SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.05g040400

Feature Type:gene_model
Chromosome:Gm05
Start:3610681
stop:3617683
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g040400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G24670.1AT tryptophan aminotransferase related 2 JGI N/AIEA
GO:0009058GO-bp biosynthetic process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0016846GO-mf carbon-sulfur lyase activity EnsemblGenomesN/AIEA
GO:0016846GO-mf carbon-sulfur lyase activity JGI N/AIEA
GO:0030170GO-mf pyridoxal phosphate binding JGI N/AIEA
KOG0257 KOG Kynurenine aminotransferase, glutamine transaminase K JGI N/AIEA
PTHR11751Panther SUBGROUP I AMINOTRANSFERASE RELATED JGI N/AIEA
PTHR11751:SF162Panther JGI N/AIEA
PF04864PFAM Allinase JGI N/AIEA
PWYDQC-4SoyCyc9 indole-3-acetate biosynthesis I Plant Metabolic Network ISS
GN7V-67848SoyCyc9-rxn L-tryptophan:2-oxoglutarate aminotransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.05g040400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g040400 not represented in the dataset
Glyma.05g040400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g040400
ParalogEvidenceComments
Glyma.17g086500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g040400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g02521 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g040400
>Glyma.05g040400.2 sequence-type=transcript locus=Glyma.05g040400 ID=Glyma.05g040400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGTTTTCAAGAACCAGCATCGGAAAGCTGTGAATTTCCTGGTAAATCCAACTCAGGATTTTTTTATTACTGTGATAAATAATACTACACTACTGTCTCATAAACTCTCTTCTACCATTCATTCTCACTTCACAACCATTCCCCTTCCCTCGTACCACAACCCTCCTCATTTAATTTTTAGGAAATGTATTATTATGAAGTGACTTTTATTCCTTACTTTGATTCCGCCATGCTTTCTTTAATATTATCTTCTTTGTCCATTGCCACTTATGTCCACCAAATTCCGCAAAAAGTTTCAGAAGATTTTGAAGACTGGATTCAAATTCTAAGGCTCCCTCTTTCACACTTGTTCTGAATTTCAGGCTTTCTAATTAATTCAAACTTTTTCCGTTTCACAACCGATTCCTTTAAATTACCATTCAGAGGAATAACGGTTTTGGTTCGGGATTTCATCAGCATCACCGCCCCGAACCGTTATCTTTTAACATCTCTACCGAACACTTGTCGCAAGAGCTCTTTATTGCAACCATAGTTTATCAGAGGatttctagtgcttttgtgtttttgttGGAAGATGGCTAAACTTGCAGTTCCACCTTTGCTTTCTCTGAGGCACTTCCTGGTGCTATCAATTGCTTTGAATATGCAGATTCTGATAGAGAGGGGCATCTTATCCACAAATCACGTTTGGCCATGTCCTCTACTTCGTCTCTCGTTAATTCTACTCGTGCAGATCATCCAGGAGGAAGGGAAACAGTGATCAACTTGGACCATGGAGACCCAACAATATATGAAAGATTTTGGAGACAAGTGGGTGACAAGACCACAATCATAATTCCAGGATGGCAATCCTTGAGTTATTTTTCTGATGGCTCAAACATTTGCTGGTTTTTAGAGACCGAATTTGCAAGGGAAGTAGTGAGGTTGCACAAAGTGGTGGGTAACGCTGTGACAGAAGGTCGCCATATTGTTGTTGGGACAGGTTCCTCTCAGCTAATTCTGGCTGCCCTTTATGCTCTGTCCTCGCCTGATGCTGCTGAACCAATCAGCGTGGTATCTGCCGCACCCTATTATTCGTCTTACCCATCAATGGCAGATTACCAGAAATCAGGACTTTATAAATGGGCTGGTGATGCAGAGAATTTTGACAAAGAGGGTCCTTATATTGAGCTTGTTACTTCTCCCAATAACCCTGATGGACATAGAAGGAAAGCAATGGTCAACCGAAGCCAGGGACAATTCATTCATGACCTTGCCTATTATTGGCCTCAATACACTCCAATATCATCCCCTTCAGATCATGATCTCACTCTTTTCACTGTCTCAAAAACCACTGGTCATGCAGGAATGCGCATAGGGTGGGCTATTGTCAAAGATAAAGAGGTAGCAAAGAAAATGACTAAATTCATAGAGATAAGTACAATCGGTGTCTCGAAGGATTCTCAACTCAGAGCTGCCAAGGTTTTAAAGGCAGTGTCTGACAGCTGCGAACAAGAAAACTCCCAAGATGGGGAATCATTTTTCACGCACAGCTATAACATAATGGCCCAAAGATGGAAGCAACTGAGAGCAGTAGTTGAGGCCGGTGATTTGTTCACTTTGCCACAATTTTCTCCTGCATTCTGCACCTTCTTTGGTCAGGAGACGGAGCCTCAACCAGCTTTCATATGGTTGAAGTGTGAAGGAGATATAGAGGACTGCGAAAGCTTGCTTCGAGAACACAAAATTGTAGCAAGAAGTGGGAGACACTTTGGGGCTAGCCCAAAATACGTAAGAATTAGCATGCTGGATACTGATGAAACTTTTATACAGTTAATAGATAGACTATCAGCCATACAACAAGGAAAATGAAAAATTTATCCCTGATGTATATGTATAACAAATAAAAGGTCATAGTTCATATATAATATTCGGCCGTGCAATATTCTCTGATCCATTCATATATAAGAATATTGTTTTCTCCTTAACATATATACGG

>Glyma.05g040400.3 sequence-type=transcript locus=Glyma.05g040400 ID=Glyma.05g040400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTATCTCACAACttgtgtgttctgtcttgttttgatttcagatttctagtgcttttgtgtttttgttGGAAGATGGCTAAACTTGCAGTTCCACCTTTGCTTTCTCTGAGGCACTTCCTGGTGCTATCAATTGCTTTGAATGTGAGTTTGATTCTGAGGACTGTGTATTATGAGAGTGAAAAAGGAAGCAAAGGGTTTTGTTTGAACAAAAAAATGATGGCAGATGCAGATTCTGATAGAGAGGGGCATCTTATCCACAAATCACGTTTGGCCATGTCCTCTACTTCGTCTCTCGTTAATTCTACTCGTGCAGATCATCCAGGAGGAAGGGAAACAGTGATCAACTTGGACCATGGAGACCCAACAATATATGAAAGATTTTGGAGACAAGTGGGTGACAAGACCACAATCATAATTCCAGGATGGCAATCCTTGAGTTATTTTTCTGATGGCTCAAACATTTGCTGGTTTTTAGAGACCGAATTTGCAAGGGAAGTAGTGAGGTTGCACAAAGTGGTGGGTAACGCTGTGACAGAAGGTCGCCATATTGTTGTTGGGACAGGTTCCTCTCAGCTAATTCTGGCTGCCCTTTATGCTCTGTCCTCGCCTGATGCTGCTGAACCAATCAGCGTGGTATCTGCCGCACCCTATTATTCGTCTTACCCATCAATGGCAGATTACCAGAAATCAGGACTTTATAAATGGGCTGGTGATGCAGAGAATTTTGACAAAGAGGGTCCTTATATTGAGCTTGTTACTTCTCCCAATAACCCTGATGGACATAGAAGGAAAGCAATGGTCAACCGAAGCCAGGGACAATTCATTCATGACCTTGCCTATTATTGGCCTCAATACACTCCAATATCATCCCCTTCAGATCATGATCTCACTCTTTTCACTGTCTCAAAAACCACTGGTCATGCAGGAATGCGCATAGGGTGGGCTATTGTCAAAGATAAAGAGGTAGCAAAGAAAATGACTAAATTCATAGAGATAAGTACAATCGGTGTCTCGAAGGATTCTCAACTCAGAGCTGCCAAGGTTTTAAAGGCAGTGTCTGACAGCTGCGAACAAGAAAACTCCCAAGATGGGGAATCATTTTTCACGCACAGCTATAACATAATGGCCCAAAGATGGAAGCAACTGAGAGCAGTAGTTGAGGCCGGTGATTTGTTCACTTTGCCACAATTTTCTCCTGCATTCTGCACCTTCTTTGGTCAGGAGACGGAGCCTCAACCAGCTTTCATATGGTTGAAGTGTGAAGGAGATATAGAGGACTGCGAAAGCTTGCTTCGAGAACACAAAATTGTAGCAAGAAGTGGGAGACACTTTGGGGCTAGCCCAAAATACGTAAGAATTAGCATGCTGGATACTGATGAAACTTTTATACAGTTAATAGATAGACTATCAGCCATACAACAAGGAAAATGAAAAATTTATCCCTGATGTATATGTATAACAAATAAAAGGTCATAGTTCATATATAATATTCGGCCGTGCAATATTCTCTGATCCATTCATATATAAGAATATTGTTTTCTCCTTAACATATATACGG
Coding sequences of Glyma.05g040400
>Glyma.05g040400.1 sequence-type=CDS polypeptide=Glyma.05g040400.1.p locus=Glyma.05g040400 ID=Glyma.05g040400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTAAACTTGCAGTTCCACCTTTGCTTTCTCTGAGGCACTTCCTGGTGCTATCAATTGCTTTGAATGTGAGTTTGATTCTGAGGACTGTGTATTATGAGAGTGAAAAAGGAAGCAAAGGGTTTTGTTTGAACAAAAAAATGATGGCAGATGCAGATTCTGATAGAGAGGGGCATCTTATCCACAAATCACGTTTGGCCATGTCCTCTACTTCGTCTCTCGTTAATTCTACTCGTGCAGATCATCCAGGAGGAAGGGAAACAGTGATCAACTTGGACCATGGAGACCCAACAATATATGAAAGATTTTGGAGACAAGTGGGTGACAAGACCACAATCATAATTCCAGGATGGCAATCCTTGAGTTATTTTTCTGATGGCTCAAACATTTGCTGGTTTTTAGAGACCGAATTTGCAAGGGAAGTAGTGAGGTTGCACAAAGTGGTGGGTAACGCTGTGACAGAAGGTCGCCATATTGTTGTTGGGACAGGTTCCTCTCAGCTAATTCTGGCTGCCCTTTATGCTCTGTCCTCGCCTGATGCTGCTGAACCAATCAGCGTGGTATCTGCCGCACCCTATTATTCGTCTTACCCATCAATGGCAGATTACCAGAAATCAGGACTTTATAAATGGGCTGGTGATGCAGAGAATTTTGACAAAGAGGGTCCTTATATTGAGCTTGTTACTTCTCCCAATAACCCTGATGGACATAGAAGGAAAGCAATGGTCAACCGAAGCCAGGGACAATTCATTCATGACCTTGCCTATTATTGGCCTCAATACACTCCAATATCATCCCCTTCAGATCATGATCTCACTCTTTTCACTGTCTCAAAAACCACTGGTCATGCAGGAATGCGCATAGGGTGGGCTATTGTCAAAGATAAAGAGGTAGCAAAGAAAATGACTAAATTCATAGAGATAAGTACAATCGGTGTCTCGAAGGATTCTCAACTCAGAGCTGCCAAGGTTTTAAAGGCAGTGTCTGACAGCTGCGAACAAGAAAACTCCCAAGATGGGGAATCATTTTTCACGCACAGCTATAACATAATGGCCCAAAGATGGAAGCAACTGAGAGCAGTAGTTGAGGCCGGTGATTTGTTCACTTTGCCACAATTTTCTCCTGCATTCTGCACCTTCTTTGGTCAGGAGACGGAGCCTCAACCAGCTTTCATATGGTTGAAGTGTGAAGGAGATATAGAGGACTGCGAAAGCTTGCTTCGAGAACACAAAATTGTAGCAAGAAGTGGGAGACACTTTGGGGCTAGCCCAAAATACGTAAGAATTAGCATGCTGGATACTGATGAAACTTTTATACAGTTAATAGATAGACTATCAGCCATACAACAAGGAAAATGA

