Glyma.05g041900

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Report for Sequence Feature Glyma.05g041900

Feature Type:	gene_model
Chromosome:	Gm05
Start:	3752817
stop:	3755142
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05g041900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20360.1	AT	RAB GTPase homolog E1B	JGI	N/A	IEA
GO:0006412	GO-bp	translation	EnsemblGenomes	N/A	IEA
GO:0006414	GO-bp	translational elongation	EnsemblGenomes	N/A	IEA
GO:0005622	GO-cc	intracellular	EnsemblGenomes	N/A	IEA
GO:0009507	GO-cc	chloroplast	EnsemblGenomes	N/A	IEA
GO:0009536	GO-cc	plastid	EnsemblGenomes	N/A	IEA
GO:0000166	GO-mf	nucleotide binding	EnsemblGenomes	N/A	IEA
GO:0003746	GO-mf	translation elongation factor activity	EnsemblGenomes	N/A	IEA
GO:0003924	GO-mf	GTPase activity	EnsemblGenomes	N/A	IEA
GO:0003924	GO-mf	GTPase activity	JGI	N/A	IEA
GO:0005525	GO-mf	GTP binding	EnsemblGenomes	N/A	IEA
GO:0005525	GO-mf	GTP binding	JGI	N/A	IEA
KOG0460	KOG	Mitochondrial translation elongation factor Tu	JGI	N/A	IEA
PTHR23115	Panther	TRANSLATION FACTOR	JGI	N/A	IEA
PTHR23115:SF31	Panther		JGI	N/A	IEA
PF00009	PFAM	Elongation factor Tu GTP binding domain	JGI	N/A	IEA
PF03143	PFAM	Elongation factor Tu C-terminal domain	JGI	N/A	IEA
PF03144	PFAM	Elongation factor Tu domain 2	JGI	N/A	IEA

Proteins Associated with Glyma.05g041900

Locus	Gene Symbol	Protein Name
	TUFB1	elongation factor Tu

Expression Patterns of Glyma.05g041900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g041900 not represented in the dataset	Glyma.05g041900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.05g041900

Paralog	Evidence	Comments
Glyma.17g124500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g041900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma05g02670	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.05g041900

Limit To All Plant Sequences

>Glyma.05g041900.2 sequence-type=transcript locus=Glyma.05g041900 ID=Glyma.05g041900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGCGTATGTGCCTCAAGGTTCTCCGTGGGCGATTTGCTAATGAAGTTGAAGGCAGAAAAGGATAAAACTTAACAAGAGGAGCTGTTTTGTCCACCGCATTCCCAAACCCTTGAACACTATCCTCTTCTCAGTCTCATACACCAAACCAAAAACCTCACTTTCCAATGGCAATTTCTTGGGCAGCAGCAACAACCTCAAAGCTCGCATACCCTCCTCATGTCCACTTCTCTCCTTCACCCTCCTCCAATTATCTCTTCCTTAAAACCCACAAACCCTCCGCCACACACCTCTCCTCTTCCTTCATccaccccaccacaatcctccacctcgccgctgccaacaccaccaccCGCCGCCGCTCCTTCACCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTCAACATCGGCACCATCGGCCACGTCGACCACGGTAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCTCCCTCGGCAATAGTGCCCCTAAAAAATACGACGAGATCGACGCCGCCCCCGAGGAGCGCGCCCGCGGCATCACCATCAACACCGCCACCGTCGAGTACGAGACCGAGAACCGCCACTACGCCCACGTCGACTGCCCCGGCCACGCCGACTACGTCAAGAACATGATCACCGGCGCTGCCCAGATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGCCCAATGCCCCAAACCAAAGAACACATTCTTTTGGCCAAACAAGTCGGCGTTCCCAACATTGTCGTCTTCCTCAACAAACAGGACCAGGTTGATGACGAGGAGCTTCTTCAGTTAGTAGAATTGGAGGTCCGGGAGCTTCTTTCCAAGTACGAGTTCCCCGGAGACGATGTTCCGATTATCTCCGGTTCCGCTTTGCTGTCTTTGGAAGCTTTGATGGCCAACCCTGCCATCAAGCGCGGCGAAAACCAATGGGTTGATAAAATTTACGAGCTCATGGAAGCTGTGGATGACTACATTCCCATCCCTCAGCGCCAAACTGAACTTCCCTTTTTGCTGGCCATTGAGGATGTTTTCACCATCACCGGTCGTGGAACCGTCGCCACCGGAAGGGTTGAGAGAGGTACTATTAGGGTTGGAGAGACTGTTGATATTGTTGGTGTGAAGGAGACTAGGAACACCACTGTGACTGGGGTGGAAATGTTTCAGAAGATTCTGGATGAGGCTTTGGCTGGGGACAATGTGGGCTTGTTGCTTAGGGGTATTCAGAAAACTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCTGGAACCATTACTCCTCACACCAAGTTTTCTGCAATTGTGTATGTCTTGAAGAAGGAAGAGGGTGGGAGGCACTCTCCCTTCTTTTCCGGCTACCGGCCTCAGTTCTACATGAGGACTACCGATGTTACTGGCAAGGTAACTGAAATTATGAATGACAAGGATGAAGAGTCCAAGATGGTTATGCCGGGCGACCGTGTTAAGCTGGTGGTTGAACTTATTGTGCCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGCAAAACTGTTGGAGCTGGTGTTATCCAATCCATCATTGAGTAGTAAGTTGTTGTGAGATTGGTATCCCAACTACTTGACTCTTACACTGTTAGCAGAGTATCTATCATCGACGATGGGCTTGTGCAATTGAGTTTTGTCATTTTACACAACTGCTGCTATTTTGTTATATTTTGTAGGTTTCTAGATGATGTTTAGTTGAGTTGGACAATGAGTTTCCTATGGCTTGTTTAACTTCCATCTTTTTTATTGTTATGATTCATCTGTTAGAACTTGAGAGCAAGATTCCATAAATTTCTGCTTGCCTGAAATTATGAAATTTGTCTTACAAAGCTGAACTGTGTTTTCTCTATATTACAGTCATGCTATGTTTGGGTGGAGGGTGAGTCACTTCCTTTGTTTGGATGTATGAGGGGAACTCCTTACCCCTTGTTTAGGAGTTGAAGCAAAGGGAATATTAAGTTATTTTCTC

