05g055900 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma05g04250 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.05g055900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.05g055900.2 sequence-type=transcript locus=Glyma.05g055900 ID=Glyma.05g055900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTATCAATCTTATTGCTTTATATAAAACGTTCATTAGATAGACATTGAAACAAAGCAACGGTTTTACGTAGTGTCTAAGACATGAATCACTCTTCAAttgctttgcttttcgacttttcgtttgtcttctttaactcttctcttttttatttAGACTTATGAAACTACCTTGAATCTTCATTCAGCTCTATCGGTACACAATATACACAGGTTTTAATTCTTTGAGAGCGGAAATGGATACATTTTCACATGTACCACCAGGCTTTCGGTTTCATCCAACCGATGAAGAGCTCGTTGGTTACTACCTTAGGAAAAAGGTAGCGTCTAAAAGGATTGATCTAGATGTGATCAAAGATGTCGATCTCTATAAAATTGAACCATGGGATCTCCAAGAACTATGCAAAATAGGAACCGATGAACAAAGTGACTGGTACTTCTTCAGTCATAAAGATAAGAAATATCCAACTGGAACTCGCACCAATAGAGCTACAAAAGCAGGATTCTGGAAAGCCACGGGAAGAGACAAGGCAATATACTCTAAGCATTGCCTCATTGGCATGAGAAAGACTCTCGTGTTTTACAAAGGACGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGACTAGAAACTAATGAAAATGGAACTTCTCAGGAAGAAGGCTGGGTTGTGTGTAGAGTGTTCAAGAAGAGGATGACAACAACGCAGAAAGTGGGAGAGTATGATCAATCACCCTGTTGGTACGATGAGCAAGTTTCCTTCATGCAAGATCTTGAATCCCCAAGGCGCAATATTTCTCAGACTTATGCATCATaccaccatcaccaacaacagcaccaccaccaTCCCTGCAAGCCTGAGCTCATGGAATTGCAATACAACAACATTCCCCACGATGCATTCCTCCAACTTCCGCAACTCGAAAGCCCCAAAGTTACTCAATCATCATGCTCAGTTGTCCCTTATGGCTATGAAAGCAACAACAACAACAATGGAAGCACCTTGCAATTCTCATCACTCACTCAGGAAGAACAGCTACAATATTGCAATAATCAACAAAGTCACCATTCTCTCTATGGTAGCAATGATCATGCAGTTGACCAGGTCACAGATTGGCGTGTGCTTGACAAGTTTGTTGCTTCTCAGCTCAGTCACAACAACCAAGATGTTTCCAAGGAAACCAGTTATTCCAATGCACCTATCTTCCATGTGGCTGAACAAATTTCTGTGGCTGCAAATGGATCCAAAAAGGAGCAAGTTTCTCAGGAGTATGCTTCAACGTCTACCTCCAGTTACCAGATTGACCTGTGGAAGTGA
Coding sequences of Glyma.05g055900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.05g055900.1 sequence-type=CDS polypeptide=Glyma.05g055900.1.p locus=Glyma.05g055900 ID=Glyma.05g055900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATACATTTTCACATGTACCACCAGGCTTTCGGTTTCATCCAACCGATGAAGAGCTCGTTGGTTACTACCTTAGGAAAAAGGTAGCGTCTAAAAGGATTGATCTAGATGTGATCAAAGATGTCGATCTCTATAAAATTGAACCATGGGATCTCCAAGAACTATGCAAAATAGGAACCGATGAACAAAGTGACTGGTACTTCTTCAGTCATAAAGATAAGAAATATCCAACTGGAACTCGCACCAATAGAGCTACAAAAGCAGGATTCTGGAAAGCCACGGGAAGAGACAAGGCAATATACTCTAAGCATTGCCTCATTGGCATGAGAAAGACTCTCGTGTTTTACAAAGGACGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGACTAGAAACTAATGAAAATGGAACTTCTCAGGAAGAAGGCTGGGTTGTGTGTAGAGTGTTCAAGAAGAGGATGACAACAACGCAGAAAGTGGGAGAGTATGATCAATCACCCTGTTGGTACGATGAGCAAGTTTCCTTCATGCAAGATCTTGAATCCCCAAGGCGCAATATTTCTCAGACTTATGCATCATACCACCATCACCAACAACAGCACCACCACCATCCCTGCAAGCCTGAGCTCATGGAATTGCAATACAACAACATTCCCCACGATGCATTCCTCCAACTTCCGCAACTCGAAAGCCCCAAAGTTACTCAATCATCATGCTCAGTTGTCCCTTATGGCTATGAAAGCAACAACAACAACAATGGAAGCACCTTGCAATTCTCATCACTCACTCAGGAAGAACAGCTACAATATTGCAATAATCAACAAAGTCACCATTCTCTCTATGGTAGCAATGATCATGCAGTTGACCAGGTCACAGATTGGCGTGTGCTTGACAAGTTTGTTGCTTCTCAGCTCAGTCACAACAACCAAGATGTTTCCAAGGAAACCAGTTATTCCAATGCACCTATCTTCCATGTGGCTGAACAAATTTCTGTGGCTGCAAATGGATCCAAAAAGGAGCAAGTTTCTCAGGAGTATGCTTCAACGTCTACCTCCAGTTACCAGATTGACCTGTGGAAGTGA
