Glyma.05g016400

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Report for Sequence Feature Glyma.05g016400

Feature Type:	gene_model
Chromosome:	Gm05
Start:	1464355
stop:	1473344
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05g016400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G72550.1	AT	tRNA synthetase beta subunit family protein	JGI	N/A	IEA
GO:0006432	GO-bp	phenylalanyl-tRNA aminoacylation	EnsemblGenomes	N/A	IEA
GO:0006432	GO-bp	phenylalanyl-tRNA aminoacylation	JGI	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0009328	GO-cc	phenylalanine-tRNA ligase complex	EnsemblGenomes	N/A	IEA
GO:0000166	GO-mf	nucleotide binding	EnsemblGenomes	N/A	IEA
GO:0000287	GO-mf	magnesium ion binding	EnsemblGenomes	N/A	IEA
GO:0000287	GO-mf	magnesium ion binding	JGI	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
GO:0003723	GO-mf	RNA binding	JGI	N/A	IEA
GO:0004826	GO-mf	phenylalanine-tRNA ligase activity	EnsemblGenomes	N/A	IEA
GO:0004826	GO-mf	phenylalanine-tRNA ligase activity	JGI	N/A	IEA
GO:0005524	GO-mf	ATP binding	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	JGI	N/A	IEA
KOG2472	KOG	Phenylalanyl-tRNA synthetase beta subunit	JGI	N/A	IEA
PTHR10947	Panther	PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47	JGI	N/A	IEA
PF03483	PFAM	B3/4 domain	JGI	N/A	IEA
PF03484	PFAM	tRNA synthetase B5 domain	JGI	N/A	IEA

Expression Patterns of Glyma.05g016400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g016400 not represented in the dataset	Glyma.05g016400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.05g016400

Paralog	Evidence	Comments
Glyma.17g083700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g016400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma05g07640	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.05g016400

Limit To All Plant Sequences

>Glyma.05g016400.2 sequence-type=transcript locus=Glyma.05g016400 ID=Glyma.05g016400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTAAGGCAATGTATCCATCGGATTCTGAACATCTCTTTCTCCGTCGTGGTTGCACTTGTACTCACTCAATCCGAGACCAAAACGGCGCCATGCCTACCGTCAGTGTGGGGCGGGATCGCCTGTTTGCGGCTCTAGGAAAGACTTACACGCAAGAGGAATTCGAAGACTTGTGCTTCAGTTTCGGGATCGAGCTTGACGACGTCACGACGGAGAAGGCAATTGTGAGAAAAGAGAAGCATTTGGAGGAAGAAGAAGCTGATGAGGACGAAGAAGTTATCTACAAAATCGAAGTTCCTGCCAACAGATATGACCTCCTGTGCCTTGAAGGGCTTGCTCAAGCCCTCCGAGTTTTCTGTGAGTTCCAGGAGATTCCCACTTACAAACTGTCCAAGATCAGTAAGGATGCAATGCTGAAAATGCACGTGAAGCCGGAGACTTCTCTGATTCGTCCATATGTTGTATGTGCTGTATTAAGAGGTATAACTTTTGATAAAGCAAGATACAACAGCTTTATCGATCTCCAAGACAAGCTTCACCAAAACATATGTCGCCGAAGAACCCTTGTTGCCATTGGAACCCATGACCTGGATACATTGGAGGGGCCTTTCACCTATGAGGCTTTGCCACCTTCAAGTATAACTTTTACGCCACTAAAGCAGGAAAGAAACTTCAGGGCTGATGATCTAATGGAGTTCTACAAATCAGATTTGAAACTCAAGAAATTCTTGCATATAATTGAGGATTCCCCTGTTTTCCCTGTTATATATGACAGTAAGAGAACTGTGTTATCCTTACCCCCAATTATTAATGGTGCACATTCAGCCATCACTCTGGAGACAAAGAATGTATTTATTGAATGTACTGCAACTGATCTGACAAAAGCGAAAGTTGTTTTAAATACAATGGTAACAGCCTTCTCAGAATATTGTGAAAACAAATTTGTCATTGAACCAGTTGAAGTTATTTCTTCTGATGGCAAGTCAAACATATACCCTGATTTATCTGTCTACAATATGGAAGTTTCTCTATCTTACATTACTGGATTGATTGGGGTATCATTGGAAGCAGAAGAGGTCACTAAGTTCTTAAATCGGATGCAGTTGCATGCCAAACTGTCTACATCTGATAATAAGCAGTGTAACTTTGTGGTATCTGTACCTCCTTCTAGAAGTGATGTTCTTCACCCATGTGATGTTATGGAGGATGTGGCAATTGCTTATGGATTCAATGCTATTAAGGATCAAGCAGTAGTAGATAATAAAGGCTCAAAGAGGTTGGCTGCTTCCTTGACTCTACTTCCTCTGAATGAGCTCAGTGATCTTATCAGAAAAGAGGTTGCATTGATTGGTTTCACAGAGGTCTTGACATTTATACTCTGCTCTAAAAAGGAAAACTTTGCCATGCTTAACCGCAATGATGATAAATCTAAAGCAGTTATCATTGGAAACCCTAGGTCTTCAGACTTTGAGGCTGTGCGGACTAGTCTTATGCCTGGCATTTTGAAAACTGTTGCTCACAACAAGGATCATCCAAAGCCCATAAAGATTTTTGAAGTGGGTGATATAGCAGTTTTGGACGACAAAAGAGATGTTGGTGCAAAAAATCTTCGCCAACTTGCTGCTCTGTACTGTGGTGCTAATGCTGGATTTGAGATAATTCATGGCTTGGTCGACAGAGTAATGGAAAAGAATGGGGTTCCCTTTGTTTCACCTGGCGATAAATCGGGTTATTATATTGAGCAGTCAGATGAGCCTGAGTTTCTTGCCGGTAGACAAGCTAGAATCATTTACAAAGGAAAACATATTGGCACTTTTGGCATTGTTCATCCAGAGGTATTAAACAACTTTGACATTCCTGATCCCTGCTCCTTTGTTGAACTTAACATCGAAAGTTTCCTATAAAGATTATCTGTATCAATTGGGAATCAAGATGCTCAACTGCTTGAGTGACTATATGGGAATCAAAACACTTCGTGGAATTTAGAACTACACTATAGCTGGGGAGCGGAATGTTACTGATGTGCCCTAAATTTGGGTGTTTAGTTTGATTATATACCCGTAAAATTTTCCTAAGTTTCTCCGTTGTTAAATGTTTAGAACATCAGAAGCTACGAATTGGTTAGTAGGGATAATCTCGACCATAAATTATAGTTATTTTTTAAAATAGTTGATTTTGGCCTTAAAACCAAGATAGCAAGGATATTTATTCGTTTGAAAATTTTGTCAATACAAAAGTGAGTCACAAGCCACATGTCTACTTCAGCGATAGTTTGTCATCCTTGTCTTTTGACTCTTGGATGTTTTATGTTTGATAAATTTATATTGACGTGGCAAAA

Coding sequences of Glyma.05g016400

Limit To All Plant Sequences

>Glyma.05g016400.1 sequence-type=CDS polypeptide=Glyma.05g016400.1.p locus=Glyma.05g016400 ID=Glyma.05g016400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATCCATCGGATTCTGAACATCTCTTTCTCCGTCGTGGTTGCACTTGTACTCACTCAATCCGAGACCAAAACGGCGCCATGCCTACCGTCAGTGTGGGGCGGGATCGCCTGTTTGCGGCTCTAGGAAAGACTTACACGCAAGAGGAATTCGAAGACTTGTGCTTCAGTTTCGGGATCGAGCTTGACGACGTCACGACGGAGAAGGCAATTGTGAGAAAAGAGAAGCATTTGGAGGAAGAAGAAGCTGATGAGGACGAAGAAGTTATCTACAAAATCGAAGTTCCTGCCAACAGATATGACCTCCTGTGCCTTGAAGGGCTTGCTCAAGCCCTCCGAGTTTTCTGTGAGTTCCAGGAGATTCCCACTTACAAACTGTCCAAGATCAGTAAGGATGCAATGCTGAAAATGCACGTGAAGCCGGAGACTTCTCTGATTCGTCCATATGTTGTATGTGCTGTATTAAGAGGTATAACTTTTGATAAAGCAAGATACAACAGCTTTATCGATCTCCAAGACAAGCTTCACCAAAACATATGTCGCCGAAGAACCCTTGTTGCCATTGGAACCCATGACCTGGATACATTGGAGGGGCCTTTCACCTATGAGGCTTTGCCACCTTCAAGTATAACTTTTACGCCACTAAAGCAGGAAAGAAACTTCAGGGCTGATGATCTAATGGAGTTCTACAAATCAGATTTGAAACTCAAGAAATTCTTGCATATAATTGAGGATTCCCCTGTTTTCCCTGTTATATATGACAGTAAGAGAACTGTGTTATCCTTACCCCCAATTATTAATGGTGCACATTCAGCCATCACTCTGGAGACAAAGAATGTATTTATTGAATGTACTGCAACTGATCTGACAAAAGCGAAAGTTGTTTTAAATACAATGGTAACAGCCTTCTCAGAATATTGTGAAAACAAATTTGTCATTGAACCAGTTGAAGTTATTTCTTCTGATGGCAAGTCAAACATATACCCTGATTTATCTGTCTACAATATGGAAGTTTCTCTATCTTACATTACTGGATTGATTGGGGTATCATTGGAAGCAGAAGAGGTCACTAAGTTCTTAAATCGGATGCAGTTGCATGCCAAACTGTCTACATCTGATAATAAGCAGTGTAACTTTGTGGTATCTGTACCTCCTTCTAGAAGTGATGTTCTTCACCCATGTGATGTTATGGAGGATGTGGCAATTGCTTATGGATTCAATGCTATTAAGGATCAAGCAGTAGTAGATAATAAAGGCTCAAAGAGGTTGGCTGCTTCCTTGACTCTACTTCCTCTGAATGAGCTCAGTGATCTTATCAGAAAAGAGGTTGCATTGATTGGTTTCACAGAGGTCTTGACATTTATACTCTGCTCTAAAAAGGAAAACTTTGCCATGCTTAACCGCAATGATGATAAATCTAAAGCAGTTATCATTGGAAACCCTAGGTCTTCAGACTTTGAGGCTGTGCGGACTAGTCTTATGCCTGGCATTTTGAAAACTGTTGCTCACAACAAGGATCATCCAAAGCCCATAAAGATTTTTGAAGTGGGTGATATAGCAGTTTTGGACGACAAAAGAGATGTTGGTGCAAAAAATCTTCGCCAACTTGCTGCTCTGTACTGTGGTGCTAATGCTGGATTTGAGATAATTCATGGCTTGGTCGACAGAGTAATGGAAAAGAATGGGGTTCCCTTTGTTTCACCTGGCGATAAATCGGGTTATTATATTGAGCAGTCAGATGAGCCTGAGTTTCTTGCCGGTAGACAAGCTAGAATCATTTACAAAGGAAAACATATTGGCACTTTTGGCATTGTTCATCCAGAGGTATTAAACAACTTTGACATTCCTGATCCCTGCTCCTTTGTTGAACTTAACATCGAAAGTTTCCTATAA

>Glyma.05g016400.2 sequence-type=CDS polypeptide=Glyma.05g016400.2.p locus=Glyma.05g016400 ID=Glyma.05g016400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATCCATCGGATTCTGAACATCTCTTTCTCCGTCGTGGTTGCACTTGTACTCACTCAATCCGAGACCAAAACGGCGCCATGCCTACCGTCAGTGTGGGGCGGGATCGCCTGTTTGCGGCTCTAGGAAAGACTTACACGCAAGAGGAATTCGAAGACTTGTGCTTCAGTTTCGGGATCGAGCTTGACGACGTCACGACGGAGAAGGCAATTGTGAGAAAAGAGAAGCATTTGGAGGAAGAAGAAGCTGATGAGGACGAAGAAGTTATCTACAAAATCGAAGTTCCTGCCAACAGATATGACCTCCTGTGCCTTGAAGGGCTTGCTCAAGCCCTCCGAGTTTTCTGTGAGTTCCAGGAGATTCCCACTTACAAACTGTCCAAGATCAGTAAGGATGCAATGCTGAAAATGCACGTGAAGCCGGAGACTTCTCTGATTCGTCCATATGTTGTATGTGCTGTATTAAGAGGTATAACTTTTGATAAAGCAAGATACAACAGCTTTATCGATCTCCAAGACAAGCTTCACCAAAACATATGTCGCCGAAGAACCCTTGTTGCCATTGGAACCCATGACCTGGATACATTGGAGGGGCCTTTCACCTATGAGGCTTTGCCACCTTCAAGTATAACTTTTACGCCACTAAAGCAGGAAAGAAACTTCAGGGCTGATGATCTAATGGAGTTCTACAAATCAGATTTGAAACTCAAGAAATTCTTGCATATAATTGAGGATTCCCCTGTTTTCCCTGTTATATATGACAGTAAGAGAACTGTGTTATCCTTACCCCCAATTATTAATGGTGCACATTCAGCCATCACTCTGGAGACAAAGAATGTATTTATTGAATGTACTGCAACTGATCTGACAAAAGCGAAAGTTGTTTTAAATACAATGGTAACAGCCTTCTCAGAATATTGTGAAAACAAATTTGTCATTGAACCAGTTGAAGTTATTTCTTCTGATGGCAAGTCAAACATATACCCTGATTTATCTGTCTACAATATGGAAGTTTCTCTATCTTACATTACTGGATTGATTGGGGTATCATTGGAAGCAGAAGAGGTCACTAAGTTCTTAAATCGGATGCAGTTGCATGCCAAACTGTCTACATCTGATAATAAGCAGTGTAACTTTGTGGTATCTGTACCTCCTTCTAGAAGTGATGTTCTTCACCCATGTGATGTTATGGAGGATGTGGCAATTGCTTATGGATTCAATGCTATTAAGGATCAAGCAGTAGTAGATAATAAAGGCTCAAAGAGGTTGGCTGCTTCCTTGACTCTACTTCCTCTGAATGAGCTCAGTGATCTTATCAGAAAAGAGGTTGCATTGATTGGTTTCACAGAGGTCTTGACATTTATACTCTGCTCTAAAAAGGAAAACTTTGCCATGCTTAACCGCAATGATGATAAATCTAAAGCAGTTATCATTGGAAACCCTAGGTCTTCAGACTTTGAGGCTGTGCGGACTAGTCTTATGCCTGGCATTTTGAAAACTGTTGCTCACAACAAGGATCATCCAAAGCCCATAAAGATTTTTGAAGTGGGTGATATAGCAGTTTTGGACGACAAAAGAGATGTTGGTGCAAAAAATCTTCGCCAACTTGCTGCTCTGTACTGTGGTGCTAATGCTGGATTTGAGATAATTCATGGCTTGGTCGACAGAGTAATGGAAAAGAATGGGGTTCCCTTTGTTTCACCTGGCGATAAATCGGGTTATTATATTGAGCAGTCAGATGAGCCTGAGTTTCTTGCCGGTAGACAAGCTAGAATCATTTACAAAGGAAAACATATTGGCACTTTTGGCATTGTTCATCCAGAGGTATTAAACAACTTTGACATTCCTGATCCCTGCTCCTTTGTTGAACTTAACATCGAAAGTTTCCTATAA

Predicted protein sequences of Glyma.05g016400

Limit To All Plant Sequences

>Glyma.05g016400.1.p sequence-type=predicted peptide transcript=Glyma.05g016400.1 locus=Glyma.05g016400 ID=Glyma.05g016400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYPSDSEHLFLRRGCTCTHSIRDQNGAMPTVSVGRDRLFAALGKTYTQEEFEDLCFSFGIELDDVTTEKAIVRKEKHLEEEEADEDEEVIYKIEVPANRYDLLCLEGLAQALRVFCEFQEIPTYKLSKISKDAMLKMHVKPETSLIRPYVVCAVLRGITFDKARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLEGPFTYEALPPSSITFTPLKQERNFRADDLMEFYKSDLKLKKFLHIIEDSPVFPVIYDSKRTVLSLPPIINGAHSAITLETKNVFIECTATDLTKAKVVLNTMVTAFSEYCENKFVIEPVEVISSDGKSNIYPDLSVYNMEVSLSYITGLIGVSLEAEEVTKFLNRMQLHAKLSTSDNKQCNFVVSVPPSRSDVLHPCDVMEDVAIAYGFNAIKDQAVVDNKGSKRLAASLTLLPLNELSDLIRKEVALIGFTEVLTFILCSKKENFAMLNRNDDKSKAVIIGNPRSSDFEAVRTSLMPGILKTVAHNKDHPKPIKIFEVGDIAVLDDKRDVGAKNLRQLAALYCGANAGFEIIHGLVDRVMEKNGVPFVSPGDKSGYYIEQSDEPEFLAGRQARIIYKGKHIGTFGIVHPEVLNNFDIPDPCSFVELNIESFL*

>Glyma.05g016400.2.p sequence-type=predicted peptide transcript=Glyma.05g016400.2 locus=Glyma.05g016400 ID=Glyma.05g016400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYPSDSEHLFLRRGCTCTHSIRDQNGAMPTVSVGRDRLFAALGKTYTQEEFEDLCFSFGIELDDVTTEKAIVRKEKHLEEEEADEDEEVIYKIEVPANRYDLLCLEGLAQALRVFCEFQEIPTYKLSKISKDAMLKMHVKPETSLIRPYVVCAVLRGITFDKARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLEGPFTYEALPPSSITFTPLKQERNFRADDLMEFYKSDLKLKKFLHIIEDSPVFPVIYDSKRTVLSLPPIINGAHSAITLETKNVFIECTATDLTKAKVVLNTMVTAFSEYCENKFVIEPVEVISSDGKSNIYPDLSVYNMEVSLSYITGLIGVSLEAEEVTKFLNRMQLHAKLSTSDNKQCNFVVSVPPSRSDVLHPCDVMEDVAIAYGFNAIKDQAVVDNKGSKRLAASLTLLPLNELSDLIRKEVALIGFTEVLTFILCSKKENFAMLNRNDDKSKAVIIGNPRSSDFEAVRTSLMPGILKTVAHNKDHPKPIKIFEVGDIAVLDDKRDVGAKNLRQLAALYCGANAGFEIIHGLVDRVMEKNGVPFVSPGDKSGYYIEQSDEPEFLAGRQARIIYKGKHIGTFGIVHPEVLNNFDIPDPCSFVELNIESFL*

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