SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.05g020600

Feature Type:gene_model
Chromosome:Gm05
Start:1841474
stop:1844871
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.05g020600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G08020.1AT ATRPA70B,RPA70B JGI N/AIEA
GO:0006260GO-bp DNA replication JGI N/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
K07466KEGG DNA repair and recombination proteins JGI N/AIEA
KOG0851 KOG Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins JGI N/AIEA
PTHR23273PantherFam REPLICATION FACTOR A 1, RFA1 JGI N/AIEA
PTHR23273:SF4PantherFam REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT JGI N/AIEA
PF01336Pfam OB-fold nucleic acid binding domain JGI N/AIEA
PF04057Pfam Replication factor-A protein 1, N-terminal domain JGI N/AIEA
PF08646Pfam Replication factor-A C terminal domain JGI N/AIEA
PF16900Pfam Replication protein A OB domain JGI N/AIEA

Gene model name correspondences to Glyma.05g020600 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g00370 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g020600
>Glyma.05g020600.4 sequence-type=CDS polypeptide=Glyma.05g020600.4.p locus=Glyma.05g020600 id=Glyma.05g020600.4.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGCCGCCAAAACGGTAACCCCCGACGCCGTTTCGACGCTCCTCGCAAACCCTTCCCCCGATTCCACATCGGATCTCCCCGACATCGTCGTTCAAGTCCTCGATCTTAAGGCGACAGGCAATAAATACATGTTTACTGCTAATGATGGAAAAACGAAACTGAAAGCTATGATTCCTTCGGATATGCGCTCTCAGGTGCTCTCCGGGGCTATTCAAAACCTAGGTCTTATTCGCGTCCTTGATTACACTGTCAACGATATCCCCAATAAATCGGACAAATACCTTCTTGCCATTAAATGTGAAGCTGTATCTCCCGCGCTTGAAATGGAGATAAAGAGTGAGGAATCTGGATCTGGGATTCTTTTGAAGCCCAAAGTAGAGGGTGGAGTCAAGACTGAAGGTGCTGCTGCTGGGATTCTTCTCAAGCCCAAGCAAGAAGTGGTGACAAAATCTGCTAACCAGATTCTACGCGAACAGCATGGAAATTCGGCTCCTGCTGCACGCATGGCAATGACGCGTAGAGTGCGTCCTCTTGTTTCGTTGAACCCTTATCAGGGTAATTGGACAATAAAGGTTAGCGTTACGAGCAAAGGGAACATGCGTACCTATAAGAATGCTAGGGGTGATGGTTGCGTCTTCAATGTTGAATTGACGGATGAAGATGGTACTCAGATTCAGGCAACTATGTTTAATAATGCTGCAAGGAAATTTTTTGACAAATTTGTTCTGGGAAAGGTTTACTACATTTCAAGGGGAACTTTGAAAGTTGCTAACAAGCAGTTCAAAACTGTGCAAAATGATTATGAAATGACGCTAAATGAGAATTCCGAGGTGGAAGAGGTGGTCGGTGAAGCAAGTTTTGTTCCGGAAACAAAATTCAACTTTGTGCAGATTGATCAACTGGGTCCTCATGTCAATAAGTCTGAGCTTGTGGATGTTATTGGAGTTGTTAAGAATGTGTCTTCAACAATGAGCATTCGTAGGAAGAGTGACAATGAGAGTATTCCAAAGCGTGACATTACTATTGCTGATGACACGAAGAAGACAGTAGTTGTGTCCTTGTGGAATGAACTTGCAACTACCACAGGAGAAGAGCTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATTAAATCTCTCAAGGTTGGGGACTTCCAAGGTGTTTCTTTGTCAACTATAGGCAGAAGTGTGGTTCTGGTAAATCCAGACATACCCGAAGCAAAAAATCTCAGAAGCTGGTATGATTTTGAAGGCAAGGATGCTGCAATGGACTCTGTAGGCTCTGGTTCAAGTCCAATATCTAACAATGGGATTAGATCAGTGTACACTGATCGTATTCATCTTTCTGACATAATCTCAAACCCATCATTGGGAGATGGAAAGCCTGCTTTTTTCAGTCTTAGAGGACATATAACCTTCATAAAGCCTGATCAGGCAATGTGGTATCGTGCCTGTAAGACATGCAATAAGAAAGTTACTGAAAGCTTTGGTTCTGGATATTGGTGTGATGGATGTCAGAAAAGTGATGAACAGTGTAGTTTAAGGTATATTATGGTTGCCAAGGTTTCTGATGGAAGCGCTGAGACTTTTATCTCTGTCTTCAATCAGGAAGCTGAGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCTCAACATCTTTTCCGGGTTAGTGTTACTCCGAACGAGTATAATGGCGAGAAGCGGCAAAGGATAACAGTTCGAGCAGTTGTTCCTGTTGACTTCGCTGCTGAGTCAAGGTTTATACTGGAAGAATTATCGAAGATGAGAGCATAA
Predicted protein sequences of Glyma.05g020600
>Glyma.05g020600.4.p sequence-type=predicted peptide transcript=Glyma.05g020600.4 locus=Glyma.05g020600 id=Glyma.05g020600.4.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MAAKTVTPDAVSTLLANPSPDSTSDLPDIVVQVLDLKATGNKYMFTANDGKTKLKAMIPSDMRSQVLSGAIQNLGLIRVLDYTVNDIPNKSDKYLLAIKCEAVSPALEMEIKSEESGSGILLKPKVEGGVKTEGAAAGILLKPKQEVVTKSANQILREQHGNSAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRTYKNARGDGCVFNVELTDEDGTQIQATMFNNAARKFFDKFVLGKVYYISRGTLKVANKQFKTVQNDYEMTLNENSEVEEVVGEASFVPETKFNFVQIDQLGPHVNKSELVDVIGVVKNVSSTMSIRRKSDNESIPKRDITIADDTKKTVVVSLWNELATTTGEELLDIVDKSPVVAIKSLKVGDFQGVSLSTIGRSVVLVNPDIPEAKNLRSWYDFEGKDAAMDSVGSGSSPISNNGIRSVYTDRIHLSDIISNPSLGDGKPAFFSLRGHITFIKPDQAMWYRACKTCNKKVTESFGSGYWCDGCQKSDEQCSLRYIMVAKVSDGSAETFISVFNQEAEKIVGCSADDLDNLKLQEGEDNPYQMTLKEATWAQHLFRVSVTPNEYNGEKRQRITVRAVVPVDFAAESRFILEELSKMRA*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo