Glyma.05g016000

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Report for Sequence Feature Glyma.05g016000

Feature Type:	gene_model
Chromosome:	Gm05
Start:	1447802
stop:	1450865
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05g016000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G23060.1	AT	calcium sensing receptor	JGI	N/A	IEA
PF00581	PFAM	Rhodanese-like domain	JGI	N/A	IEA

Expression Patterns of Glyma.05g016000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.05g016000

Paralog	Evidence	Comments
Glyma.17g084300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g016000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma05g07680	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.05g016000

Limit To All Plant Sequences

>Glyma.05g016000.2 sequence-type=transcript locus=Glyma.05g016000 ID=Glyma.05g016000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TATTCCAAGTTGGATATTAGAATTTTCCTTTGTCCACCAAAGAGCATGCCATGTGGAGTGGTGATAGTTTTGGAGCCTCAAATATAGATGGTGCATAGGTGGACATAAAAAGCAATGAAAACTCTGGCAGCCCTTTGGATTTTGGCCACACATCTCTGATCACTCTATAGACCACTTCGTTGATCTATCATTCTTCATCAACCAACCAGCCTCCAAagtcagtgaatagtgagtgagtgagtAGCAGCTAGCAATGGAAATTACTGCCATGGCTTCTTCAGCTACTCCTCCACGACCTTCTCTTCCAACTCCTTCCACTTCTCCACACACAGTAGTCACCACCACCTTTAGCAAACCTCAACTCAGACGCTCTCACATAGCACTACCAACTTCAACCACCATTTCATTGCTCGCTCTCTTCGCCCCTCCAAACGAAGCCAAAGCCGCTGTCAGCATCGCCAAGGACCAGATTGTCTCTTCTCTCACCCAAGTTCAGGAAATGGGTTCGGGTGTGCTGGACACGGCACAGCGTGTTGCTGAAGTGATAGGGAACGCTTTGAAGCCTGGCATCGAAACGGCGTTGCCGATAGTGCAGCAGGCTGGAGAAGAGGCCTTGAAAATTGCTTCCCCTGCCATCTCCGAAGCTTCCAAGAAGGCCCAAGAAGCACTCCAAAGCTCCGGTGTTGATACTGAACCTGTTATCACTGCTGCTAAGACAGTGGCAGATGCTGCACAACAAACAACCAAGGTGATTGAAGTTGCCAAGCCAATAGCTTCCTCAACCGTCGAAACCATATCTTCTTCAGACCCTACTGTGATTGCTGGAACAGCAGGAGCACTATTTGTTGCTTACCTCCTAATTCCTCCTATCGGGTCTGTCATCTTGTCTAATCTTCGTGGTTACAAAGGAGACCTAACTCCTGCTCAAGCCCTTGATTTGATATCTACACAGAACTACGTTTTGATTGATATTAGGTCAGAGAAAGATAAGGACAGGGCTGGTATCCCTCGCCTTCCCTCTAATGCTAAAAACAGGATGGCTGCCATTCCTTTGGAAGAACTGCAAAGCAAGCTCAGGGGGCAGGTCAAGAATGTTAAGAAATTGGAAGCTGAAATAGTCGCTTTGAAGATTTCATATCTCAAGAAAATCAACAAAGGCACCAATGTTGTGATCTTGGACTCGTACTCGGACGTAGCAAAAACAGTTGGAAGAACGCTAACCAGCCTTGGCTTTAAGAACACATGGATTGTTGCTGATGGATTCTCTGGGAACAAAGGGTGGTTGCAGAGTAGATTAGGAACAGATTCGTATAACTTCTCGTTTGCAGAGGTGCTGTCACCGTCTAGGGTCATCCCTGCGGCTGTGAGAAGTTTTGGCACAACCAGCCAATCTAGCACGAAGCTTCTTCCTGGGGCTGACTAACTTTTTTCTGTTCTAAAATCTTGTGCAAATAGAAATTCACTCTTGTGCATGCTTGAGTCATCCAATATATTTATTTTGATTATTTCCCATAATTATTTCATCAATGTCTAAGTCTTTTATTTCCAACCTTTTTCCCTCTGTGGGTGTTTTGAGTGGCTACGGCTACGTGGTCTTCCCCTAAGTTGCAACGACTGTGGAGAATGCCAAAAGGTTGAAGTTGATGATGTTTAA

