SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G74210.1 | AT | PLC-like phosphodiesterases superfamily protein | JGI | N/A | IEA |
| GO:0006071 | GO-bp | glycerol metabolic process | JGI | N/A | IEA |
| GO:0006629 | GO-bp | lipid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008081 | GO-mf | phosphoric diester hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0008889 | GO-mf | glycerophosphodiester phosphodiesterase activity | JGI | N/A | IEA |
| KOG2258 | KOG | Glycerophosphoryl diester phosphodiesterase | JGI | N/A | IEA |
| PTHR23344 | Panther | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE | JGI | N/A | IEA |
| PF03009 | PFAM | Glycerophosphoryl diester phosphodiesterase family | JGI | N/A | IEA |
| PWY-6952 | SoyCyc9 | glycerophosphodiester degradation | Plant Metabolic Network | ISS | |
| GN7V-61914 | SoyCyc9-rxn | glycerophosphodiester phosphodiesterase | Plant Metabolic Network | ISS |
|
Glyma.05g020500 not represented in the dataset |
Glyma.05g020500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.17g078900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma05g00360 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.05g020500.1 sequence-type=CDS polypeptide=Glyma.05g020500.1.p locus=Glyma.05g020500 ID=Glyma.05g020500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTCCTTACCCAGTTTTACTCCTTTTGTATTTCTATTGCTTGTCATTGGATGCAATGCAAGGCCTTTGTATCCACTTCCCAGCAAAGGTGATGATGGAAATAGGAAGCCCCTACAAACTTTTCGCCCTTATAACATTGCTCATCGCGGTTCAAACGGAGAGCTTCCTGAGGAAACTCATCCTGCATACTTGAGAGCTATTGAGGAGGGTGCAGACTTCATTGAAACTGATATCTTATCATCCAAAGATGGTGTTCTTGTATGTTTCCATGATGTTACCCTTGATAATACTACTGACATTGCAAATCGCACAGAGTTTGCTAATCGTAAAAGAACATATGAAGTCCAAGGGGAAAACATGACTGGCTTTTTTACTGTTGATTTCACATTAAAGGAATTAAAGTCATTGAGGGTGAAACAGAGGTGTAGCTTCAGGGACCAACAGTTTAATGGAAAGTTTCAAATCATCACTTTTGAAGAGTTCATTACCATAGCACTGGATGCACCCAGAGTTGTTGGAATATATCCAGAGATAAAAAATCCAGTATTTATCAATCAACATGTTAAATGGTCCCATGGCAAAAGATTTGAGGACAAGTTTGTGGAGACACTTCAGAAATATGGGTACAAGGGTTCCTACCTGTCAAAAGATTGGTTGAGACAACCTGTATTTATTCAGTCATTTGCTCCAACTTCACTCGTGTATATATCAAATAAAACGGACTTGCCCAAGGTTTTCTTAATTGATGATGTTACTGTTCCAACTCAAGACACTAATCAGTCATATTGGGAGATTACATCTGATGAATACCTAGAGTACATAAAGCAATATGTTGTGGGAATTGGACCTTGGAAGGACACAGTGGTACCTGTGGTAAAAAATTATATGACAAATCCTACTAATCTTGTTGCCAGGGCACATGCTCATAACCTGCAGGTGCATCCATATACTTACCGAAATGAGTTCCCATTTTTGCATTTCAACTTCAGTCAAGATCCGTATATGGAATATGATTTCTGGATCAACAAGATAGGCGTTGATGGTCTCTTTACAGACTTCACTGGTAGTCTTCATCGTTATCAGGAATGGACCTCTAACCGTAAAGATGATGATGATGACAAGACTGAATCCAATCTATTACATAAAATTGCTTTGTTAGTCTCCTCTTATGAATGA
>Glyma.05g020500.1.p sequence-type=predicted peptide transcript=Glyma.05g020500.1 locus=Glyma.05g020500 ID=Glyma.05g020500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASLPSFTPFVFLLLVIGCNARPLYPLPSKGDDGNRKPLQTFRPYNIAHRGSNGELPEETHPAYLRAIEEGADFIETDILSSKDGVLVCFHDVTLDNTTDIANRTEFANRKRTYEVQGENMTGFFTVDFTLKELKSLRVKQRCSFRDQQFNGKFQIITFEEFITIALDAPRVVGIYPEIKNPVFINQHVKWSHGKRFEDKFVETLQKYGYKGSYLSKDWLRQPVFIQSFAPTSLVYISNKTDLPKVFLIDDVTVPTQDTNQSYWEITSDEYLEYIKQYVVGIGPWKDTVVPVVKNYMTNPTNLVARAHAHNLQVHPYTYRNEFPFLHFNFSQDPYMEYDFWINKIGVDGLFTDFTGSLHRYQEWTSNRKDDDDDKTESNLLHKIALLVSSYE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