Coding sequences of Glyma.05g041900

Limit To All Plant Sequences

>Glyma.05g041900.1 sequence-type=CDS polypeptide=Glyma.05g041900.1.p locus=Glyma.05g041900 ID=Glyma.05g041900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAATTTCTTGGGCAGCAGCAACAACCTCAAAGCTCGCATACCCTCCTCATGTCCACTTCTCTCCTTCACCCTCCTCCAATTATCTCTTCCTTAAAACCCACAAACCCTCCGCCACACACCTCTCCTCTTCCTTCATCCACCCCACCACAATCCTCCACCTCGCCGCTGCCAACACCACCACCCGCCGCCGCTCCTTCACCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTCAACATCGGCACCATCGGCCACGTCGACCACGGTAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCTCCCTCGGCAATAGTGCCCCTAAAAAATACGACGAGATCGACGCCGCCCCCGAGGAGCGCGCCCGCGGCATCACCATCAACACCGCCACCGTCGAGTACGAGACCGAGAACCGCCACTACGCCCACGTCGACTGCCCCGGCCACGCCGACTACGTCAAGAACATGATCACCGGCGCTGCCCAGATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGCCCAATGCCCCAAACCAAAGAACACATTCTTTTGGCCAAACAAGTCGGCGTTCCCAACATTGTCGTCTTCCTCAACAAACAGGACCAGGTTGATGACGAGGAGCTTCTTCAGTTAGTAGAATTGGAGGTCCGGGAGCTTCTTTCCAAGTACGAGTTCCCCGGAGACGATGTTCCGATTATCTCCGGTTCCGCTTTGCTGTCTTTGGAAGCTTTGATGGCCAACCCTGCCATCAAGCGCGGCGAAAACCAATGGGTTGATAAAATTTACGAGCTCATGGAAGCTGTGGATGACTACATTCCCATCCCTCAGCGCCAAACTGAACTTCCCTTTTTGCTGGCCATTGAGGATGTTTTCACCATCACCGGTCGTGGAACCGTCGCCACCGGAAGGGTTGAGAGAGGTACTATTAGGGTTGGAGAGACTGTTGATATTGTTGGTGTGAAGGAGACTAGGAACACCACTGTGACTGGGGTGGAAATGTTTCAGAAGATTCTGGATGAGGCTTTGGCTGGGGACAATGTGGGCTTGTTGCTTAGGGGTATTCAGAAAACTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCTGGAACCATTACTCCTCACACCAAGTTTTCTGCAATTGTGTATGTCTTGAAGAAGGAAGAGGGTGGGAGGCACTCTCCCTTCTTTTCCGGCTACCGGCCTCAGTTCTACATGAGGACTACCGATGTTACTGGCAAGGTAACTGAAATTATGAATGACAAGGATGAAGAGTCCAAGATGGTTATGCCGGGCGACCGTGTTAAGCTGGTGGTTGAACTTATTGTGCCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGCAAAACTGTTGGAGCTGGTGTTATCCAATCCATCATTGAGTAG

