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Report for Sequence Feature Glyma.05g031100

Feature Type:gene_model
Chromosome:Gm05
Start:2705628
stop:2711940
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g031100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G62640.1AT proline-rich family protein JGI N/AIEA
AT5G62640.3AT proline-rich family protein JGI N/AIEA
GO:0006396GO-bp RNA processing EnsemblGenomesN/AIEA
GO:0006396GO-bp RNA processing JGI N/AIEA
GO:0045292GO-bp mRNA cis splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0005681GO-cc spliceosomal complex EnsemblGenomesN/AIEA
KOG4672 KOG Uncharacterized conserved low complexity protein JGI N/AIEA
PTHR13361Panther FAMILY NOT NAMED JGI N/AIEA
PTHR13361:SF1Panther WW DOMAIN-BINDING PROTEIN 11 JGI N/AIEA
PF09429PFAM WW domain binding protein 11 JGI N/AIEA

Expression Patterns of Glyma.05g031100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g031100
ParalogEvidenceComments
Glyma.17g095700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g031100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g01510 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g031100
>Glyma.05g031100.2 sequence-type=transcript locus=Glyma.05g031100 ID=Glyma.05g031100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGGGTTTATCACACTCTGAATATGAAGACAAAATGCGGGAAAAGGGTGAGACCCCAGTTATGTTCAGTCATTTGGGGCCTCCTCGAAGGAGAACAACTGCAGAAGAAGAAGAGAGGGTTAAGCACCCGAAGCCTGAGGACTCTGTTTATTATCATCCTACATTAAACCCTACAGGGGCTCCACCACCAGGGAAACCTCCTATGTTTAAATCATCTATAGGACCCAGAATTCCTTTGTCTGgtgctgcatcatcctcggcaacagatttggagaatgatgTATTAACTGTACCACCACCTCCCCCGCCGCCACCACTGCCTGATGGTAGCAGTGCGAGTTCAGCAGATGGTGCCGTTTTATCTGCATCTTTGCCATTGCCCCCTCCCCCTCCCATGCCTCCAAAGCCTGCTACTGCTGTGCCTACATCATTAccaccacctcctttgcctcctccacctcctggtcccccacctAAAGAACAAGTTGCAAATCGCACTCTTCCCCCTCCACCCCCGCCCCTACAACAGTCTCAACCTCCTCCACCTGGTACCAGTGGAGGTGAAGGGAGAAATCAGTCTGCATTTGCATTGATAGATGATTCACCTTCCAAGGAGCCTGGCCAGGTGCAGCTTCCTCCACCTCCTCCACCTAGTCAGGTGCCACCCAAGGCTGGTGCTATCCAGTCTGATGGTGCTGTGCTTTCTACTGAGAATAAGAATTCACTGTCAAGCCAGGAGATCCCAAAAATGGTTGCCGGGCATCCTCCTCCAAGGCAACAACCCCCTGTTCCAGGACCCACCTTAATCCCAAGTTTACAGCCTGATGTATTACTCCCTGGAATATCTCGTTTCCCTCCACCCCCGCCACCACCCGATATGAGACCTTCTTTGTCCGTCACAGGGCTACATGCTCAGGCACCACCTCCTGGAATGATGGTCCCCCTAATGCCAAGGCCACCATATGGtcctccacctggtcctcctccaatgatgagacctccacttcctcctggtcctcctccAAACTTCCAGGAAGAGGATCATATAGCAACTAGGCCACCTCCTCCTCCTCCGAAACCATCATATGTTAAATCTGCTGCTTCTACTGTTGTTAAAAGGCCATTAGCTCAACACACTCCAGAACTAACAGCCATGGTTCCTGCATCTGTGCGAGTGAGAAGAGAAGCGGCAATGTCTAAAACAAAGCCAAAACCGGCAGTGTCAACCTCTAGGGCAGTCTCTGGTACATCTGGACCAACTATTGTGAAATCAGAGTCGGTGAGCTTGTCATCAGCTCCAAAAACACAGAGCATTGATGACTCATATACGGCTTTCTTAGAAGACATGAAAGCCCTTGGTGCACTTGATGGTTGAGATCGTTGTGAGTGCCGGTGCTGGATGATGGTGAGGGCGTGCACAATGAAATTTGCTTAGTTCAAATATCCTCTCTCGTGACCTCACTCAATTTTTTATTCTTGGTGATCAAGTCTAATCATCAAGACCATGTATACTCTCTTTTGTGACTCCTCATTCATCTCCTTTATCTCTCTAGTTTAAATTAGTGCACTTTTAGTTGATAATAATATATGCATTGTTAACCAATGGTGTGTTGATACTTCAATAAAAAAAAAAGTTACATTCTATAGCTACGTTTAAAAAAAATTAAAATTGAGAGAAAAGAAGTGAAGATTGACATGCAACGTTTTTTAAAGAAAAGTAAACTAGTGTAAATGTTTTTTAAAAAGTATATCCAATTTATTGTATAAGAGTGGATTAAACAAATAAAACTAATCATATTTTTTTTT
Coding sequences of Glyma.05g031100
>Glyma.05g031100.1 sequence-type=CDS polypeptide=Glyma.05g031100.1.p locus=Glyma.05g031100 ID=Glyma.05g031100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGACGACGAAGGGCGGCAAGGTCATGAACCCTACCGATGCTTACCGAAAGGAGATTCGGAAGAAAGAATTGAAAAGGAATAAGAAAGAAAGAAAGAAGGTGAGGGAGGTGGGGATTTTGAAGAAAGATCCTGATCAATTGAAGAAGCAGATTGAGAACTTGGAAATGATGAAGGCTGATGGTGCTTTGGATAAAGCAAGAAAGCACAAGAAGAGACAGCTACAAGATACACTTAATCTTGTCATAAAGAAGAGGAGGGAATATGAAGACAAAATGCGGGAAAAGGGTGAGACCCCAGTTATGTTCAGTCATTTGGGGCCTCCTCGAAGGAGAACAACTGCAGAAGAAGAAGAGAGGGTTAAGCACCCGAAGCCTGAGGACTCTGTTTATTATCATCCTACATTAAACCCTACAGGGGCTCCACCACCAGGGAAACCTCCTATGTTTAAATCATCTATAGGACCCAGAATTCCTTTGTCTGGTGCTGCATCATCCTCGGCAACAGATTTGGAGAATGATGTATTAACTGTACCACCACCTCCCCCGCCGCCACCACTGCCTGATGGTAGCAGTGCGAGTTCAGCAGATGGTGCCGTTTTATCTGCATCTTTGCCATTGCCCCCTCCCCCTCCCATGCCTCCAAAGCCTGCTACTGCTGTGCCTACATCATTACCACCACCTCCTTTGCCTCCTCCACCTCCTGGTCCCCCACCTAAAGAACAAGTTGCAAATCGCACTCTTCCCCCTCCACCCCCGCCCCTACAACAGTCTCAACCTCCTCCACCTGGTACCAGTGGAGGTGAAGGGAGAAATCAGTCTGCATTTGCATTGATAGATGATTCACCTTCCAAGGAGCCTGGCCAGGTGCAGCTTCCTCCACCTCCTCCACCTAGTCAGGTGCCACCCAAGGCTGGTGCTATCCAGTCTGATGGTGCTGTGCTTTCTACTGAGAATAAGAATTCACTGTCAAGCCAGGAGATCCCAAAAATGGTTGCCGGGCATCCTCCTCCAAGGCAACAACCCCCTGTTCCAGGACCCACCTTAATCCCAAGTTTACAGCCTGATGTATTACTCCCTGGAATATCTCGTTTCCCTCCACCCCCGCCACCACCCGATATGAGACCTTCTTTGTCCGTCACAGGGCTACATGCTCAGGCACCACCTCCTGGAATGATGGTCCCCCTAATGCCAAGGCCACCATATGGTCCTCCACCTGGTCCTCCTCCAATGATGAGACCTCCACTTCCTCCTGGTCCTCCTCCAAACTTCCAGGAAGAGGATCATATAGCAACTAGGCCACCTCCTCCTCCTCCGAAACCATCATATGTTAAATCTGCTGCTTCTACTGTTGTTAAAAGGCCATTAGCTCAACACACTCCAGAACTAACAGCCATGGTTCCTGCATCTGTGCGAGTGAGAAGAGAAGCGGCAATGTCTAAAACAAAGCCAAAACCGGCAGTGTCAACCTCTAGGGCAGTCTCTGGTACATCTGGACCAACTATTGTGAAATCAGAGTCGGTGAGCTTGTCATCAGCTCCAAAAACACAGAGCATTGATGACTCATATACGGCTTTCTTAGAAGACATGAAAGCCCTTGGTGCACTTGATGGTTGA

