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Report for Sequence Feature Glyma.05g047200

Feature Type:gene_model
Chromosome:Gm05
Start:4192863
stop:4194600
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G27190.1AT uridine kinase-like 2 JGI N/AIEA
GO:0009116GO-bp nucleoside metabolic process EnsemblGenomesN/AIEA
GO:0044206GO-bp UMP salvage EnsemblGenomesN/AIEA
GO:0004849GO-mf uridine kinase activity EnsemblGenomesN/AIEA
PTHR10285Panther URIDINE KINASE JGI N/AIEA
PWY-7183SoyCyc9 pyrimidine nucleobases salvage I Plant Metabolic Network ISS
PWY-7193SoyCyc9 pyrimidine ribonucleosides salvage I Plant Metabolic Network ISS
PWY-7196SoyCyc9 superpathway of pyrimidine ribonucleosides salvage Plant Metabolic Network ISS
PWY-7208SoyCyc9 superpathway of pyrimidine nucleobases salvage Plant Metabolic Network ISS
PWYQT-4445SoyCyc9 pyrimidine salvage pathway Plant Metabolic Network ISS
GN7V-66031SoyCyc9-rxn uridine kinase Plant Metabolic Network ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g047200 not represented in the dataset

Glyma.05g047200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.17g129000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.


>Glyma.05g047200.1 sequence-type=CDS polypeptide=Glyma.05g047200.1.p locus=Glyma.05g047200 ID=Glyma.05g047200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACAGAAAGTCTACAACAAGAAGCTTCCTACTCCATTGCGCTTATTTATGATACGCTTCCTAAAGATATTTCGGAGAGCCATGTTCTTCTCATGGACCCAGTACTAGGGACATCAATCAAGCTTCTTATAAAGAAGGGAGTTTCAGAGTCCCGGATAATATTCCTTAACCTCATTTCTGCTCCTGAGGGAATACTTTGTGTATGTAAACGTTTTCTGCATCTGAAAATCATCACATCGGAGATCGAAGAAGGATTAAAAGAGCAGTTCCATGTCATACCAGGGTTAGGAGAATTTGGTGATCGCTACTTTGGTACGGACGATTCTTAG

>Glyma.05g047200.1.p sequence-type=predicted peptide transcript=Glyma.05g047200.1 locus=Glyma.05g047200 ID=Glyma.05g047200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTESLQQEASYSIALIYDTLPKDISESHVLLMDPVLGTSIKLLIKKGVSESRIIFLNLISAPEGILCVCKRFLHLKIITSEIEEGLKEQFHVIPGLGEFGDRYFGTDDS*







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