SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.05g022900): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.05g022900): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.05g022900

Feature Type:gene_model
Chromosome:Gm05
Start:2008572
stop:2009867
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g022900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G31330.1AT photosystem I subunit F JGI N/AIEA
GO:0015979GO-bp photosynthesis EnsemblGenomesN/AIEA
GO:0015979GO-bp photosynthesis JGI N/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009522GO-cc photosystem I EnsemblGenomesN/AIEA
GO:0009522GO-cc photosystem I JGI N/AIEA
GO:0009534GO-cc chloroplast thylakoid EnsemblGenomesN/AIEA
GO:0009535GO-cc chloroplast thylakoid membrane EnsemblGenomesN/AIEA
GO:0009538GO-cc photosystem I reaction center EnsemblGenomesN/AIEA
GO:0009538GO-cc photosystem I reaction center JGI N/AIEA
GO:0009579GO-cc thylakoid EnsemblGenomesN/AIEA
GO:0009941GO-cc chloroplast envelope EnsemblGenomesN/AIEA
GO:0010287GO-cc plastoglobule EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0019904GO-mf protein domain specific binding EnsemblGenomesN/AIEA
PF02507PFAM Photosystem I reaction centre subunit III JGI N/AIEA
PHOTOALL-PWYSoyCyc9 oxygenic photosynthesis Plant Metabolic Network ISS
PWY-101SoyCyc9 photosynthesis light reactions Plant Metabolic Network ISS
GN7V-49984SoyCyc9-rxn photosystem I Plant Metabolic Network ISS

Expression Patterns of Glyma.05g022900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g022900 not represented in the dataset
Glyma.05g022900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.05g022900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g00620 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g022900
>Glyma.05g022900.1 sequence-type=CDS polypeptide=Glyma.05g022900.1.p locus=Glyma.05g022900 ID=Glyma.05g022900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTCTCACCATTCCCTCCAACCTCTCCAAGCCCGCCGCCCTCCGCCCCAAACTAAGCCCAAAGCTAAGGTCCGCCGCCACAACCACCATCGTCTGCAGCACCACCAACAACAACAACAACAACAACGTGTCCTCCGACCTGAAGGCGTTCTCCGCCGCGCTGGCCCTCTCCTCCATCCTCCTCTCCGCCCCTCTCCCCGCCGGCGCCGACATCTCGGGGCTCACCCCATGCAAGGAGTCGAAGCAGTTCGCGAAGCGTGAGAAGCAGTCGATAAAGAAGCTGGAGTCGTCGCTGAAGCTCTACGAGGCGGGCAGCGCCCCCGCACTGGCCATTAAGGCGAGCGTGGAGAAGACGAAGAGGAGGTTCGACAACTACGCGAAGCAGGGGTTGCTGTGCGGCGGCGATGGGTTGCCGCACCTGATCGTGAGCGGAGACCAGAGGCACTGGGGTGAGTTCATCACACCCGGAATACTATTCCTGTACATCTCGGGATGGATCGGCTGGGTGGGTCGGAGCTACCTGATTGCGATCAGGGACGAGAAGAAACCCACCATGAAGGAGATCATCATCGATGTTCCTCTGGCTTCTCGCTTGCTCTTCAGGGGTTTCAGCTGGCCCGTTGCTGCCTACAGAGAACTCATCAACGGCGACCTCATTGCCAAGGATGTCTAG
Predicted protein sequences of Glyma.05g022900
>Glyma.05g022900.1.p sequence-type=predicted peptide transcript=Glyma.05g022900.1 locus=Glyma.05g022900 ID=Glyma.05g022900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLTIPSNLSKPAALRPKLSPKLRSAATTTIVCSTTNNNNNNNVSSDLKAFSAALALSSILLSAPLPAGADISGLTPCKESKQFAKREKQSIKKLESSLKLYEAGSAPALAIKASVEKTKRRFDNYAKQGLLCGGDGLPHLIVSGDQRHWGEFITPGILFLYISGWIGWVGRSYLIAIRDEKKPTMKEIIIDVPLASRLLFRGFSWPVAAYRELINGDLIAKDV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo