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Report for Sequence Feature Glyma.05g055000

Feature Type:gene_model
Chromosome:Gm05
Start:4996520
stop:5001001
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g055000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G12520.1AT copper chaperone for SOD1 JGI N/AIEA
GO:0006801GO-bp superoxide metabolic process EnsemblGenomesN/AIEA
GO:0006801GO-bp superoxide metabolic process JGI N/AIEA
GO:0030001GO-bp metal ion transport EnsemblGenomesN/AIEA
GO:0030001GO-bp metal ion transport JGI N/AIEA
GO:0043085GO-bp positive regulation of catalytic activity EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0016532GO-mf superoxide dismutase copper chaperone activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
KOG4656 KOG Copper chaperone for superoxide dismutase JGI N/AIEA
PTHR10003Panther SUPEROXIDE DISMUTASE [CU-ZN]-RELATED JGI N/AIEA
PTHR10003:SF27Panther COPPER CHAPERONE FOR SUPEROXIDE DISMUTASE JGI N/AIEA
PF00080PFAM Copper/zinc superoxide dismutase (SODC) JGI N/AIEA
PF00403PFAM Heavy-metal-associated domain JGI N/AIEA

Proteins Associated with Glyma.05g055000
LocusGene SymbolProtein Name
CCS Cu/Zn-superoxide dismutase copper chaperone

Expression Patterns of Glyma.05g055000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.05g055000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g04170 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g055000
>Glyma.05g055000.2 sequence-type=transcript locus=Glyma.05g055000 ID=Glyma.05g055000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CAAAAACCAAGTGGAAGGTGGAGAAGAAACAAAAAGAATAATAAAGAGTTGAAGCGAAGGCGTGGATCCATCTAGAAAGAAACATAGAGGTAGCTAGCTAGGCAGCCACGAGCCTTGGCGCATTTTCTTTTTTCTGTGGGCGAGTATAATAATAATTGCAGTAAAATGGCATTTCTGAGGTCAATAGCAACAACAGCAATTGCTACTATACCTGCAGCCTTAGCATTCTCATCATCTTCATCATCTTCTTTCCCTCGCTCTTCCCAATCCCCCAATCCCCAAAATAGATTAGGTCTTGTCAAAACACTTGCTACTCCTCCCTCTGCTCTCCACATGGACCACAAACTCTCTTCTCAGCCTGACGCTGTCTTGCCCGAGTTACTGACGGAGTTCATGGTGGACATGAAATGCGAAGGTTGTGTTAATGCTGTCAAAAATAAGTTGAACGAGATAAATGGAGTTAAGAACGTAGAGGTGGACTTGAGCAATCAGGTTGTGAGGATTCTCGGTTCAACGCCGGTGAAGACTATGACTGAAGCTTTGGAGCAGACTGGTAGAAAAGCCCGGTTAATTGGACAAGGAGTGCCGGAAGACTTCTTAATATCTGCTGCTGTTTCCGAATTCAAAGGTCCAGATATTTTTGGTGTTGTTCGCCTGGCTCAAGTAAATATGGAACTGGCTAGGATTGAAGCCAACTTTAGCGGGCTGTCGCCAGGAAAGCATGGTTGGTCTATTAATGAGTTTGGTGATCTGACTAGAGGTGCAGCAAGCACTGGTAAAATGTTCAATCCGCCACTGGGCGACCTGGGAACACTAGAAGCTAACGAAAAGGGTGAGGCCTTCTATAGTGGGGTCAAAGAAAAGCTGAGGGTGGCTGATCTTATTGGACGATCTGTGGTGGTATATGCAACTGAAGATAAATCAGAACATGGTATAACTGCTGCAGTAATTGCCAGAAGTGCTGGGGTGGGTGAGAACTATAAGAAACTCTGTACGTGTGATGGCACCACCATATGGGAGGCCACGGATACAGATTTTGTTACTAGCAAGGTCTGATAGATAAAGTAATTCACTGAAAACAAAGCATTGCAATTTAGTTGTCTTGTCGCCCATCAGCTCTACCATATTTTGAGGATTGTATCCGCCTTTCAGGAAAGGAATTCATCTGTGTTTAGTTTACATTGAATTTCTTCACCAGAATTATGAACTTTTGGATAAGATGGTTGTTAATTTGACAAATCTCTTATGTTCTTAATAAGGCACAAGTTATCGCATTA
Coding sequences of Glyma.05g055000
>Glyma.05g055000.1 sequence-type=CDS polypeptide=Glyma.05g055000.1.p locus=Glyma.05g055000 ID=Glyma.05g055000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATTTCTGAGGTCAATAGCAACAACAGCAATTGCTACTATACCTGCAGCCTTAGCATTCTCATCATCTTCATCATCTTCTTTCCCTCGCTCTTCCCAATCCCCCAATCCCCAAAATAGATTAGGTCTTGTCAAAACACTTGCTACTCCTCCCTCTGCTCTCCACATGGACCACAAACTCTCTTCTCAGCCTGACGCTGTCTTGCCCGAGTTACTGACGGAGTTCATGGTGGACATGAAATGCGAAGGTTGTGTTAATGCTGTCAAAAATAAGTTGAACGAGATAAATGGAGTTAAGAACGTAGAGGTGGACTTGAGCAATCAGGTTGTGAGGATTCTCGGTTCAACGCCGGTGAAGACTATGACTGAAGCTTTGGAGCAGACTGGTAGAAAAGCCCGGTTAATTGGACAAGGAGTGCCGGAAGACTTCTTAATATCTGCTGCTGTTTCCGAATTCAAAGGTCCAGATATTTTTGGTGTTGTTCGCCTGGCTCAAGTAAATATGGAACTGGCTAGGATTGAAGCCAACTTTAGCGGGCTGTCGCCAGGAAAGCATGGTTGGTCTATTAATGAGTTTGGTGATCTGACTAGAGGTGCAGCAAGCACTGGTAAAATGTTCAATCCGGTAAATGAGGAAAACAGTAAAGAGCCACTGGGCGACCTGGGAACACTAGAAGCTAACGAAAAGGGTGAGGCCTTCTATAGTGGGGTCAAAGAAAAGCTGAGGGTGGCTGATCTTATTGGACGATCTGTGGTGGTATATGCAACTGAAGATAAATCAGAACATGGTATAACTGCTGCAGTAATTGCCAGAAGTGCTGGGGTGGGTGAGAACTATAAGAAACTCTGTACGTGTGATGGCACCACCATATGGGAGGCCACGGATACAGATTTTGTTACTAGCAAGGTCTGA

>Glyma.05g055000.2 sequence-type=CDS polypeptide=Glyma.05g055000.2.p locus=Glyma.05g055000 ID=Glyma.05g055000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATTTCTGAGGTCAATAGCAACAACAGCAATTGCTACTATACCTGCAGCCTTAGCATTCTCATCATCTTCATCATCTTCTTTCCCTCGCTCTTCCCAATCCCCCAATCCCCAAAATAGATTAGGTCTTGTCAAAACACTTGCTACTCCTCCCTCTGCTCTCCACATGGACCACAAACTCTCTTCTCAGCCTGACGCTGTCTTGCCCGAGTTACTGACGGAGTTCATGGTGGACATGAAATGCGAAGGTTGTGTTAATGCTGTCAAAAATAAGTTGAACGAGATAAATGGAGTTAAGAACGTAGAGGTGGACTTGAGCAATCAGGTTGTGAGGATTCTCGGTTCAACGCCGGTGAAGACTATGACTGAAGCTTTGGAGCAGACTGGTAGAAAAGCCCGGTTAATTGGACAAGGAGTGCCGGAAGACTTCTTAATATCTGCTGCTGTTTCCGAATTCAAAGGTCCAGATATTTTTGGTGTTGTTCGCCTGGCTCAAGTAAATATGGAACTGGCTAGGATTGAAGCCAACTTTAGCGGGCTGTCGCCAGGAAAGCATGGTTGGTCTATTAATGAGTTTGGTGATCTGACTAGAGGTGCAGCAAGCACTGGTAAAATGTTCAATCCGCCACTGGGCGACCTGGGAACACTAGAAGCTAACGAAAAGGGTGAGGCCTTCTATAGTGGGGTCAAAGAAAAGCTGAGGGTGGCTGATCTTATTGGACGATCTGTGGTGGTATATGCAACTGAAGATAAATCAGAACATGGTATAACTGCTGCAGTAATTGCCAGAAGTGCTGGGGTGGGTGAGAACTATAAGAAACTCTGTACGTGTGATGGCACCACCATATGGGAGGCCACGGATACAGATTTTGTTACTAGCAAGGTCTGA
Predicted protein sequences of Glyma.05g055000
>Glyma.05g055000.1.p sequence-type=predicted peptide transcript=Glyma.05g055000.1 locus=Glyma.05g055000 ID=Glyma.05g055000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFLRSIATTAIATIPAALAFSSSSSSSFPRSSQSPNPQNRLGLVKTLATPPSALHMDHKLSSQPDAVLPELLTEFMVDMKCEGCVNAVKNKLNEINGVKNVEVDLSNQVVRILGSTPVKTMTEALEQTGRKARLIGQGVPEDFLISAAVSEFKGPDIFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTRGAASTGKMFNPVNEENSKEPLGDLGTLEANEKGEAFYSGVKEKLRVADLIGRSVVVYATEDKSEHGITAAVIARSAGVGENYKKLCTCDGTTIWEATDTDFVTSKV*

>Glyma.05g055000.2.p sequence-type=predicted peptide transcript=Glyma.05g055000.2 locus=Glyma.05g055000 ID=Glyma.05g055000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFLRSIATTAIATIPAALAFSSSSSSSFPRSSQSPNPQNRLGLVKTLATPPSALHMDHKLSSQPDAVLPELLTEFMVDMKCEGCVNAVKNKLNEINGVKNVEVDLSNQVVRILGSTPVKTMTEALEQTGRKARLIGQGVPEDFLISAAVSEFKGPDIFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTRGAASTGKMFNPPLGDLGTLEANEKGEAFYSGVKEKLRVADLIGRSVVVYATEDKSEHGITAAVIARSAGVGENYKKLCTCDGTTIWEATDTDFVTSKV*






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