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Report for Sequence Feature Glyma.05g022500

Feature Type:gene_model
Chromosome:Gm05
Start:1971247
stop:1978465
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g022500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G07920.1AT diacylglycerol kinase1 JGI N/AIEA
GO:0007165GO-bp signal transduction EnsemblGenomesN/AIEA
GO:0007205GO-bp protein kinase C-activating G-protein coupled receptor signaling pathway EnsemblGenomesN/AIEA
GO:0007205GO-bp protein kinase C-activating G-protein coupled receptor signaling pathway JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0035556GO-bp intracellular signal transduction EnsemblGenomesN/AIEA
GO:0035556GO-bp intracellular signal transduction JGI N/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003951GO-mf NAD+ kinase activity EnsemblGenomesN/AIEA
GO:0004143GO-mf diacylglycerol kinase activity EnsemblGenomesN/AIEA
GO:0004143GO-mf diacylglycerol kinase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG1169 KOG Diacylglycerol kinase JGI N/AIEA
PTHR11255Panther DIACYLGLYCEROL KINASE JGI N/AIEA
PTHR11255:SF33Panther SUBFAMILY NOT NAMED JGI N/AIEA
PF00130PFAM Phorbol esters/diacylglycerol binding domain (C1 domain) JGI N/AIEA
PF00609PFAM Diacylglycerol kinase accessory domain JGI N/AIEA
PF00781PFAM Diacylglycerol kinase catalytic domain JGI N/AIEA
PWY-7039SoyCyc9 phosphatidate metabolism, as a signaling molecule Plant Metabolic Network ISS
GN7V-67570SoyCyc9-rxn diacylglycerol kinase Plant Metabolic Network ISS

Proteins Associated with Glyma.05g022500
LocusGene SymbolProtein Name
DGK12 diacylglycerol kinase 12

Expression Patterns of Glyma.05g022500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g022500
ParalogEvidenceComments
Glyma.17g077100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g022500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g00570 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g022500
>Glyma.05g022500.2 sequence-type=transcript locus=Glyma.05g022500 