SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G03860.1 | AT | malate synthase | JGI | N/A | IEA |
| GO:0006097 | GO-bp | glyoxylate cycle | EnsemblGenomes | N/A | IEA |
| GO:0006097 | GO-bp | glyoxylate cycle | JGI | N/A | IEA |
| GO:0006099 | GO-bp | tricarboxylic acid cycle | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0004474 | GO-mf | malate synthase activity | EnsemblGenomes | N/A | IEA |
| GO:0004474 | GO-mf | malate synthase activity | JGI | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| KOG1261 | KOG | Malate synthase | JGI | N/A | IEA |
| PTHR21631 | Panther | ISOCITRATE LYASE/MALATE SYNTHASE | JGI | N/A | IEA |
| PTHR21631:SF1 | Panther | MALATE SYNTHASE | JGI | N/A | IEA |
| PF01274 | PFAM | Malate synthase | JGI | N/A | IEA |
| GLYOXDEG-PWY | SoyCyc9 | glycolate and glyoxylate degradation II | Plant Metabolic Network | ISS | |
| GLYOXYLATE-BYPASS | SoyCyc9 | glyoxylate cycle | Plant Metabolic Network | ISS | |
| PWY-561 | SoyCyc9 | superpathway of glyoxylate cycle and fatty acid degradation | Plant Metabolic Network | ISS | |
| GN7V-47551 | SoyCyc9-rxn | malate synthase | Plant Metabolic Network | ISS |
|
Glyma.05g045900 not represented in the dataset |
Glyma.05g045900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.17g128100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma05g03100 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.05g045900.1 sequence-type=CDS polypeptide=Glyma.05g045900.1.p locus=Glyma.05g045900 ID=Glyma.05g045900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGACCTCGGAACCTATGAAGTGCCAGAAGGAGTGGACATTCTAGGAAGATACGATGCAGAGTTTGCAAAAATCCTCACAAAAGACGCTTTGAAATTCGTTGCTGAGCTGCAACGTGAGTTCAGGAGCGATATCAAGCATGCATTAGAGAGCAGAAGAGAGGCAAAGAAGAAGTACAATGAAGGGACTCTTCCGGGGTTTGATCCTGCCACCAGTCACATTAGAGACCAGGAGTGGCTGTGTGCACCTGTTCCACCAGCTGCTGCTGATAGGAAAGTGGAGATCACTGGCCCTGTGGACAGAAAAATGGTCATCAATGCTCTCAACTCTGCAGCTAAAGTCTTTATGGCTGATTTAGAAGATGCACTGTCACCGACCTGGGAAAATCTTATTAGTGGTCAAGTGAACTTGAAGGATGCTGTGGATGGGACAATAAGCTTCCATGACAAAGTAAGAAACAGGGTTTACAAGCTCAATGATCAGACAGCAAAGCTTTTTGTGAGACCAAGAGGTTGGCATCTACCTGAAGCACATATTCTGATTGATGGTGAACCTGCAACTGGTTGCCTTGTTGATTTTGGCCTCTATTTCTACCACAACCACTCGGCATTCCGACGCACTCAAGGTGCTGGCTTTGGCCCTTTCTTTTATCTTCCCAAAATGGAGCATTCAAGGGAAGCTAAGATATGGAACAGTGTGTTTGAGAAGGCTGAGGATGTAGCAGGCATTGAAAGAGGAAGCATAAGGGCAACGGTTCTGATAGAAACACTTCCTGCAGTGTTTCAAATGGATGAAATTCTATATGAGCTGAAAGAGCATTCGGTGGGTCTAAACTGTGGGCGTTGGGATTACATTTTCAGTTATGTTAAAACCTTCCAGACTCACCCAGATCGTCTACTACCAGACAGGGTCCAGGTTGGCATGACTCAACATTTCATGAAGAGTTACTCTGATCTCCTCATCAGGACATGCCACAGGCGCGGTGTGCATGCTATGGGAGGAATGGCAGCACAGATTCCAATCAAAGATGACCCAGTTGCAAATGAGGCAGCACTGGAACTTGTAAGGAAGGACAAGCTTAGAGAAGTGAAGGCAGGCCACGATGGAACTTGGGCTGCACATCCTGGTCTCATTCCATCCTGCATGGAGGTTTTCAACAACAACATGGGCAATGCTCCCAACCAGATAGACACAGTGAAACGCGATGATGCTGCAAACTTAACTGAACAAGACCTCTTGCAGATACCAACAGGAACCCGGACCATGGAAGGTCTCAGATTGAATACAAGGGTGGGCATTCAGTACTTGGCAGCATGGCTCAGCGGAAGCGGTTGCGTGCCTCTTTACAACCTCATGGAAGATGCTGCCACTGCTGAGATTAGCAGGGTGCAGAACTGGCAGTGGCTCAAGTATGGAGTGGAGCTAGATGGGGATGGGCTTGGAGAGAAAGTGAACAAAGACCTTTTTCATAGAGTGGTTGAAGAAGAGATGGCTAGGATTGAAAAGGAAGTGGGAACAGAGAAGTTCGAGAAGGGAATGTACAAGGAGGCTTGCAAGATCTTCACTCGCCAATGCACGTCCCTAACACTTGATGATTTTCTCACTTTGGATGCCTATAATTACATAGTCGTGCATCACCCCAAGGAAGGAACCGTCAAAGCTTCGAACTAA
>Glyma.05g045900.1.p sequence-type=predicted peptide transcript=Glyma.05g045900.1 locus=Glyma.05g045900 ID=Glyma.05g045900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDLGTYEVPEGVDILGRYDAEFAKILTKDALKFVAELQREFRSDIKHALESRREAKKKYNEGTLPGFDPATSHIRDQEWLCAPVPPAAADRKVEITGPVDRKMVINALNSAAKVFMADLEDALSPTWENLISGQVNLKDAVDGTISFHDKVRNRVYKLNDQTAKLFVRPRGWHLPEAHILIDGEPATGCLVDFGLYFYHNHSAFRRTQGAGFGPFFYLPKMEHSREAKIWNSVFEKAEDVAGIERGSIRATVLIETLPAVFQMDEILYELKEHSVGLNCGRWDYIFSYVKTFQTHPDRLLPDRVQVGMTQHFMKSYSDLLIRTCHRRGVHAMGGMAAQIPIKDDPVANEAALELVRKDKLREVKAGHDGTWAAHPGLIPSCMEVFNNNMGNAPNQIDTVKRDDAANLTEQDLLQIPTGTRTMEGLRLNTRVGIQYLAAWLSGSGCVPLYNLMEDAATAEISRVQNWQWLKYGVELDGDGLGEKVNKDLFHRVVEEEMARIEKEVGTEKFEKGMYKEACKIFTRQCTSLTLDDFLTLDAYNYIVVHHPKEGTVKASN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
