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Report for Sequence Feature Glyma.05g019400

Feature Type:gene_model
Chromosome:Gm05
Start:1723859
stop:1730486
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g019400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G39040.1AT transporter associated with antigen processing protein 2 JGI N/AIEA
GO:0006810GO-bp transport JGI N/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016887GO-mf ATPase activity EnsemblGenomesN/AIEA
GO:0016887GO-mf ATPase activity JGI N/AIEA
GO:0042626GO-mf ATPase activity, coupled to transmembrane movement of substances EnsemblGenomesN/AIEA
GO:0042626GO-mf ATPase activity, coupled to transmembrane movement of substances JGI N/AIEA
KOG0058 KOG Peptide exporter, ABC superfamily JGI N/AIEA
PTHR24221Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24221:SF123Panther MULTIDRUG RESISTANCE-LIKE ATP-BINDING PROTEIN MDLA JGI N/AIEA
PF00005PFAM ABC transporter JGI N/AIEA
PF00664PFAM ABC transporter transmembrane region JGI N/AIEA

Expression Patterns of Glyma.05g019400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g019400
ParalogEvidenceComments
Glyma.17g080400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g019400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g00240 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g019400
>Glyma.05g019400.2 sequence-type=transcript locus=Glyma.05g019400 ID=Glyma.05g019400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCTAAACCTCATATTTTATTGCCCCAATTATCCAGTTTTCTTCTTAATTTCCTCTCGACCCTTGGGCAATCACGGCGTTGGAATTGGCGTGTTGCGGAGCAGTAGTGTACAGTATTGTATTTAGAGAGAGTGGGGAGTGTGAGAGTCATTCATTTCGTTTCAGAATGAACGGCTTAAGAAGTCAAAGAGCCCCTCTCTTGGAGGCTGAGGGTGCTGGAAGAGGAAAGAGGGATGGTGCCGCGGAAGGTCAAGTCTCAGACCTTGAACATGGTGATGCAGTGCCGGCGGAAAATGTGGGATTCTGTCGAGTGCTTTCACTTGCAAAACCTGAGGCTGGAAAATTAATGATTGGTACAGTGGCTCTGTTGATTGCAGCCACATCAAGTATATTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCAAGGGAAATGCAAACTCCAGAGGAGAAAGATGAAGCTTTGAATGCTGTTAAGAACACCATACTAGAAATTTTTCTGATCGTTGTCTTTGGTTCAATTTGCACTGCACTTCGAGCTTGGCTTTTTTATACTGCTAGTGAAAGGGTTGTTGCACGGCTGAGAAAGAATTTGTTCAGTCACCTTGTAAACCAGGAGATAGCTTTCTTTGATGTTACTCGAACCGGGGAACTTTTAAGTAGGCTATCTGAAGATACTCAGATCATAAAGAATGCTGCAACTACCAATCTTTCTGAGGCCCTGAGAAACTTTTCAACTGCATTAATTGGTCTAAGCTTCATGTTTGCAACATCATGGAAGTTAACATTGTTGGCTTTGGCTGTTGTACCTGTTCTTTCTGTTGCTGTTCGCAAGTTTGGCCGTTACCTGCGTGAACTTTCTCATAAAACTCAAGCTGCAGCTGCAGTAGCTTCATCAATAGCTGAGGAGTCCTTTGGTGCAATAAGAACAGTAAGATCATTTGCCCAAGAAGATTATGAAACAACACGCTACTCAGAGAAAGTTAATGAAACACTTAATCTTGGTCTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGCCTTAATGCTGCATCTACACTTTCAGTTATTATAGTTGTTATATATGGAGCTAATTTGACAATAAAGGGTTACATGTCCTCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTGGGTTCTTCTATATCCGGTCTGTCAGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTACCTCATCCATGCCTAAGTCAGGAGATAAATGTCCACTTGGTGATCAAGATGGGGAAGTAGAACTAGATGATGTGTGGTTTGCCTATCCATCACGCCCTAGTCATCCGGTGCTCAAGGGCATTACATTGAAGCTGCATCCAGGATCAAAGGTTGCTCTTGTCGGTCCAAGTGGTGGTGGAAAGAGTACAATTGCAAACTTAATTGAAAGATTTTATGACCCAACCAAGGGGAAGATTCTACTGAATGGGGTTCCTTTGGTAGAAATATCACACAAGCATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAGTGAACGATGTTGATATAGAAAACGCTGCTAAAATGGCCAATGCACATGAATTTATATCAAAATTCCCAGAAAAATACCAGACCTTTGTTGGAGAACGTGGGGTAAGGCTTTCAGGAGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTGCTTATGGACCCAAAAATTCTCCTCTTGGATGAAGCCACCAGTGCCCTAGATGCAGAAAGTGAATACCTAGTGCAGGATGCCATGGAATCTCTCATGAAAGGaagaacagttctagtcattgctcacaggttatcaactgttaaaactgctgatactgttgcagttatatctgatggccaagtagttgagagaggCAACCATGAAGAGCTTCTCAACAAGAATGGTGTCTATACTGCATTGGTCAAGAGACAACTGCAAACAACAAAAACCGAAATCTCGGTCTAGCAAATTATGAATAACCAAACCCTACCACCTTGCTTGTTAAACACTCTAGTCTGCCCACAAAAGGGGCATATGATACTGAGGCACAAGTTCCTTGGAAGACCTTCACTTCCACAGTTGCAAGTTACAGCATTACCTTCTGTTTCAGAGGAAAGAAAACGAAGGAAGTGAGAAAAATTTTAAAATTGAATAGAAGAGAAAATAGAAAGAAAGAAAATTTTGATTTTTTCTTCTAAATGTCAATTTTTCTTTCTTTCCTCAACCAAATAAAAGAAAATGTATCATTGTCTGTATTTTCTTCTAGTCCAAACACATGATTAAAGTTTAGCAACAGATTTGGTGTAACTAACGATATTTTAAAACCGAAAGTAATTAGTGTGATCTATACTGTTAGAATATCTGCTAGAGTATTA
Coding sequences of Glyma.05g019400
>Glyma.05g019400.1 sequence-type=CDS polypeptide=Glyma.05g019400.1.p locus=Glyma.05g019400 ID=Glyma.05g019400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACGGCTTAAGAAGTCAAAGAGCCCCTCTCTTGGAGGCTGAGGGTGCTGGAAGAGGAAAGAGGGATGGTGCCGCGGAAGGTCAAGTCTCAGACCTTGAACATGGTGATGCAGTGCCGGCGGAAAATGTGGGATTCTGTCGAGTGCTTTCACTTGCAAAACCTGAGGCTGGAAAATTAATGATTGGTACAGTGGCTCTGTTGATTGCAGCCACATCAAGTATATTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCAAGGGAAATGCAAACTCCAGAGGAGAAAGATGAAGCTTTGAATGCTGTTAAGAACACCATACTAGAAATTTTTCTGATCGTTGTCTTTGGTTCAATTTGCACTGCACTTCGAGCTTGGCTTTTTTATACTGCTAGTGAAAGGGTTGTTGCACGGCTGAGAAAGAATTTGTTCAGTCACCTTGTAAACCAGGAGATAGCTTTCTTTGATGTTACTCGAACCGGGGAACTTTTAAGTAGGCTATCTGAAGATACTCAGATCATAAAGAATGCTGCAACTACCAATCTTTCTGAGGCCCTGAGAAACTTTTCAACTGCATTAATTGGTCTAAGCTTCATGTTTGCAACATCATGGAAGTTAACATTGTTGGCTTTGGCTGTTGTACCTGTTCTTTCTGTTGCTGTTCGCAAGTTTGGCCGTTACCTGCGTGAACTTTCTCATAAAACTCAAGCTGCAGCTGCAGTAGCTTCATCAATAGCTGAGGAGTCCTTTGGTGCAATAAGAACAGTAAGATCATTTGCCCAAGAAGATTATGAAACAACACGCTACTCAGAGAAAGTTAATGAAACACTTAATCTTGGTCTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGCCTTAATGCTGCATCTACACTTTCAGTTATTATAGTTGTTATATATGGAGCTAATTTGACAATAAAGGGTTACATGTCCTCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTGGGTTCTTCTATATCCGGTCTGTCAGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTACCTCATCCATGCCTAAGTCAGGAGATAAATGTCCACTTGGTGATCAAGATGGGGAAGTAGAACTAGATGATGTGTGGTTTGCCTATCCATCACGCCCTAGTCATCCGGTGCTCAAGGGCATTACATTGAAGCTGCATCCAGGATCAAAGGTTGCTCTTGTCGGTCCAAGTGGTGGTGGAAAGAGTACAATTGCAAACTTAATTGAAAGATTTTATGACCCAACCAAGGGGAAGATTCTACTGAATGGGGTTCCTTTGGTAGAAATATCACACAAGCATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAGTGAACGATGTTGATATAGAAAACGCTGCTAAAATGGCCAATGCACATGAATTTATATCAAAATTCCCAGAAAAATACCAGACCTTTGTTGGAGAACGTGGGGTAAGGCTTTCAGGAGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTGCTTATGGACCCAAAAATTCTCCTCTTGGATGAAGCCACCAGTGCCCTAGATGCAGAAAGTGAATACCTAGTGCAGGATGCCATGGAATCTCTCATGAAAGGAAGAACAGTTCTAGTCATTGCTCACAGGTTATCAACTGTTAAAACTGCTGATACTGTTGCAGTTATATCTGATGGCCAAGTAGTTGAGAGAGGCAACCATGAAGAGCTTCTCAACAAGAATGGTGTCTATACTGCATTGGTCAAGAGACAACTGCAAACAACAAAAACCGAAATCTCGGTCTAG

>Glyma.05g019400.2 sequence-type=CDS polypeptide=Glyma.05g019400.2.p locus=Glyma.05g019400 ID=Glyma.05g019400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACGGCTTAAGAAGTCAAAGAGCCCCTCTCTTGGAGGCTGAGGGTGCTGGAAGAGGAAAGAGGGATGGTGCCGCGGAAGGTCAAGTCTCAGACCTTGAACATGGTGATGCAGTGCCGGCGGAAAATGTGGGATTCTGTCGAGTGCTTTCACTTGCAAAACCTGAGGCTGGAAAATTAATGATTGGTACAGTGGCTCTGTTGATTGCAGCCACATCAAGTATATTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCAAGGGAAATGCAAACTCCAGAGGAGAAAGATGAAGCTTTGAATGCTGTTAAGAACACCATACTAGAAATTTTTCTGATCGTTGTCTTTGGTTCAATTTGCACTGCACTTCGAGCTTGGCTTTTTTATACTGCTAGTGAAAGGGTTGTTGCACGGCTGAGAAAGAATTTGTTCAGTCACCTTGTAAACCAGGAGATAGCTTTCTTTGATGTTACTCGAACCGGGGAACTTTTAAGTAGGCTATCTGAAGATACTCAGATCATAAAGAATGCTGCAACTACCAATCTTTCTGAGGCCCTGAGAAACTTTTCAACTGCATTAATTGGTCTAAGCTTCATGTTTGCAACATCATGGAAGTTAACATTGTTGGCTTTGGCTGTTGTACCTGTTCTTTCTGTTGCTGTTCGCAAGTTTGGCCGTTACCTGCGTGAACTTTCTCATAAAACTCAAGCTGCAGCTGCAGTAGCTTCATCAATAGCTGAGGAGTCCTTTGGTGCAATAAGAACAGTAAGATCATTTGCCCAAGAAGATTATGAAACAACACGCTACTCAGAGAAAGTTAATGAAACACTTAATCTTGGTCTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGCCTTAATGCTGCATCTACACTTTCAGTTATTATAGTTGTTATATATGGAGCTAATTTGACAATAAAGGGTTACATGTCCTCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTGGGTTCTTCTATATCCGGTCTGTCAGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTACCTCATCCATGCCTAAGTCAGGAGATAAATGTCCACTTGGTGATCAAGATGGGGAAGTAGAACTAGATGATGTGTGGTTTGCCTATCCATCACGCCCTAGTCATCCGGTGCTCAAGGGCATTACATTGAAGCTGCATCCAGGATCAAAGGTTGCTCTTGTCGGTCCAAGTGGTGGTGGAAAGAGTACAATTGCAAACTTAATTGAAAGATTTTATGACCCAACCAAGGGGAAGATTCTACTGAATGGGGTTCCTTTGGTAGAAATATCACACAAGCATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAGTGAACGATGTTGATATAGAAAACGCTGCTAAAATGGCCAATGCACATGAATTTATATCAAAATTCCCAGAAAAATACCAGACCTTTGTTGGAGAACGTGGGGTAAGGCTTTCAGGAGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTGCTTATGGACCCAAAAATTCTCCTCTTGGATGAAGCCACCAGTGCCCTAGATGCAGAAAGTGAATACCTAGTGCAGGATGCCATGGAATCTCTCATGAAAGGAAGAACAGTTCTAGTCATTGCTCACAGGTTATCAACTGTTAAAACTGCTGATACTGTTGCAGTTATATCTGATGGCCAAGTAGTTGAGAGAGGCAACCATGAAGAGCTTCTCAACAAGAATGGTGTCTATACTGCATTGGTCAAGAGACAACTGCAAACAACAAAAACCGAAATCTCGGTCTAG
Predicted protein sequences of Glyma.05g019400
>Glyma.05g019400.1.p sequence-type=predicted peptide transcript=Glyma.05g019400.1 locus=Glyma.05g019400 ID=Glyma.05g019400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNGLRSQRAPLLEAEGAGRGKRDGAAEGQVSDLEHGDAVPAENVGFCRVLSLAKPEAGKLMIGTVALLIAATSSILVQKFGGKIIDIVSREMQTPEEKDEALNAVKNTILEIFLIVVFGSICTALRAWLFYTASERVVARLRKNLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNFSTALIGLSFMFATSWKLTLLALAVVPVLSVAVRKFGRYLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEDYETTRYSEKVNETLNLGLKQAKVVGLFSGGLNAASTLSVIIVVIYGANLTIKGYMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRTSSMPKSGDKCPLGDQDGEVELDDVWFAYPSRPSHPVLKGITLKLHPGSKVALVGPSGGGKSTIANLIERFYDPTKGKILLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVNDVDIENAAKMANAHEFISKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMESLMKGRTVLVIAHRLSTVKTADTVAVISDGQVVERGNHEELLNKNGVYTALVKRQLQTTKTEISV*

>Glyma.05g019400.2.p sequence-type=predicted peptide transcript=Glyma.05g019400.2 locus=Glyma.05g019400 ID=Glyma.05g019400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNGLRSQRAPLLEAEGAGRGKRDGAAEGQVSDLEHGDAVPAENVGFCRVLSLAKPEAGKLMIGTVALLIAATSSILVQKFGGKIIDIVSREMQTPEEKDEALNAVKNTILEIFLIVVFGSICTALRAWLFYTASERVVARLRKNLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNFSTALIGLSFMFATSWKLTLLALAVVPVLSVAVRKFGRYLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEDYETTRYSEKVNETLNLGLKQAKVVGLFSGGLNAASTLSVIIVVIYGANLTIKGYMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRTSSMPKSGDKCPLGDQDGEVELDDVWFAYPSRPSHPVLKGITLKLHPGSKVALVGPSGGGKSTIANLIERFYDPTKGKILLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVNDVDIENAAKMANAHEFISKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMESLMKGRTVLVIAHRLSTVKTADTVAVISDGQVVERGNHEELLNKNGVYTALVKRQLQTTKTEISV*






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