>Glyma.05g031100.2 sequence-type=CDS polypeptide=Glyma.05g031100.2.p locus=Glyma.05g031100 ID=Glyma.05g031100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGGGAAAAGGGTGAGACCCCAGTTATGTTCAGTCATTTGGGGCCTCCTCGAAGGAGAACAACTGCAGAAGAAGAAGAGAGGGTTAAGCACCCGAAGCCTGAGGACTCTGTTTATTATCATCCTACATTAAACCCTACAGGGGCTCCACCACCAGGGAAACCTCCTATGTTTAAATCATCTATAGGACCCAGAATTCCTTTGTCTGGTGCTGCATCATCCTCGGCAACAGATTTGGAGAATGATGTATTAACTGTACCACCACCTCCCCCGCCGCCACCACTGCCTGATGGTAGCAGTGCGAGTTCAGCAGATGGTGCCGTTTTATCTGCATCTTTGCCATTGCCCCCTCCCCCTCCCATGCCTCCAAAGCCTGCTACTGCTGTGCCTACATCATTACCACCACCTCCTTTGCCTCCTCCACCTCCTGGTCCCCCACCTAAAGAACAAGTTGCAAATCGCACTCTTCCCCCTCCACCCCCGCCCCTACAACAGTCTCAACCTCCTCCACCTGGTACCAGTGGAGGTGAAGGGAGAAATCAGTCTGCATTTGCATTGATAGATGATTCACCTTCCAAGGAGCCTGGCCAGGTGCAGCTTCCTCCACCTCCTCCACCTAGTCAGGTGCCACCCAAGGCTGGTGCTATCCAGTCTGATGGTGCTGTGCTTTCTACTGAGAATAAGAATTCACTGTCAAGCCAGGAGATCCCAAAAATGGTTGCCGGGCATCCTCCTCCAAGGCAACAACCCCCTGTTCCAGGACCCACCTTAATCCCAAGTTTACAGCCTGATGTATTACTCCCTGGAATATCTCGTTTCCCTCCACCCCCGCCACCACCCGATATGAGACCTTCTTTGTCCGTCACAGGGCTACATGCTCAGGCACCACCTCCTGGAATGATGGTCCCCCTAATGCCAAGGCCACCATATGGTCCTCCACCTGGTCCTCCTCCAATGATGAGACCTCCACTTCCTCCTGGTCCTCCTCCAAACTTCCAGGAAGAGGATCATATAGCAACTAGGCCACCTCCTCCTCCTCCGAAACCATCATATGTTAAATCTGCTGCTTCTACTGTTGTTAAAAGGCCATTAGCTCAACACACTCCAGAACTAACAGCCATGGTTCCTGCATCTGTGCGAGTGAGAAGAGAAGCGGCAATGTCTAAAACAAAGCCAAAACCGGCAGTGTCAACCTCTAGGGCAGTCTCTGGTACATCTGGACCAACTATTGTGAAATCAGAGTCGGTGAGCTTGTCATCAGCTCCAAAAACACAGAGCATTGATGACTCATATACGGCTTTCTTAGAAGACATGAAAGCCCTTGGTGCACTTGATGGTTGA
Predicted protein sequences of Glyma.05g031100
>Glyma.05g031100.1.p sequence-type=predicted peptide transcript=Glyma.05g031100.1 locus=Glyma.05g031100 ID=Glyma.05g031100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKTTKGGKVMNPTDAYRKEIRKKELKRNKKERKKVREVGILKKDPDQLKKQIENLEMMKADGALDKARKHKKRQLQDTLNLVIKKRREYEDKMREKGETPVMFSHLGPPRRRTTAEEEERVKHPKPEDSVYYHPTLNPTGAPPPGKPPMFKSSIGPRIPLSGAASSSATDLENDVLTVPPPPPPPPLPDGSSASSADGAVLSASLPLPPPPPMPPKPATAVPTSLPPPPLPPPPPGPPPKEQVANRTLPPPPPPLQQSQPPPPGTSGGEGRNQSAFALIDDSPSKEPGQVQLPPPPPPSQVPPKAGAIQSDGAVLSTENKNSLSSQEIPKMVAGHPPPRQQPPVPGPTLIPSLQPDVLLPGISRFPPPPPPPDMRPSLSVTGLHAQAPPPGMMVPLMPRPPYGPPPGPPPMMRPPLPPGPPPNFQEEDHIATRPPPPPPKPSYVKSAASTVVKRPLAQHTPELTAMVPASVRVRREAAMSKTKPKPAVSTSRAVSGTSGPTIVKSESVSLSSAPKTQSIDDSYTAFLEDMKALGALDG*

>Glyma.05g031100.2.p sequence-type=predicted peptide transcript=Glyma.05g031100.2 locus=Glyma.05g031100 ID=Glyma.05g031100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MREKGETPVMFSHLGPPRRRTTAEEEERVKHPKPEDSVYYHPTLNPTGAPPPGKPPMFKSSIGPRIPLSGAASSSATDLENDVLTVPPPPPPPPLPDGSSASSADGAVLSASLPLPPPPPMPPKPATAVPTSLPPPPLPPPPPGPPPKEQVANRTLPPPPPPLQQSQPPPPGTSGGEGRNQSAFALIDDSPSKEPGQVQLPPPPPPSQVPPKAGAIQSDGAVLSTENKNSLSSQEIPKMVAGHPPPRQQPPVPGPTLIPSLQPDVLLPGISRFPPPPPPPDMRPSLSVTGLHAQAPPPGMMVPLMPRPPYGPPPGPPPMMRPPLPPGPPPNFQEEDHIATRPPPPPPKPSYVKSAASTVVKRPLAQHTPELTAMVPASVRVRREAAMSKTKPKPAVSTSRAVSGTSGPTIVKSESVSLSSAPKTQSIDDSYTAFLEDMKALGALDG*






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