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Report for Sequence Feature Glyma.05g021900

Feature Type:gene_model
Chromosome:Gm05
Start:1917507
stop:1920054
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g021900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G07990.1AT Cytochrome P450 superfamily protein JGI N/AIEA
GO:0044550GO-bp secondary metabolite biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0004497GO-mf monooxygenase activity EnsemblGenomesN/AIEA
GO:0005506GO-mf iron ion binding EnsemblGenomesN/AIEA
GO:0005506GO-mf iron ion binding JGI N/AIEA
GO:0009055GO-mf electron carrier activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016705GO-mf oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen EnsemblGenomesN/AIEA
GO:0016705GO-mf oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen JGI N/AIEA
GO:0016709GO-mf oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG0156 KOG Cytochrome P450 CYP2 subfamily JGI N/AIEA
PTHR24298Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24298:SF44Panther JGI N/AIEA
PF00067PFAM Cytochrome P450 JGI N/AIEA
PWY-3101SoyCyc9 flavonol biosynthesis Plant Metabolic Network ISS
PWY-5060SoyCyc9 luteolin biosynthesis Plant Metabolic Network ISS
PWY-7495SoyCyc9 gossypetin metabolism Plant Metabolic Network ISS
GN7V-61977SoyCyc9-rxn flavonoid 3'-monooxygenase Plant Metabolic Network ISS

Expression Patterns of Glyma.05g021900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g021900
ParalogEvidenceComments
Glyma.17g077700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g021900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g00510 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g021900
>Glyma.05g021900.1 sequence-type=CDS polypeptide=Glyma.05g021900.1.p locus=Glyma.05g021900 ID=Glyma.05g021900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTGCTTGGGTTATAGCCTTTGCTACTGTTGTAGCAGCGACCCTTATTTACAGGCTTTTCAAGCTCATAACTGTGCCTTCATTACCACTGCCGCCAGGTCCTAGGCCATGGCCCATCGTGGGAAACTTGCCCCACATGGGCCCTGCGCCACACCAGGGTCTGGCAGCCTTGGCTCAGACTCATGGGCCGCTCATGCACCTCCGGTTGGGCTTCGTGGACGTGGTGGTCGCGTCTTCAGCCTCCGTTGCGGAGCAGTTCTTGAAGATCCACGACGCCAATTTCTGCAGCCGGCCATGTAACTCCAGAACCACATACTTGACCTATAACCAACAAGACCTCGTTTTTGCTCCCTATGGCCCACGGTGGCGGTTCCTTCGGAAACTAAGTACCGTTCACATGTTCTCTGCCAAGGCCATGGATGATTTTAGAGAACTGCGACAGGAAGAGGTAGAAAGATTGACATGCAATTTAGCAAGATCGAGTTCTAAAGTGGTGAATTTAAGACAATTATTGAACGTATGTACCACTAATATATTGGCGAGGATAATGATAGGACGGCGGATTTTCAGCGACAATAGTAGTAATTGTGATCCTAGGGCAGATGAGTTTAAATCTATGGTGGTGGACCTTATGGTATTGGCTGGAGTTTTCAATATCGGTGACTTCATTCCTTGCTTAGACTGGCTAGACCTTCAAGGAGTGAAACCTAAGACGAAGAAATTGTATGAGAGGTTTGATAAATTTTTAACCTCCATTCTTGAAGAACACAAGATTTCTAAGAATGAAAAACATCAAGACTTGTTAAGTGTATTTTTGTCACTTAAAGAGACTCCTCAAGGAGAACATCAACTTATTGAATCGGAGATCAAAGCAGTACTTGGGGATATGTTTACAGCTGGGACAGATACATCATCAAGCACAGTAGAGTGGGCAATTACAGAACTTATAAAGAACCCAAGAATTATGATCCAAGTCCAACAAGAATTGAATGTTGTTGTGGGTCAGGATAGGCTTGTGACTGAACTAGATTTACCCCACCTCCCTTACTTGCAAGCTGTGGTGAAGGAAACTTTACGTCTCCACCCACCAACCCCTCTTTCCCTCCCACGATTTGCTGAAAATAGTTGTGAGATATTCAATTATCACATCCCTAAAGGTGCAACTCTCTTGGTTAATGTTTGGGCCATAGGACGTGATCCTAAGGAATGGATTGACCCATTGGAATTCAAGCCTGAAAGGTTCTTTCCCGGTGGTGAGAAGGATGATGTTGATGTCAAAGGCAATAACTTCGAGCTTATACCTTTTGGTGCTGGACGTAGAATATGTGTTGGTATGAGCTTAGGCCTAAAGGTTGTTCAACTGCTCATTGCTACCTTAGCCCACTCATTTGATTGGGAATTGGAGAATGGGGCTGACCCAAAAAGGCTCAACATGGATGAAACATATGGGATTACCCTCCAAAAGGCACTGCCTCTTTTTGTCCACCCTCATCCTAGGCTTTCACAACATGTGTATTCATCATCATCATCTTTGTGA
Predicted protein sequences of Glyma.05g021900
>Glyma.05g021900.1.p sequence-type=predicted peptide transcript=Glyma.05g021900.1 locus=Glyma.05g021900 ID=Glyma.05g021900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSAWVIAFATVVAATLIYRLFKLITVPSLPLPPGPRPWPIVGNLPHMGPAPHQGLAALAQTHGPLMHLRLGFVDVVVASSASVAEQFLKIHDANFCSRPCNSRTTYLTYNQQDLVFAPYGPRWRFLRKLSTVHMFSAKAMDDFRELRQEEVERLTCNLARSSSKVVNLRQLLNVCTTNILARIMIGRRIFSDNSSNCDPRADEFKSMVVDLMVLAGVFNIGDFIPCLDWLDLQGVKPKTKKLYERFDKFLTSILEEHKISKNEKHQDLLSVFLSLKETPQGEHQLIESEIKAVLGDMFTAGTDTSSSTVEWAITELIKNPRIMIQVQQELNVVVGQDRLVTELDLPHLPYLQAVVKETLRLHPPTPLSLPRFAENSCEIFNYHIPKGATLLVNVWAIGRDPKEWIDPLEFKPERFFPGGEKDDVDVKGNNFELIPFGAGRRICVGMSLGLKVVQLLIATLAHSFDWELENGADPKRLNMDETYGITLQKALPLFVHPHPRLSQHVYSSSSSL*






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