>Glyma.05g040400.2 sequence-type=CDS polypeptide=Glyma.05g040400.2.p locus=Glyma.05g040400 ID=Glyma.05g040400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCTCTACTTCGTCTCTCGTTAATTCTACTCGTGCAGATCATCCAGGAGGAAGGGAAACAGTGATCAACTTGGACCATGGAGACCCAACAATATATGAAAGATTTTGGAGACAAGTGGGTGACAAGACCACAATCATAATTCCAGGATGGCAATCCTTGAGTTATTTTTCTGATGGCTCAAACATTTGCTGGTTTTTAGAGACCGAATTTGCAAGGGAAGTAGTGAGGTTGCACAAAGTGGTGGGTAACGCTGTGACAGAAGGTCGCCATATTGTTGTTGGGACAGGTTCCTCTCAGCTAATTCTGGCTGCCCTTTATGCTCTGTCCTCGCCTGATGCTGCTGAACCAATCAGCGTGGTATCTGCCGCACCCTATTATTCGTCTTACCCATCAATGGCAGATTACCAGAAATCAGGACTTTATAAATGGGCTGGTGATGCAGAGAATTTTGACAAAGAGGGTCCTTATATTGAGCTTGTTACTTCTCCCAATAACCCTGATGGACATAGAAGGAAAGCAATGGTCAACCGAAGCCAGGGACAATTCATTCATGACCTTGCCTATTATTGGCCTCAATACACTCCAATATCATCCCCTTCAGATCATGATCTCACTCTTTTCACTGTCTCAAAAACCACTGGTCATGCAGGAATGCGCATAGGGTGGGCTATTGTCAAAGATAAAGAGGTAGCAAAGAAAATGACTAAATTCATAGAGATAAGTACAATCGGTGTCTCGAAGGATTCTCAACTCAGAGCTGCCAAGGTTTTAAAGGCAGTGTCTGACAGCTGCGAACAAGAAAACTCCCAAGATGGGGAATCATTTTTCACGCACAGCTATAACATAATGGCCCAAAGATGGAAGCAACTGAGAGCAGTAGTTGAGGCCGGTGATTTGTTCACTTTGCCACAATTTTCTCCTGCATTCTGCACCTTCTTTGGTCAGGAGACGGAGCCTCAACCAGCTTTCATATGGTTGAAGTGTGAAGGAGATATAGAGGACTGCGAAAGCTTGCTTCGAGAACACAAAATTGTAGCAAGAAGTGGGAGACACTTTGGGGCTAGCCCAAAATACGTAAGAATTAGCATGCTGGATACTGATGAAACTTTTATACAGTTAATAGATAGACTATCAGCCATACAACAAGGAAAATGA

>Glyma.05g040400.3 sequence-type=CDS polypeptide=Glyma.05g040400.3.p locus=Glyma.05g040400 ID=Glyma.05g040400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTAAACTTGCAGTTCCACCTTTGCTTTCTCTGAGGCACTTCCTGGTGCTATCAATTGCTTTGAATGTGAGTTTGATTCTGAGGACTGTGTATTATGAGAGTGAAAAAGGAAGCAAAGGGTTTTGTTTGAACAAAAAAATGATGGCAGATGCAGATTCTGATAGAGAGGGGCATCTTATCCACAAATCACGTTTGGCCATGTCCTCTACTTCGTCTCTCGTTAATTCTACTCGTGCAGATCATCCAGGAGGAAGGGAAACAGTGATCAACTTGGACCATGGAGACCCAACAATATATGAAAGATTTTGGAGACAAGTGGGTGACAAGACCACAATCATAATTCCAGGATGGCAATCCTTGAGTTATTTTTCTGATGGCTCAAACATTTGCTGGTTTTTAGAGACCGAATTTGCAAGGGAAGTAGTGAGGTTGCACAAAGTGGTGGGTAACGCTGTGACAGAAGGTCGCCATATTGTTGTTGGGACAGGTTCCTCTCAGCTAATTCTGGCTGCCCTTTATGCTCTGTCCTCGCCTGATGCTGCTGAACCAATCAGCGTGGTATCTGCCGCACCCTATTATTCGTCTTACCCATCAATGGCAGATTACCAGAAATCAGGACTTTATAAATGGGCTGGTGATGCAGAGAATTTTGACAAAGAGGGTCCTTATATTGAGCTTGTTACTTCTCCCAATAACCCTGATGGACATAGAAGGAAAGCAATGGTCAACCGAAGCCAGGGACAATTCATTCATGACCTTGCCTATTATTGGCCTCAATACACTCCAATATCATCCCCTTCAGATCATGATCTCACTCTTTTCACTGTCTCAAAAACCACTGGTCATGCAGGAATGCGCATAGGGTGGGCTATTGTCAAAGATAAAGAGGTAGCAAAGAAAATGACTAAATTCATAGAGATAAGTACAATCGGTGTCTCGAAGGATTCTCAACTCAGAGCTGCCAAGGTTTTAAAGGCAGTGTCTGACAGCTGCGAACAAGAAAACTCCCAAGATGGGGAATCATTTTTCACGCACAGCTATAACATAATGGCCCAAAGATGGAAGCAACTGAGAGCAGTAGTTGAGGCCGGTGATTTGTTCACTTTGCCACAATTTTCTCCTGCATTCTGCACCTTCTTTGGTCAGGAGACGGAGCCTCAACCAGCTTTCATATGGTTGAAGTGTGAAGGAGATATAGAGGACTGCGAAAGCTTGCTTCGAGAACACAAAATTGTAGCAAGAAGTGGGAGACACTTTGGGGCTAGCCCAAAATACGTAAGAATTAGCATGCTGGATACTGATGAAACTTTTATACAGTTAATAGATAGACTATCAGCCATACAACAAGGAAAATGA
Predicted protein sequences of Glyma.05g040400
>Glyma.05g040400.1.p sequence-type=predicted peptide transcript=Glyma.05g040400.1 locus=Glyma.05g040400 ID=Glyma.05g040400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKLAVPPLLSLRHFLVLSIALNVSLILRTVYYESEKGSKGFCLNKKMMADADSDREGHLIHKSRLAMSSTSSLVNSTRADHPGGRETVINLDHGDPTIYERFWRQVGDKTTIIIPGWQSLSYFSDGSNICWFLETEFAREVVRLHKVVGNAVTEGRHIVVGTGSSQLILAALYALSSPDAAEPISVVSAAPYYSSYPSMADYQKSGLYKWAGDAENFDKEGPYIELVTSPNNPDGHRRKAMVNRSQGQFIHDLAYYWPQYTPISSPSDHDLTLFTVSKTTGHAGMRIGWAIVKDKEVAKKMTKFIEISTIGVSKDSQLRAAKVLKAVSDSCEQENSQDGESFFTHSYNIMAQRWKQLRAVVEAGDLFTLPQFSPAFCTFFGQETEPQPAFIWLKCEGDIEDCESLLREHKIVARSGRHFGASPKYVRISMLDTDETFIQLIDRLSAIQQGK*

>Glyma.05g040400.2.p sequence-type=predicted peptide transcript=Glyma.05g040400.2 locus=Glyma.05g040400 ID=Glyma.05g040400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSTSSLVNSTRADHPGGRETVINLDHGDPTIYERFWRQVGDKTTIIIPGWQSLSYFSDGSNICWFLETEFAREVVRLHKVVGNAVTEGRHIVVGTGSSQLILAALYALSSPDAAEPISVVSAAPYYSSYPSMADYQKSGLYKWAGDAENFDKEGPYIELVTSPNNPDGHRRKAMVNRSQGQFIHDLAYYWPQYTPISSPSDHDLTLFTVSKTTGHAGMRIGWAIVKDKEVAKKMTKFIEISTIGVSKDSQLRAAKVLKAVSDSCEQENSQDGESFFTHSYNIMAQRWKQLRAVVEAGDLFTLPQFSPAFCTFFGQETEPQPAFIWLKCEGDIEDCESLLREHKIVARSGRHFGASPKYVRISMLDTDETFIQLIDRLSAIQQGK*

>Glyma.05g040400.3.p sequence-type=predicted peptide transcript=Glyma.05g040400.3 locus=Glyma.05g040400 ID=Glyma.05g040400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKLAVPPLLSLRHFLVLSIALNVSLILRTVYYESEKGSKGFCLNKKMMADADSDREGHLIHKSRLAMSSTSSLVNSTRADHPGGRETVINLDHGDPTIYERFWRQVGDKTTIIIPGWQSLSYFSDGSNICWFLETEFAREVVRLHKVVGNAVTEGRHIVVGTGSSQLILAALYALSSPDAAEPISVVSAAPYYSSYPSMADYQKSGLYKWAGDAENFDKEGPYIELVTSPNNPDGHRRKAMVNRSQGQFIHDLAYYWPQYTPISSPSDHDLTLFTVSKTTGHAGMRIGWAIVKDKEVAKKMTKFIEISTIGVSKDSQLRAAKVLKAVSDSCEQENSQDGESFFTHSYNIMAQRWKQLRAVVEAGDLFTLPQFSPAFCTFFGQETEPQPAFIWLKCEGDIEDCESLLREHKIVARSGRHFGASPKYVRISMLDTDETFIQLIDRLSAIQQGK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo