SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.05g016500

Feature Type:gene_model
Chromosome:Gm05
Start:1474491
stop:1476161
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g016500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G74010.1AT Calcium-dependent phosphotriesterase superfamily protein JGI N/AIEA
GO:0009058GO-bp biosynthetic process EnsemblGenomesN/AIEA
GO:0009058GO-bp biosynthetic process JGI N/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016788GO-mf hydrolase activity, acting on ester bonds EnsemblGenomesN/AIEA
GO:0016844GO-mf strictosidine synthase activity EnsemblGenomesN/AIEA
GO:0016844GO-mf strictosidine synthase activity JGI N/AIEA
KOG1520 KOG Predicted alkaloid synthase/Surface mucin Hemomucin JGI N/AIEA
PTHR10426Panther STRICTOSIDINE SYNTHASE-RELATED JGI N/AIEA
PTHR10426:SF5Panther JGI N/AIEA
PF03088PFAM Strictosidine synthase JGI N/AIEA
GN7V-52184SoyCyc9-rxn strictosidine synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.05g016500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g016500
ParalogEvidenceComments
Glyma.17g083600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g016500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g07630 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g016500
>Glyma.05g016500.1 sequence-type=CDS polypeptide=Glyma.05g016500.1.p locus=Glyma.05g016500 ID=Glyma.05g016500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGTCAAACATTGCAACAATGATAGCTATCTCTGCAATTTTTATGATTTTCTTCTTGTGTTCGCCATCAGTGGCTATATTAATCAGCAGGTTACCACTACCGTCACCGGTGACAGGCCCTGAGTCCGTAGCATTCGACCGGAACGGTGGAGGGCCATATGTTGGTGTTTCTGATGGAAGAATTCTCAAATATGCTGGTCCAGGCGAGGGTTTCAAGGAATATGCTTTCACTTCACCAAACAGGAACAAGACAATCTGTGATGGGCTTGCTGATTTCTCAGAACTCCAAGCAACATGTGGGAGGCCATTAGGATTACGTTTCAACCATCAAACAAACGAACTATACGTAGCGGATGCTTATTCTGGGCTTATCAAGATTGGACCCAATGGAGGGGCTCCAACCCAATGCTTTAAAGATATACAACCACAACAAGAGAATGTGAACACTACTCTTCAGTTTCTCGATGGCTTGGATGTAGACGTCAACACTGGAATCGTTTATTTCACCCAAGCTAGTGCTAACTACGGTTTCAAGGATGCTCAGGCACTACAAAGCAGTAGAGACCAATCTGGGAGCCTATTCTCACTGGATCCCAAAACGAACCAAACAAGAGTGTTGATGAGGGGTCTTGCATTGGCATCTGGGGTGGCAGTAAGCAGAGACGGGTCATTTGTGCTTGTTAGTGAATACTTGGCAAACAGAATTCAGAGATTTTGGCTAAGAGGGCCAAGAGCAAATTCTTCTGAACTATTCTTGCAACTCACTGGTAGACCAGACAACATTAGGAGCAACCAGAGAGGTCAATTTTGGGTGGCAGTGAATGGTGTTTTAGGACCAAATCCACCTCCTAGGCCCACTATTTTACCTGCTGGAGTCAGAATTAGTGAGAACGGTATCATTTTACGGATTGTTTCTCTTGTCCAGGAGTTTGGTAGTGAGGCAGTGAGTGAGATTCATGAGCATAACGGGACACTCTACTCTGGCTCCTTGCAAGCTTCCTATGTTCCCATTTCTGCTATGATCTAG
Predicted protein sequences of Glyma.05g016500
>Glyma.05g016500.1.p sequence-type=predicted peptide transcript=Glyma.05g016500.1 locus=Glyma.05g016500 ID=Glyma.05g016500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLSNIATMIAISAIFMIFFLCSPSVAILISRLPLPSPVTGPESVAFDRNGGGPYVGVSDGRILKYAGPGEGFKEYAFTSPNRNKTICDGLADFSELQATCGRPLGLRFNHQTNELYVADAYSGLIKIGPNGGAPTQCFKDIQPQQENVNTTLQFLDGLDVDVNTGIVYFTQASANYGFKDAQALQSSRDQSGSLFSLDPKTNQTRVLMRGLALASGVAVSRDGSFVLVSEYLANRIQRFWLRGPRANSSELFLQLTGRPDNIRSNQRGQFWVAVNGVLGPNPPPRPTILPAGVRISENGIILRIVSLVQEFGSEAVSEIHEHNGTLYSGSLQASYVPISAMI*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo