Glyma.05g031100

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Report for Sequence Feature Glyma.05g031100

Feature Type:	gene_model
Chromosome:	Gm05
Start:	2705628
stop:	2711940
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05g031100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62640.1	AT	proline-rich family protein	JGI	N/A	IEA
AT5G62640.3	AT	proline-rich family protein	JGI	N/A	IEA
GO:0006396	GO-bp	RNA processing	EnsemblGenomes	N/A	IEA
GO:0006396	GO-bp	RNA processing	JGI	N/A	IEA
GO:0045292	GO-bp	mRNA cis splicing, via spliceosome	EnsemblGenomes	N/A	IEA
GO:0005681	GO-cc	spliceosomal complex	EnsemblGenomes	N/A	IEA
KOG4672	KOG	Uncharacterized conserved low complexity protein	JGI	N/A	IEA
PTHR13361	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR13361:SF1	Panther	WW DOMAIN-BINDING PROTEIN 11	JGI	N/A	IEA
PF09429	PFAM	WW domain binding protein 11	JGI	N/A	IEA

Expression Patterns of Glyma.05g031100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g031100 not represented in the dataset	Glyma.05g031100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.05g031100

Paralog	Evidence	Comments
Glyma.17g095700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g031100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma05g01510	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.05g031100

Limit To All Plant Sequences

>Glyma.05g031100.2 sequence-type=transcript locus=Glyma.05g031100 ID=Glyma.05g031100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGGGTTTATCACACTCTGAATATGAAGACAAAATGCGGGAAAAGGGTGAGACCCCAGTTATGTTCAGTCATTTGGGGCCTCCTCGAAGGAGAACAACTGCAGAAGAAGAAGAGAGGGTTAAGCACCCGAAGCCTGAGGACTCTGTTTATTATCATCCTACATTAAACCCTACAGGGGCTCCACCACCAGGGAAACCTCCTATGTTTAAATCATCTATAGGACCCAGAATTCCTTTGTCTGgtgctgcatcatcctcggcaacagatttggagaatgatgTATTAACTGTACCACCACCTCCCCCGCCGCCACCACTGCCTGATGGTAGCAGTGCGAGTTCAGCAGATGGTGCCGTTTTATCTGCATCTTTGCCATTGCCCCCTCCCCCTCCCATGCCTCCAAAGCCTGCTACTGCTGTGCCTACATCATTAccaccacctcctttgcctcctccacctcctggtcccccacctAAAGAACAAGTTGCAAATCGCACTCTTCCCCCTCCACCCCCGCCCCTACAACAGTCTCAACCTCCTCCACCTGGTACCAGTGGAGGTGAAGGGAGAAATCAGTCTGCATTTGCATTGATAGATGATTCACCTTCCAAGGAGCCTGGCCAGGTGCAGCTTCCTCCACCTCCTCCACCTAGTCAGGTGCCACCCAAGGCTGGTGCTATCCAGTCTGATGGTGCTGTGCTTTCTACTGAGAATAAGAATTCACTGTCAAGCCAGGAGATCCCAAAAATGGTTGCCGGGCATCCTCCTCCAAGGCAACAACCCCCTGTTCCAGGACCCACCTTAATCCCAAGTTTACAGCCTGATGTATTACTCCCTGGAATATCTCGTTTCCCTCCACCCCCGCCACCACCCGATATGAGACCTTCTTTGTCCGTCACAGGGCTACATGCTCAGGCACCACCTCCTGGAATGATGGTCCCCCTAATGCCAAGGCCACCATATGGtcctccacctggtcctcctccaatgatgagacctccacttcctcctggtcctcctccAAACTTCCAGGAAGAGGATCATATAGCAACTAGGCCACCTCCTCCTCCTCCGAAACCATCATATGTTAAATCTGCTGCTTCTACTGTTGTTAAAAGGCCATTAGCTCAACACACTCCAGAACTAACAGCCATGGTTCCTGCATCTGTGCGAGTGAGAAGAGAAGCGGCAATGTCTAAAACAAAGCCAAAACCGGCAGTGTCAACCTCTAGGGCAGTCTCTGGTACATCTGGACCAACTATTGTGAAATCAGAGTCGGTGAGCTTGTCATCAGCTCCAAAAACACAGAGCATTGATGACTCATATACGGCTTTCTTAGAAGACATGAAAGCCCTTGGTGCACTTGATGGTTGAGATCGTTGTGAGTGCCGGTGCTGGATGATGGTGAGGGCGTGCACAATGAAATTTGCTTAGTTCAAATATCCTCTCTCGTGACCTCACTCAATTTTTTATTCTTGGTGATCAAGTCTAATCATCAAGACCATGTATACTCTCTTTTGTGACTCCTCATTCATCTCCTTTATCTCTCTAGTTTAAATTAGTGCACTTTTAGTTGATAATAATATATGCATTGTTAACCAATGGTGTGTTGATACTTCAATAAAAAAAAAAGTTACATTCTATAGCTACGTTTAAAAAAAATTAAAATTGAGAGAAAAGAAGTGAAGATTGACATGCAACGTTTTTTAAAGAAAAGTAAACTAGTGTAAATGTTTTTTAAAAAGTATATCCAATTTATTGTATAAGAGTGGATTAAACAAATAAAACTAATCATATTTTTTTTT

Coding sequences of Glyma.05g031100

Limit To All Plant Sequences

>Glyma.05g031100.1 sequence-type=CDS polypeptide=Glyma.05g031100.1.p locus=Glyma.05g031100 ID=Glyma.05g031100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGACGACGAAGGGCGGCAAGGTCATGAACCCTACCGATGCTTACCGAAAGGAGATTCGGAAGAAAGAATTGAAAAGGAATAAGAAAGAAAGAAAGAAGGTGAGGGAGGTGGGGATTTTGAAGAAAGATCCTGATCAATTGAAGAAGCAGATTGAGAACTTGGAAATGATGAAGGCTGATGGTGCTTTGGATAAAGCAAGAAAGCACAAGAAGAGACAGCTACAAGATACACTTAATCTTGTCATAAAGAAGAGGAGGGAATATGAAGACAAAATGCGGGAAAAGGGTGAGACCCCAGTTATGTTCAGTCATTTGGGGCCTCCTCGAAGGAGAACAACTGCAGAAGAAGAAGAGAGGGTTAAGCACCCGAAGCCTGAGGACTCTGTTTATTATCATCCTACATTAAACCCTACAGGGGCTCCACCACCAGGGAAACCTCCTATGTTTAAATCATCTATAGGACCCAGAATTCCTTTGTCTGGTGCTGCATCATCCTCGGCAACAGATTTGGAGAATGATGTATTAACTGTACCACCACCTCCCCCGCCGCCACCACTGCCTGATGGTAGCAGTGCGAGTTCAGCAGATGGTGCCGTTTTATCTGCATCTTTGCCATTGCCCCCTCCCCCTCCCATGCCTCCAAAGCCTGCTACTGCTGTGCCTACATCATTACCACCACCTCCTTTGCCTCCTCCACCTCCTGGTCCCCCACCTAAAGAACAAGTTGCAAATCGCACTCTTCCCCCTCCACCCCCGCCCCTACAACAGTCTCAACCTCCTCCACCTGGTACCAGTGGAGGTGAAGGGAGAAATCAGTCTGCATTTGCATTGATAGATGATTCACCTTCCAAGGAGCCTGGCCAGGTGCAGCTTCCTCCACCTCCTCCACCTAGTCAGGTGCCACCCAAGGCTGGTGCTATCCAGTCTGATGGTGCTGTGCTTTCTACTGAGAATAAGAATTCACTGTCAAGCCAGGAGATCCCAAAAATGGTTGCCGGGCATCCTCCTCCAAGGCAACAACCCCCTGTTCCAGGACCCACCTTAATCCCAAGTTTACAGCCTGATGTATTACTCCCTGGAATATCTCGTTTCCCTCCACCCCCGCCACCACCCGATATGAGACCTTCTTTGTCCGTCACAGGGCTACATGCTCAGGCACCACCTCCTGGAATGATGGTCCCCCTAATGCCAAGGCCACCATATGGTCCTCCACCTGGTCCTCCTCCAATGATGAGACCTCCACTTCCTCCTGGTCCTCCTCCAAACTTCCAGGAAGAGGATCATATAGCAACTAGGCCACCTCCTCCTCCTCCGAAACCATCATATGTTAAATCTGCTGCTTCTACTGTTGTTAAAAGGCCATTAGCTCAACACACTCCAGAACTAACAGCCATGGTTCCTGCATCTGTGCGAGTGAGAAGAGAAGCGGCAATGTCTAAAACAAAGCCAAAACCGGCAGTGTCAACCTCTAGGGCAGTCTCTGGTACATCTGGACCAACTATTGTGAAATCAGAGTCGGTGAGCTTGTCATCAGCTCCAAAAACACAGAGCATTGATGACTCATATACGGCTTTCTTAGAAGACATGAAAGCCCTTGGTGCACTTGATGGTTGA

>Glyma.05g031100.2 sequence-type=CDS polypeptide=Glyma.05g031100.2.p locus=Glyma.05g031100 ID=Glyma.05g031100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGGGAAAAGGGTGAGACCCCAGTTATGTTCAGTCATTTGGGGCCTCCTCGAAGGAGAACAACTGCAGAAGAAGAAGAGAGGGTTAAGCACCCGAAGCCTGAGGACTCTGTTTATTATCATCCTACATTAAACCCTACAGGGGCTCCACCACCAGGGAAACCTCCTATGTTTAAATCATCTATAGGACCCAGAATTCCTTTGTCTGGTGCTGCATCATCCTCGGCAACAGATTTGGAGAATGATGTATTAACTGTACCACCACCTCCCCCGCCGCCACCACTGCCTGATGGTAGCAGTGCGAGTTCAGCAGATGGTGCCGTTTTATCTGCATCTTTGCCATTGCCCCCTCCCCCTCCCATGCCTCCAAAGCCTGCTACTGCTGTGCCTACATCATTACCACCACCTCCTTTGCCTCCTCCACCTCCTGGTCCCCCACCTAAAGAACAAGTTGCAAATCGCACTCTTCCCCCTCCACCCCCGCCCCTACAACAGTCTCAACCTCCTCCACCTGGTACCAGTGGAGGTGAAGGGAGAAATCAGTCTGCATTTGCATTGATAGATGATTCACCTTCCAAGGAGCCTGGCCAGGTGCAGCTTCCTCCACCTCCTCCACCTAGTCAGGTGCCACCCAAGGCTGGTGCTATCCAGTCTGATGGTGCTGTGCTTTCTACTGAGAATAAGAATTCACTGTCAAGCCAGGAGATCCCAAAAATGGTTGCCGGGCATCCTCCTCCAAGGCAACAACCCCCTGTTCCAGGACCCACCTTAATCCCAAGTTTACAGCCTGATGTATTACTCCCTGGAATATCTCGTTTCCCTCCACCCCCGCCACCACCCGATATGAGACCTTCTTTGTCCGTCACAGGGCTACATGCTCAGGCACCACCTCCTGGAATGATGGTCCCCCTAATGCCAAGGCCACCATATGGTCCTCCACCTGGTCCTCCTCCAATGATGAGACCTCCACTTCCTCCTGGTCCTCCTCCAAACTTCCAGGAAGAGGATCATATAGCAACTAGGCCACCTCCTCCTCCTCCGAAACCATCATATGTTAAATCTGCTGCTTCTACTGTTGTTAAAAGGCCATTAGCTCAACACACTCCAGAACTAACAGCCATGGTTCCTGCATCTGTGCGAGTGAGAAGAGAAGCGGCAATGTCTAAAACAAAGCCAAAACCGGCAGTGTCAACCTCTAGGGCAGTCTCTGGTACATCTGGACCAACTATTGTGAAATCAGAGTCGGTGAGCTTGTCATCAGCTCCAAAAACACAGAGCATTGATGACTCATATACGGCTTTCTTAGAAGACATGAAAGCCCTTGGTGCACTTGATGGTTGA

Predicted protein sequences of Glyma.05g031100

Limit To All Plant Sequences

>Glyma.05g031100.1.p sequence-type=predicted peptide transcript=Glyma.05g031100.1 locus=Glyma.05g031100 ID=Glyma.05g031100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKTTKGGKVMNPTDAYRKEIRKKELKRNKKERKKVREVGILKKDPDQLKKQIENLEMMKADGALDKARKHKKRQLQDTLNLVIKKRREYEDKMREKGETPVMFSHLGPPRRRTTAEEEERVKHPKPEDSVYYHPTLNPTGAPPPGKPPMFKSSIGPRIPLSGAASSSATDLENDVLTVPPPPPPPPLPDGSSASSADGAVLSASLPLPPPPPMPPKPATAVPTSLPPPPLPPPPPGPPPKEQVANRTLPPPPPPLQQSQPPPPGTSGGEGRNQSAFALIDDSPSKEPGQVQLPPPPPPSQVPPKAGAIQSDGAVLSTENKNSLSSQEIPKMVAGHPPPRQQPPVPGPTLIPSLQPDVLLPGISRFPPPPPPPDMRPSLSVTGLHAQAPPPGMMVPLMPRPPYGPPPGPPPMMRPPLPPGPPPNFQEEDHIATRPPPPPPKPSYVKSAASTVVKRPLAQHTPELTAMVPASVRVRREAAMSKTKPKPAVSTSRAVSGTSGPTIVKSESVSLSSAPKTQSIDDSYTAFLEDMKALGALDG*

>Glyma.05g031100.2.p sequence-type=predicted peptide transcript=Glyma.05g031100.2 locus=Glyma.05g031100 ID=Glyma.05g031100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MREKGETPVMFSHLGPPRRRTTAEEEERVKHPKPEDSVYYHPTLNPTGAPPPGKPPMFKSSIGPRIPLSGAASSSATDLENDVLTVPPPPPPPPLPDGSSASSADGAVLSASLPLPPPPPMPPKPATAVPTSLPPPPLPPPPPGPPPKEQVANRTLPPPPPPLQQSQPPPPGTSGGEGRNQSAFALIDDSPSKEPGQVQLPPPPPPSQVPPKAGAIQSDGAVLSTENKNSLSSQEIPKMVAGHPPPRQQPPVPGPTLIPSLQPDVLLPGISRFPPPPPPPDMRPSLSVTGLHAQAPPPGMMVPLMPRPPYGPPPGPPPMMRPPLPPGPPPNFQEEDHIATRPPPPPPKPSYVKSAASTVVKRPLAQHTPELTAMVPASVRVRREAAMSKTKPKPAVSTSRAVSGTSGPTIVKSESVSLSSAPKTQSIDDSYTAFLEDMKALGALDG*

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