ID=Glyma.05g022500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CaattcttaattattgatattttattttatttttaattGATGCTATAGCTGATTGGGAATGAGTTTCGTGTCTGTTTCGTTTCTGAGAAATTGAGGTATTCTTTATGCTTGCCGTTCATACCGTTGCTGGGGTTTGGAAGTTTGAAGTTAGCAAAAAAAGATTAATAGAAGATGCTTTTGACAAAAAATAGGGATGATGAATGCCTTTCTTGTTCAATATGTTTTTTGAGAGAAGGAGGATGAGTGTTCATGTATTAACCAGCTTGTAATTGCCCATGTATGAATTTTGATTGAAGAATGATACATATGGGGTGTGATTTCTTTATGTTGTTTATACACATGAGGTTTAGTTAGGAGGCATTTATCGTAGACTCGTAGTTAACTTGGATCGTCACAACCAAGCAAATTATACAAGCAATACAGTTGTATCTTTTTGAATCATATAGTTGAGGAATGGATGATGAAAGAGATTTTGAGTTGTTATTTTACAGTTGGAATACCAAGAATCCGACTGATCAGCTTTTCATTATATCTTTTCTTGTTGCTGCTCTTGTTGGAATGTTGACCATAGCCTACACGGCCTTTCAATGGAGGAGAAACATCAATCTAAGTTGGATGAAAGCAATAGCTAGATCTAAGAAAAACCCAAAGGCAAGGCACAAAATTCCTGCGGCCCCTCATACATGGGATTTAGAATCTGCATCTCGTGCAAAGAATTTAAACTGCTGTGTATGCTTTAAGTCCGTGTCACCCTCTCAAACTCTAGGACCTATTGTAGCTTCTGAAGGTTTCATCCACCGTTGCTGTACTTGTGGTGCAGTAGCTCATCTGAGCTGTTCCTCTAGTGCACACAAGGACTGCAAGTGTGTTTCTATGATTGGATATGAGCATGTCACACACCAATGGACTGTTTGTTGGACAGATGTAGCTGACCAACCTGACGAAACTGCTCTCTGTAGTTACTGTGAAGAGCTATGTGGTGGGACGTTCCTCAGTGGTTCCCCTATATGGTCTTGTTTGTGGTGCCAACGTTTAGTACATGTTGATTGTCATAGTACAATGTCTAATGAAACAGGTGATATTTGCGATTTGGGCCAATTTAGAAGATTGATACTATCACCACTGTATGTGAAGGAATTGAACTGGAACTTGCCAGGTGGATTTTTGAGCTCAATTACTCATGGGGCAAATGAAATAGCATCATCAGTTCGGGCAAGTATTAGGAACCAGAGCAAAAAGTACAAGCATGGAAATGAACTATCTGTTGAATCTGGGAATAGTGAGAGCATTGGTGAAGTGTCCACAGAAAGCACTGGTGATTCTCATCAAATACAGAATGGTCATCATGAAGTGGGTGAAAAAAGTAGCTCGAATAAGGGGGTTCAACATCAAGATAATGAAGTAGATAATAAATTGGATAGGAAACCCAGTCTTAGACGGAATTCATCAATCAACCAGAAGGATGAATCCCACTCATTAGGAGTGAAGCAGAAATATGATTTGATTGATTTGCCTCTGGATGCAAGACCATTGTTAGTTTTTATAAACAAGAAGAGTGGTGCCCAGCGTGGAGACTCACTTAGAATGCGTCTGAATATCCTTTTAAATCCTGTTCAGGTGTTTGAATTGAGCTCAACACAGGGGCCAGAGATGGGACTTTATTTGTTTAGAAAGGTGTCTCACTTCAGAGTTCTTGTATGTGGGGGAGATGGTACTGTTGGTTGGGTTCTGAATGCAATAGACAAGCAAAATTTTGTTTCCCCTCCCCCAGTTGCTATTCTTCCTGCTGGTACAGGAAATGATCTCGCTAGAGTTCTCTCCTGGGGAGGTGGCTTGGGTCCAGTGGAGAGGCAAGGGGGTCTTACTACATTTTTGCATCACATAGAACATGCTGCTGTTACAGTTCTTGACCGTTGGAAGGTAACAATTAGTAATCCACAAGGAAAACAACAGCTGCTACCAACAAAGTTTATGAACAATTATCTTGGAATTGGTTGTGATGCAAAGGTTGCTTTGGACATTCATAATCTGCGTGAAGAGAATCCAGATAAGTTTTATAACCAGTTTATGAATAAAGTTCTATATGCAAGAGAAGGTGCTAAAAGTATTATGGATAGGACATTTGCAGATTTACCTTGGCAGATTCGAGTTGAGGTTGATGGAGTTGAAATTGAGGTCCCTGAGGATGCGGAAGGTGTGCTTGTTGCAAATATTGGAAGCTACATGGGAGGTGTAGATTTGTGGCAAAATGAGGATGAAAATTATGATAATTTTGATCAACAATCCATGCATGATAAGATACTTGAAGTTGTGAGCATATCTGGAACATGGCACCTCGGGAAACTTCAGGTCGGGCTTTCTCGAGCTCGAAGACTTGCACAAGGACAGTCAATTAAGATACAATTGTTTGCCATGTTTCCTGTTCAAATTGATGGAGAGCCTTGGTTTCAGCAACCCTGCACAATTAACATAACCCATCATGGCCAGGCTTTCATGTTGAAGAGGGTGGCTGAGGAACCCCTTGGCCCTGCATCTGCAATAATTGCTGAAGTGCTTGAGAATGCTGAAACACATAATGTAATTAATGCTTCACAAAAGCGAGCTCTTCTTCATGAAATGGCACTGAGGCTGTCCTAGAATTCTCTCCACCCTGCGAATGTGATTAAAGATTTTGTATTTCTTTTGAAATATATTTTGCACACTTTGTGTATTACTTTTCCTTTTTGAATCTTTTGTCCAAACTTCCTGCTACTTCTGAAGCAGGCTTGTGTATTACGAATCTTTACATGAAAAGAAAGAATGAAATCAGCAATATACAGTTATATGTACCAAATATCAAGCCCCAATGCAGCAAGTTGCTTACGTTTGGCATGTC
Coding sequences of Glyma.05g022500
>Glyma.05g022500.1 sequence-type=CDS polypeptide=Glyma.05g022500.1.p locus=Glyma.05g022500 ID=Glyma.05g022500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGATGAAAGAGATTTTGAGTTGTTATTTTACAGTTGGAATACCAAGAATCCGACTGATCAGCTTTTCATTATATCTTTTCTTGTTGCTGCTCTTGTTGGAATGTTGACCATAGCCTACACGGCCTTTCAATGGAGGAGAAACATCAATCTAAGTTGGATGAAAGCAATAGCTAGATCTAAGAAAAACCCAAAGGCAAGGCACAAAATTCCTGCGGCCCCTCATACATGGGATTTAGAATCTGCATCTCGTGCAAAGAATTTAAACTGCTGTGTATGCTTTAAGTCCGTGTCACCCTCTCAAACTCTAGGACCTATTGTAGCTTCTGAAGGTTTCATCCACCGTTGCTGTACTTGTGGTGCAGTAGCTCATCTGAGCTGTTCCTCTAGTGCACACAAGGACTGCAAGTGTGTTTCTATGATTGGATATGAGCATGTCACACACCAATGGACTGTTTGTTGGACAGATGTAGCTGACCAACCTGACGAAACTGCTCTCTGTAGTTACTGTGAAGAGCTATGTGGTGGGACGTTCCTCAGTGGTTCCCCTATATGGTCTTGTTTGTGGTGCCAACGTTTAGTACATGTTGATTGTCATAGTACAATGTCTAATGAAACAGGTGATATTTGCGATTTGGGCCAATTTAGAAGATTGATACTATCACCACTGTATGTGAAGGAATTGAACTGGAACTTGCCAGGTGGATTTTTGAGCTCAATTACTCATGGGGCAAATGAAATAGCATCATCAGTTCGGGCAAGTATTAGGAACCAGAGCAAAAAGTACAAGCATGGAAATGAACTATCTGTTGAATCTGGGAATAGTGAGAGCATTGGTGAAGTGTCCACAGAAAGCACTGGTGATTCTCATCAAATACAGAATGGTCATCATGAAGTGGGTGAAAAAAGTAGCTCGAATAAGGGGGTTCAACATCAAGATAATGAAGTAGATAATAAATTGGATAGGAAACCCAGTCTTAGACGGAATTCATCAATCAACCAGAAGGATGAATCCCACTCATTAGGAGTGAAGCAGAAATATGATTTGATTGATTTGCCTCTGGATGCAAGACCATTGTTAGTTTTTATAAACAAGAAGAGTGGTGCCCAGCGTGGAGACTCACTTAGAATGCGTCTGAATATCCTTTTAAATCCTGTTCAGGTGTTTGAATTGAGCTCAACACAGGGGCCAGAGATGGGACTTTATTTGTTTAGAAAGGTGTCTCACTTCAGAGTTCTTGTATGTGGGGGAGATGGTACTGTTGGTTGGGTTCTGAATGCAATAGACAAGCAAAATTTTGTTTCCCCTCCCCCAGTTGCTATTCTTCCTGCTGGTACAGGAAATGATCTCGCTAGAGTTCTCTCCTGGGGAGGTGGCTTGGGTCCAGTGGAGAGGCAAGGGGGTCTTACTACATTTTTGCATCACATAGAACATGCTGCTGTTACAGTTCTTGACCGTTGGAAGGTAACAATTAGTAATCCACAAGGAAAACAACAGCTGCTACCAACAAAGTTTATGAACAATTATCTTGGAATTGGTTGTGATGCAAAGGTTGCTTTGGACATTCATAATCTGCGTGAAGAGAATCCAGATAAGTTTTATAACCAGTTTATGAATAAAGTTCTATATGCAAGAGAAGGTGCTAAAAGTATTATGGATAGGACATTTGCAGATTTACCTTGGCAGATTCGAGTTGAGGTTGATGGAGTTGAAATTGAGGTCCCTGAGGATGCGGAAGGTGTGCTTGTTGCAAATATTGGAAGCTACATGGGAGGTGTAGATTTGTGGCAAAATGAGGATGAAAATTATGATAATTTTGATCAACAATCCATGCATGATAAGATACTTGAAGTTGTGAGCATATCTGGAACATGGCACCTCGGGAAACTTCAGGTCGGGCTTTCTCGAGCTCGAAGACTTGCACAAGGACAGTCAATTAAGATACAATTGTTTGCCATGTTTCCTGTTCAAATTGATGGAGAGCCTTGGTTTCAGCAACCCTGCACAATTAACATAACCCATCATGGCCAGGCTTTCATGTTGAAGAGGGTGGCTGAGGAACCCCTTGGCCCTGCATCTGCAATAATTGCTGAAGTGCTTGAGAATGCTGAAACACATAATGTAATTAATGCTTCACAAAAGCGAGCTCTTCTTCATGAAATGGCACTGAGGCTGTCCTAG

>Glyma.05g022500.2 sequence-type=CDS polypeptide=Glyma.05g022500.2.p locus=Glyma.05g022500 ID=Glyma.05g022500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGATGAAAGAGATTTTGAGTTGTTATTTTACAGTTGGAATACCAAGAATCCGACTGATCAGCTTTTCATTATATCTTTTCTTGTTGCTGCTCTTGTTGGAATGTTGACCATAGCCTACACGGCCTTTCAATGGAGGAGAAACATCAATCTAAGTTGGATGAAAGCAATAGCTAGATCTAAGAAAAACCCAAAGGCAAGGCACAAAATTCCTGCGGCCCCTCATACATGGGATTTAGAATCTGCATCTCGTGCAAAGAATTTAAACTGCTGTGTATGCTTTAAGTCCGTGTCACCCTCTCAAACTCTAGGACCTATTGTAGCTTCTGAAGGTTTCATCCACCGTTGCTGTACTTGTGGTGCAGTAGCTCATCTGAGCTGTTCCTCTAGTGCACACAAGGACTGCAAGTGTGTTTCTATGATTGGATATGAGCATGTCACACACCAATGGACTGTTTGTTGGACAGATGTAGCTGACCAACCTGACGAAACTGCTCTCTGTAGTTACTGTGAAGAGCTATGTGGTGGGACGTTCCTCAGTGGTTCCCCTATATGGTCTTGTTTGTGGTGCCAACGTTTAGTACATGTTGATTGTCATAGTACAATGTCTAATGAAACAGGTGATATTTGCGATTTGGGCCAATTTAGAAGATTGATACTATCACCACTGTATGTGAAGGAATTGAACTGGAACTTGCCAGGTGGATTTTTGAGCTCAATTACTCATGGGGCAAATGAAATAGCATCATCAGTTCGGGCAAGTATTAGGAACCAGAGCAAAAAGTACAAGCATGGAAATGAACTATCTGTTGAATCTGGGAATAGTGAGAGCATTGGTGAAGTGTCCACAGAAAGCACTGGTGATTCTCATCAAATACAGAATGGTCATCATGAAGTGGGTGAAAAAAGTAGCTCGAATAAGGGGGTTCAACATCAAGATAATGAAGTAGATAATAAATTGGATAGGAAACCCAGTCTTAGACGGAATTCATCAATCAACCAGAAGGATGAATCCCACTCATTAGGAGTGAAGCAGAAATATGATTTGATTGATTTGCCTCTGGATGCAAGACCATTGTTAGTTTTTATAAACAAGAAGAGTGGTGCCCAGCGTGGAGACTCACTTAGAATGCGTCTGAATATCCTTTTAAATCCTGTTCAGGTGTTTGAATTGAGCTCAACACAGGGGCCAGAGATGGGACTTTATTTGTTTAGAAAGGTGTCTCACTTCAGAGTTCTTGTATGTGGGGGAGATGGTACTGTTGGTTGGGTTCTGAATGCAATAGACAAGCAAAATTTTGTTTCCCCTCCCCCAGTTGCTATTCTTCCTGCTGGTACAGGAAATGATCTCGCTAGAGTTCTCTCCTGGGGAGGTGGCTTGGGTCCAGTGGAGAGGCAAGGGGGTCTTACTACATTTTTGCATCACATAGAACATGCTGCTGTTACAGTTCTTGACCGTTGGAAGGTAACAATTAGTAATCCACAAGGAAAACAACAGCTGCTACCAACAAAGTTTATGAACAATTATCTTGGAATTGGTTGTGATGCAAAGGTTGCTTTGGACATTCATAATCTGCGTGAAGAGAATCCAGATAAGTTTTATAACCAGTTTATGAATAAAGTTCTATATGCAAGAGAAGGTGCTAAAAGTATTATGGATAGGACATTTGCAGATTTACCTTGGCAGATTCGAGTTGAGGTTGATGGAGTTGAAATTGAGGTCCCTGAGGATGCGGAAGGTGTGCTTGTTGCAAATATTGGAAGCTACATGGGAGGTGTAGATTTGTGGCAAAATGAGGATGAAAATTATGATAATTTTGATCAACAATCCATGCATGATAAGATACTTGAAGTTGTGAGCATATCTGGAACATGGCACCTCGGGAAACTTCAGGTCGGGCTTTCTCGAGCTCGAAGACTTGCACAAGGACAGTCAATTAAGATACAATTGTTTGCCATGTTTCCTGTTCAAATTGATGGAGAGCCTTGGTTTCAGCAACCCTGCACAATTAACATAACCCATCATGGCCAGGCTTTCATGTTGAAGAGGGTGGCTGAGGAACCCCTTGGCCCTGCATCTGCAATAATTGCTGAAGTGCTTGAGAATGCTGAAACACATAATGTAATTAATGCTTCACAAAAGCGAGCTCTTCTTCATGAAATGGCACTGAGGCTGTCCTAG
Predicted protein sequences of Glyma.05g022500
>Glyma.05g022500.1.p sequence-type=predicted peptide transcript=Glyma.05g022500.1 locus=Glyma.05g022500 ID=Glyma.05g022500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDDERDFELLFYSWNTKNPTDQLFIISFLVAALVGMLTIAYTAFQWRRNINLSWMKAIARSKKNPKARHKIPAAPHTWDLESASRAKNLNCCVCFKSVSPSQTLGPIVASEGFIHRCCTCGAVAHLSCSSSAHKDCKCVSMIGYEHVTHQWTVCWTDVADQPDETALCSYCEELCGGTFLSGSPIWSCLWCQRLVHVDCHSTMSNETGDICDLGQFRRLILSPLYVKELNWNLPGGFLSSITHGANEIASSVRASIRNQSKKYKHGNELSVESGNSESIGEVSTESTGDSHQIQNGHHEVGEKSSSNKGVQHQDNEVDNKLDRKPSLRRNSSINQKDESHSLGVKQKYDLIDLPLDARPLLVFINKKSGAQRGDSLRMRLNILLNPVQVFELSSTQGPEMGLYLFRKVSHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLSWGGGLGPVERQGGLTTFLHHIEHAAVTVLDRWKVTISNPQGKQQLLPTKFMNNYLGIGCDAKVALDIHNLREENPDKFYNQFMNKVLYAREGAKSIMDRTFADLPWQIRVEVDGVEIEVPEDAEGVLVANIGSYMGGVDLWQNEDENYDNFDQQSMHDKILEVVSISGTWHLGKLQVGLSRARRLAQGQSIKIQLFAMFPVQIDGEPWFQQPCTINITHHGQAFMLKRVAEEPLGPASAIIAEVLENAETHNVINASQKRALLHEMALRLS*

>Glyma.05g022500.2.p sequence-type=predicted peptide transcript=Glyma.05g022500.2 locus=Glyma.05g022500 ID=Glyma.05g022500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDDERDFELLFYSWNTKNPTDQLFIISFLVAALVGMLTIAYTAFQWRRNINLSWMKAIARSKKNPKARHKIPAAPHTWDLESASRAKNLNCCVCFKSVSPSQTLGPIVASEGFIHRCCTCGAVAHLSCSSSAHKDCKCVSMIGYEHVTHQWTVCWTDVADQPDETALCSYCEELCGGTFLSGSPIWSCLWCQRLVHVDCHSTMSNETGDICDLGQFRRLILSPLYVKELNWNLPGGFLSSITHGANEIASSVRASIRNQSKKYKHGNELSVESGNSESIGEVSTESTGDSHQIQNGHHEVGEKSSSNKGVQHQDNEVDNKLDRKPSLRRNSSINQKDESHSLGVKQKYDLIDLPLDARPLLVFINKKSGAQRGDSLRMRLNILLNPVQVFELSSTQGPEMGLYLFRKVSHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLSWGGGLGPVERQGGLTTFLHHIEHAAVTVLDRWKVTISNPQGKQQLLPTKFMNNYLGIGCDAKVALDIHNLREENPDKFYNQFMNKVLYAREGAKSIMDRTFADLPWQIRVEVDGVEIEVPEDAEGVLVANIGSYMGGVDLWQNEDENYDNFDQQSMHDKILEVVSISGTWHLGKLQVGLSRARRLAQGQSIKIQLFAMFPVQIDGEPWFQQPCTINITHHGQAFMLKRVAEEPLGPASAIIAEVLENAETHNVINASQKRALLHEMALRLS*






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