|
A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G27520.1 | AT | Glycosyl hydrolase family 47 protein | JGI | N/A | IEA |
GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
GO:0016020 | GO-cc | membrane | JGI | N/A | IEA |
GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
GO:0004571 | GO-mf | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity | EnsemblGenomes | N/A | IEA |
GO:0004571 | GO-mf | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity | JGI | N/A | IEA |
GO:0005509 | GO-mf | calcium ion binding | EnsemblGenomes | N/A | IEA |
GO:0005509 | GO-mf | calcium ion binding | JGI | N/A | IEA |
GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
GO:0016798 | GO-mf | hydrolase activity, acting on glycosyl bonds | EnsemblGenomes | N/A | IEA |
PTHR11742 | Panther | MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED | JGI | N/A | IEA |
PTHR11742:SF19 | Panther | JGI | N/A | IEA | |
PF01532 | PFAM | Glycosyl hydrolase family 47 | JGI | N/A | IEA |
Glyma.05g034300 not represented in the dataset |
Glyma.05g034300 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.17g092900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
>Glyma.05g034300.1 sequence-type=CDS polypeptide=Glyma.05g034300.1.p locus=Glyma.05g034300 ID=Glyma.05g034300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTTCCTCCTCGCCATTACACAACATGTCTTCTTCTCTTCCTCCTCGTACTCTCCGACTTCTCCATTTCCGAATCACAATCCCCCTGGGCTGCCAAGAAAAAACGCATGAGAGACAAAGTTCGCAATATGTTTTACCACGCATATGACAACTATATGACTCATGCATTTCCGCATGATGAGCTTAAGCCTATCTCTAAAACTTTCACCAACTCTCTAAGTGAGTTGGGAAATTTGAAGCTTGAACACTTGCCTCAAGACTACAACGGCTCTGCCCTTACGCTTATTGAATCACTGTCTAGCCTTGTTATTATGGGAAATTATACTGAATTCGAGAGGGCAGTGCTCTGGCTTTCAGAAAATCTGACATTTGATGTTGATGCGCGCATAAATCTTTTTGAGTGCAACATAAGAGTTCTTGGAGGACTTGTCTCTGCTCATTTACTTGCATCTGATTCTTCAAAGAAGTTTTTTCAAGGAGCTTACAAAAATCAGTTGCTAGCTCTTGCTGAAGATTTAGGGAAACGCTTTCTACCAGCATTCAATACGCCTACTGGATTGCCGTATGCATGGATTAACTTAAAGGTACTACATAGAGCATTGAAAGTCTGA
>Glyma.05g034300.1.p sequence-type=predicted peptide transcript=Glyma.05g034300.1 locus=Glyma.05g034300 ID=Glyma.05g034300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MFPPRHYTTCLLLFLLVLSDFSISESQSPWAAKKKRMRDKVRNMFYHAYDNYMTHAFPHDELKPISKTFTNSLSELGNLKLEHLPQDYNGSALTLIESLSSLVIMGNYTEFERAVLWLSENLTFDVDARINLFECNIRVLGGLVSAHLLASDSSKKFFQGAYKNQLLALAEDLGKRFLPAFNTPTGLPYAWINLKVLHRALKV*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||