>Glyma.05g041900.2 sequence-type=CDS polypeptide=Glyma.05g041900.2.p locus=Glyma.05g041900 ID=Glyma.05g041900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAATTTCTTGGGCAGCAGCAACAACCTCAAAGCTCGCATACCCTCCTCATGTCCACTTCTCTCCTTCACCCTCCTCCAATTATCTCTTCCTTAAAACCCACAAACCCTCCGCCACACACCTCTCCTCTTCCTTCATCCACCCCACCACAATCCTCCACCTCGCCGCTGCCAACACCACCACCCGCCGCCGCTCCTTCACCGTCCGCGCCGCCCGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTCAACATCGGCACCATCGGCCACGTCGACCACGGTAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCTCCCTCGGCAATAGTGCCCCTAAAAAATACGACGAGATCGACGCCGCCCCCGAGGAGCGCGCCCGCGGCATCACCATCAACACCGCCACCGTCGAGTACGAGACCGAGAACCGCCACTACGCCCACGTCGACTGCCCCGGCCACGCCGACTACGTCAAGAACATGATCACCGGCGCTGCCCAGATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGCCCAATGCCCCAAACCAAAGAACACATTCTTTTGGCCAAACAAGTCGGCGTTCCCAACATTGTCGTCTTCCTCAACAAACAGGACCAGGTTGATGACGAGGAGCTTCTTCAGTTAGTAGAATTGGAGGTCCGGGAGCTTCTTTCCAAGTACGAGTTCCCCGGAGACGATGTTCCGATTATCTCCGGTTCCGCTTTGCTGTCTTTGGAAGCTTTGATGGCCAACCCTGCCATCAAGCGCGGCGAAAACCAATGGGTTGATAAAATTTACGAGCTCATGGAAGCTGTGGATGACTACATTCCCATCCCTCAGCGCCAAACTGAACTTCCCTTTTTGCTGGCCATTGAGGATGTTTTCACCATCACCGGTCGTGGAACCGTCGCCACCGGAAGGGTTGAGAGAGGTACTATTAGGGTTGGAGAGACTGTTGATATTGTTGGTGTGAAGGAGACTAGGAACACCACTGTGACTGGGGTGGAAATGTTTCAGAAGATTCTGGATGAGGCTTTGGCTGGGGACAATGTGGGCTTGTTGCTTAGGGGTATTCAGAAAACTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCTGGAACCATTACTCCTCACACCAAGTTTTCTGCAATTGTGTATGTCTTGAAGAAGGAAGAGGGTGGGAGGCACTCTCCCTTCTTTTCCGGCTACCGGCCTCAGTTCTACATGAGGACTACCGATGTTACTGGCAAGGTAACTGAAATTATGAATGACAAGGATGAAGAGTCCAAGATGGTTATGCCGGGCGACCGTGTTAAGCTGGTGGTTGAACTTATTGTGCCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGCAAAACTGTTGGAGCTGGTGTTATCCAATCCATCATTGAGTAG

Predicted protein sequences of Glyma.05g041900

Limit To All Plant Sequences

>Glyma.05g041900.1.p sequence-type=predicted peptide transcript=Glyma.05g041900.1 locus=Glyma.05g041900 ID=Glyma.05g041900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAISWAAATTSKLAYPPHVHFSPSPSSNYLFLKTHKPSATHLSSSFIHPTTILHLAAANTTTRRRSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNIVVFLNKQDQVDDEELLQLVELEVRELLSKYEFPGDDVPIISGSALLSLEALMANPAIKRGENQWVDKIYELMEAVDDYIPIPQRQTELPFLLAIEDVFTITGRGTVATGRVERGTIRVGETVDIVGVKETRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFSGYRPQFYMRTTDVTGKVTEIMNDKDEESKMVMPGDRVKLVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE*

>Glyma.05g041900.2.p sequence-type=predicted peptide transcript=Glyma.05g041900.2 locus=Glyma.05g041900 ID=Glyma.05g041900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAISWAAATTSKLAYPPHVHFSPSPSSNYLFLKTHKPSATHLSSSFIHPTTILHLAAANTTTRRRSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNIVVFLNKQDQVDDEELLQLVELEVRELLSKYEFPGDDVPIISGSALLSLEALMANPAIKRGENQWVDKIYELMEAVDDYIPIPQRQTELPFLLAIEDVFTITGRGTVATGRVERGTIRVGETVDIVGVKETRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFSGYRPQFYMRTTDVTGKVTEIMNDKDEESKMVMPGDRVKLVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE*

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