SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G50400.1 | AT | purple acid phosphatase 27 | JGI | N/A | IEA |
| GO:0016311 | GO-bp | dephosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0003993 | GO-mf | acid phosphatase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| KOG1378 | KOG | Purple acid phosphatase | JGI | N/A | IEA |
| PTHR22953 | Panther | ACID PHOSPHATASE RELATED | JGI | N/A | IEA |
| PF00149 | PFAM | Calcineurin-like phosphoesterase | JGI | N/A | IEA |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| PAP27 | probable inactive purple acid phosphatase 27-like |
|
Glyma.05g047900 not represented in the dataset |
Glyma.05g047900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma05g03320 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.05g047900.1 sequence-type=CDS polypeptide=Glyma.05g047900.1.p locus=Glyma.05g047900 ID=Glyma.05g047900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAGATGAAGATAGAAGAACGTGTTAACATGAATCTGGTTCTGGTAGTGGCCTGGTTGGTCCAGTTGAACATTGTTTATGGCTTTGCTCACATTCATGGTTTTGGAGAGCAACCACTCTCCAGGATTGCCATCCACAAGGCTGTTGTTTCACTCCACAGTAGCGCTTCCATCACAGCCACCCCTTCTCTTCTTGGCACAAAGGGTGAGGATACACAATGGGTGACAGTAGATATTGATTACCCTGACCCATCTGCAGATGATTGGGTTGGAGTTTTCTCTCCTGCAAAGTTCAATGCATCAACCTGTCCACCTGTGAATGATCCAAAAGAAGTGATTCCATACATATGCTCAGCCCCAATTAAGTACAAGTTTATGAATTACTCCAACTCATACTATACGAAGACAGGAAAAGCTTCTTTGAAGTTCCAGTTGATCAATCAACGTGCAGATTTCTCCTTTGCGCTATTTTCAGGCGGACTGTTAAATCCTAAGCTTGTGGCAGTTTCCAATTTCATATCATTTGTCAATCCTAAAGTGCCTCTATATCCAAGACTTGCTCAGGGAAAGTCTTGGGATGAAATGACAGTTACTTGGACTAGTGGATATGACATAAATGAAGCTACACCCTTTGTTGAGTGGGGTCCTAAGGGCAAAACGCAAGTGCAATCTCCTGCTGGAACATTGACATTCGGTCGTAACAGCATGTGTGGTTCACCTGCACGAACTGTTGGTTGGCGTGACCCTGGTTTCATACACACAAGTTTTCTCAAAAACCTTTGGCCAAATTTAGTGTATACATATCAATTAGGGCATCTATTGTCTAATGGTTCTTATATTTGGAGCAAGAAATATTCATTCAAGTCATCACCATATCCTGGACAGGACTCATTGCAACGTGTTATCATATTTGGTGACATGGGGAAGGCCGAACGTGATGGTTCAAATGAGTATAATGCCTATCAACCTGGTTCACTTAACACCACTGACCAGCTCATCAAGGATTTAGAAAATATTGACATTGTTTTCCACATAGGAGATATTACTTATGCAAATGGATACCTCTCGCAGTGGGACCAATTCACAGCTCAAGTGGAACCAATTGCATCAACAGTGCCATATATGATTGCCAGTGGTAATCATGAACGTGATTGGCCCAACACAGGATCCTTTTATAGCACTACAGATTCAGGTGGTGAATGCGGAGTTTTGGCGCAGAACATGTTTTTTGTTCCAGCTGAAAACAGAGCAAACTTTTGGTATGCAATGGATTATGGCATGTTTCGCTTCTGCATAGCTGACACTGAACATGATTGGAGGGAAGGATCTGAACAATACAAATTCATTGAGCATTGTCTTGCAACAGTAGACAGACAGAAACAACCCTGGTTGATTTTTGCTGCTCACCGTGTGCTTGGATATTCCTCTGATTTTTGGTATGGTGTGGAGGGTTCATTTGAAGAGCCAATGGGAAGAGAGAGTTTGCAGAGACTTTGGCAGAAATATAAAGTAGATATTGCATTTTATGGCCATGTCCATAACTACGAAAGGACATGCCCCATTTATCAGAATCAATGTGTGAATGATGAAAGGTCTCACTATTCCGGTGTTGTGAATGGAACAATTCATGTTGTTGCTGGAGGAGCAGGAAGCCACTTGTCAAATTTCAGCCAAGTAACCCCTAAGTGGAGTCTTTACAGAGACTACGATTTTGGGTTTGTCAAGTTGACAGCATTCAGTCATTCATCTCTCCTCTTTGAATACAAGAAAAGCAGTGATGGAAAGGTCTACGATTCTTTTACCATTTCAAGGGATTACAAAGATGTCTTAGCCTGTGTGCATGATAGCTGTGAAGCAACCACTTCAGCAACTTGA
>Glyma.05g047900.1.p sequence-type=predicted peptide transcript=Glyma.05g047900.1 locus=Glyma.05g047900 ID=Glyma.05g047900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKMKIEERVNMNLVLVVAWLVQLNIVYGFAHIHGFGEQPLSRIAIHKAVVSLHSSASITATPSLLGTKGEDTQWVTVDIDYPDPSADDWVGVFSPAKFNASTCPPVNDPKEVIPYICSAPIKYKFMNYSNSYYTKTGKASLKFQLINQRADFSFALFSGGLLNPKLVAVSNFISFVNPKVPLYPRLAQGKSWDEMTVTWTSGYDINEATPFVEWGPKGKTQVQSPAGTLTFGRNSMCGSPARTVGWRDPGFIHTSFLKNLWPNLVYTYQLGHLLSNGSYIWSKKYSFKSSPYPGQDSLQRVIIFGDMGKAERDGSNEYNAYQPGSLNTTDQLIKDLENIDIVFHIGDITYANGYLSQWDQFTAQVEPIASTVPYMIASGNHERDWPNTGSFYSTTDSGGECGVLAQNMFFVPAENRANFWYAMDYGMFRFCIADTEHDWREGSEQYKFIEHCLATVDRQKQPWLIFAAHRVLGYSSDFWYGVEGSFEEPMGRESLQRLWQKYKVDIAFYGHVHNYERTCPIYQNQCVNDERSHYSGVVNGTIHVVAGGAGSHLSNFSQVTPKWSLYRDYDFGFVKLTAFSHSSLLFEYKKSSDGKVYDSFTISRDYKDVLACVHDSCEATTSAT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