>Glyma.05g055900.2 sequence-type=CDS polypeptide=Glyma.05g055900.2.p locus=Glyma.05g055900 ID=Glyma.05g055900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATACATTTTCACATGTACCACCAGGCTTTCGGTTTCATCCAACCGATGAAGAGCTCGTTGGTTACTACCTTAGGAAAAAGGTAGCGTCTAAAAGGATTGATCTAGATGTGATCAAAGATGTCGATCTCTATAAAATTGAACCATGGGATCTCCAAGAACTATGCAAAATAGGAACCGATGAACAAAGTGACTGGTACTTCTTCAGTCATAAAGATAAGAAATATCCAACTGGAACTCGCACCAATAGAGCTACAAAAGCAGGATTCTGGAAAGCCACGGGAAGAGACAAGGCAATATACTCTAAGCATTGCCTCATTGGCATGAGAAAGACTCTCGTGTTTTACAAAGGACGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGACTAGAAACTAATGAAAATGGAACTTCTCAGGAAGAAGGCTGGGTTGTGTGTAGAGTGTTCAAGAAGAGGATGACAACAACGCAGAAAGTGGGAGAGTATGATCAATCACCCTGTTGGTACGATGAGCAAGTTTCCTTCATGCAAGATCTTGAATCCCCAAGGCGCAATATTTCTCAGACTTATGCATCATACCACCATCACCAACAACAGCACCACCACCATCCCTGCAAGCCTGAGCTCATGGAATTGCAATACAACAACATTCCCCACGATGCATTCCTCCAACTTCCGCAACTCGAAAGCCCCAAAGTTACTCAATCATCATGCTCAGTTGTCCCTTATGGCTATGAAAGCAACAACAACAACAATGGAAGCACCTTGCAATTCTCATCACTCACTCAGGAAGAACAGCTACAATATTGCAATAATCAACAAAGTCACCATTCTCTCTATGGTAGCAATGATCATGCAGTTGACCAGGTCACAGATTGGCGTGTGCTTGACAAGTTTGTTGCTTCTCAGCTCAGTCACAACAACCAAGATGTTTCCAAGGAAACCAGTTATTCCAATGCACCTATCTTCCATGTGGCTGAACAAATTTCTGTGGCTGCAAATGGATCCAAAAAGGAGCAAGTTTCTCAGGAGTATGCTTCAACGTCTACCTCCAGTTACCAGATTGACCTGTGGAAGTGA
Predicted protein sequences of Glyma.05g055900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.05g055900.1.p sequence-type=predicted peptide transcript=Glyma.05g055900.1 locus=Glyma.05g055900 ID=Glyma.05g055900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDTFSHVPPGFRFHPTDEELVGYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTSQEEGWVVCRVFKKRMTTTQKVGEYDQSPCWYDEQVSFMQDLESPRRNISQTYASYHHHQQQHHHHPCKPELMELQYNNIPHDAFLQLPQLESPKVTQSSCSVVPYGYESNNNNNGSTLQFSSLTQEEQLQYCNNQQSHHSLYGSNDHAVDQVTDWRVLDKFVASQLSHNNQDVSKETSYSNAPIFHVAEQISVAANGSKKEQVSQEYASTSTSSYQIDLWK*
>Glyma.05g055900.2.p sequence-type=predicted peptide transcript=Glyma.05g055900.2 locus=Glyma.05g055900 ID=Glyma.05g055900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDTFSHVPPGFRFHPTDEELVGYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTSQEEGWVVCRVFKKRMTTTQKVGEYDQSPCWYDEQVSFMQDLESPRRNISQTYASYHHHQQQHHHHPCKPELMELQYNNIPHDAFLQLPQLESPKVTQSSCSVVPYGYESNNNNNGSTLQFSSLTQEEQLQYCNNQQSHHSLYGSNDHAVDQVTDWRVLDKFVASQLSHNNQDVSKETSYSNAPIFHVAEQISVAANGSKKEQVSQEYASTSTSSYQIDLWK*