Coding sequences of Glyma.05g016000

Limit To All Plant Sequences

>Glyma.05g016000.1 sequence-type=CDS polypeptide=Glyma.05g016000.1.p locus=Glyma.05g016000 ID=Glyma.05g016000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAATTACTGCCATGGCTTCTTCAGCTACTCCTCCACGACCTTCTCTTCCAACTCCTTCCACTTCTCCACACACAGTAGTCACCACCACCTTTAGCAAACCTCAACTCAGACGCTCTCACATAGCACTACCAACTTCAACCACCATTTCATTGCTCGCTCTCTTCGCCCCTCCAAACGAAGCCAAAGCCGCTGTCAGCATCGCCAAGGACCAGATTGTCTCTTCTCTCACCCAAGTGGAGAAAACGCTGGATCAGGTTCAGGAAATGGGTTCGGGTGTGCTGGACACGGCACAGCGTGTTGCTGAAGTGATAGGGAACGCTTTGAAGCCTGGCATCGAAACGGCGTTGCCGATAGTGCAGCAGGCTGGAGAAGAGGCCTTGAAAATTGCTTCCCCTGCCATCTCCGAAGCTTCCAAGAAGGCCCAAGAAGCACTCCAAAGCTCCGGTGTTGATACTGAACCTGTTATCACTGCTGCTAAGACAGTGGCAGATGCTGCACAACAAACAACCAAGGTGATTGAAGTTGCCAAGCCAATAGCTTCCTCAACCGTCGAAACCATATCTTCTTCAGACCCTACTGTGATTGCTGGAACAGCAGGAGCACTATTTGTTGCTTACCTCCTAATTCCTCCTATCGGGTCTGTCATCTTGTCTAATCTTCGTGGTTACAAAGGAGACCTAACTCCTGCTCAAGCCCTTGATTTGATATCTACACAGAACTACGTTTTGATTGATATTAGGTCAGAGAAAGATAAGGACAGGGCTGGTATCCCTCGCCTTCCCTCTAATGCTAAAAACAGGATGGCTGCCATTCCTTTGGAAGAACTGCAAAGCAAGCTCAGGGGGCAGGTCAAGAATGTTAAGAAATTGGAAGCTGAAATAGTCGCTTTGAAGATTTCATATCTCAAGAAAATCAACAAAGGCACCAATGTTGTGATCTTGGACTCGTACTCGGACGTAGCAAAAACAGTTGGAAGAACGCTAACCAGCCTTGGCTTTAAGAACACATGGATTGTTGCTGATGGATTCTCTGGGAACAAAGGGTGGTTGCAGAGTAGATTAGGAACAGATTCGTATAACTTCTCGTTTGCAGAGGTGCTGTCACCGTCTAGGGTCATCCCTGCGGCTGTGAGAAGTTTTGGCACAACCAGCCAATCTAGCACGAAGCTTCTTCCTGGGGCTGACTAA

>Glyma.05g016000.2 sequence-type=CDS polypeptide=Glyma.05g016000.2.p locus=Glyma.05g016000 ID=Glyma.05g016000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAATTACTGCCATGGCTTCTTCAGCTACTCCTCCACGACCTTCTCTTCCAACTCCTTCCACTTCTCCACACACAGTAGTCACCACCACCTTTAGCAAACCTCAACTCAGACGCTCTCACATAGCACTACCAACTTCAACCACCATTTCATTGCTCGCTCTCTTCGCCCCTCCAAACGAAGCCAAAGCCGCTGTCAGCATCGCCAAGGACCAGATTGTCTCTTCTCTCACCCAAGTTCAGGAAATGGGTTCGGGTGTGCTGGACACGGCACAGCGTGTTGCTGAAGTGATAGGGAACGCTTTGAAGCCTGGCATCGAAACGGCGTTGCCGATAGTGCAGCAGGCTGGAGAAGAGGCCTTGAAAATTGCTTCCCCTGCCATCTCCGAAGCTTCCAAGAAGGCCCAAGAAGCACTCCAAAGCTCCGGTGTTGATACTGAACCTGTTATCACTGCTGCTAAGACAGTGGCAGATGCTGCACAACAAACAACCAAGGTGATTGAAGTTGCCAAGCCAATAGCTTCCTCAACCGTCGAAACCATATCTTCTTCAGACCCTACTGTGATTGCTGGAACAGCAGGAGCACTATTTGTTGCTTACCTCCTAATTCCTCCTATCGGGTCTGTCATCTTGTCTAATCTTCGTGGTTACAAAGGAGACCTAACTCCTGCTCAAGCCCTTGATTTGATATCTACACAGAACTACGTTTTGATTGATATTAGGTCAGAGAAAGATAAGGACAGGGCTGGTATCCCTCGCCTTCCCTCTAATGCTAAAAACAGGATGGCTGCCATTCCTTTGGAAGAACTGCAAAGCAAGCTCAGGGGGCAGGTCAAGAATGTTAAGAAATTGGAAGCTGAAATAGTCGCTTTGAAGATTTCATATCTCAAGAAAATCAACAAAGGCACCAATGTTGTGATCTTGGACTCGTACTCGGACGTAGCAAAAACAGTTGGAAGAACGCTAACCAGCCTTGGCTTTAAGAACACATGGATTGTTGCTGATGGATTCTCTGGGAACAAAGGGTGGTTGCAGAGTAGATTAGGAACAGATTCGTATAACTTCTCGTTTGCAGAGGTGCTGTCACCGTCTAGGGTCATCCCTGCGGCTGTGAGAAGTTTTGGCACAACCAGCCAATCTAGCACGAAGCTTCTTCCTGGGGCTGACTAA

Predicted protein sequences of Glyma.05g016000

Limit To All Plant Sequences

>Glyma.05g016000.1.p sequence-type=predicted peptide transcript=Glyma.05g016000.1 locus=Glyma.05g016000 ID=Glyma.05g016000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEITAMASSATPPRPSLPTPSTSPHTVVTTTFSKPQLRRSHIALPTSTTISLLALFAPPNEAKAAVSIAKDQIVSSLTQVEKTLDQVQEMGSGVLDTAQRVAEVIGNALKPGIETALPIVQQAGEEALKIASPAISEASKKAQEALQSSGVDTEPVITAAKTVADAAQQTTKVIEVAKPIASSTVETISSSDPTVIAGTAGALFVAYLLIPPIGSVILSNLRGYKGDLTPAQALDLISTQNYVLIDIRSEKDKDRAGIPRLPSNAKNRMAAIPLEELQSKLRGQVKNVKKLEAEIVALKISYLKKINKGTNVVILDSYSDVAKTVGRTLTSLGFKNTWIVADGFSGNKGWLQSRLGTDSYNFSFAEVLSPSRVIPAAVRSFGTTSQSSTKLLPGAD*

>Glyma.05g016000.2.p sequence-type=predicted peptide transcript=Glyma.05g016000.2 locus=Glyma.05g016000 ID=Glyma.05g016000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEITAMASSATPPRPSLPTPSTSPHTVVTTTFSKPQLRRSHIALPTSTTISLLALFAPPNEAKAAVSIAKDQIVSSLTQVQEMGSGVLDTAQRVAEVIGNALKPGIETALPIVQQAGEEALKIASPAISEASKKAQEALQSSGVDTEPVITAAKTVADAAQQTTKVIEVAKPIASSTVETISSSDPTVIAGTAGALFVAYLLIPPIGSVILSNLRGYKGDLTPAQALDLISTQNYVLIDIRSEKDKDRAGIPRLPSNAKNRMAAIPLEELQSKLRGQVKNVKKLEAEIVALKISYLKKINKGTNVVILDSYSDVAKTVGRTLTSLGFKNTWIVADGFSGNKGWLQSRLGTDSYNFSFAEVLSPSRVIPAAVRSFGTTSQSSTKLLPGAD*

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