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Report for Sequence Feature Glyma.05g013300

Feature Type:gene_model
Chromosome:Gm05
Start:1241512
stop:1244692
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g013300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G18550.2AT TCP family transcription factor JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
PF03634PFAM TCP family transcription factor JGI N/AIEA

Proteins Associated with Glyma.05g013300
LocusGene SymbolProtein Name
TCP47 Teosinte branched1 and cycloidea and proliferating cell factor family protein gene 47

Expression Patterns of Glyma.05g013300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g013300 not represented in the dataset
Glyma.05g013300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g013300
ParalogEvidenceComments
Glyma.17g121500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g013300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g07943 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g013300
>Glyma.05g013300.2 sequence-type=transcript locus=Glyma.05g013300 ID=Glyma.05g013300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGATatcgatagatagatagatgataattgatagatgcatacattgaCATCTACCGCAAAAACCACAACTTCAACTCAAGAAGAGAGAGAGAGAGAGTTTGTGTTTGTGAGAGTGAGACTGAGAGCGATAGCGCATCTCTTTTTGGAGAAAGTGACGTTCAACCCCAGTCAAAGGGAGCATTGGCTACCATTGCAAAGCTCGTTGGATGGAAAATAATTGGAACAGGCAAAACAAAAATGAACGGATGGAAAGGGATGGAATTAATAGCTTCTCTTTCTTTTTCAATAGGAAGATAGAGCTAGCAAACATGTCGTTCTCAGGCATTGAAAGTCCCAACCAATAACCAGTGTTCCATATTCTTGAAGGGGTAGGGTTATTTTTGGTGCAGTCCCAAGCTTAATATTAAAAATTCATTCCAGATATGTATTCCTCAAATACCTCCCTCAACGGCAATGAACTAATCTCGTACCCTAACCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACTAATTCTTCAAAAGAAGAAACCAATTCGAATTACGCCCTtcctcttcctcctcctcctcctcTTTTGTCCTTTTTCCAATCTCCCTTTGACGAAAATATCTTCCAGGAACACCACCATGACTTCCTCCTACTTCACCACTCTCTAGCTGACTCTGGAGTACTCACCAAAAACCTTGACGTTGCGGCCGAAATCTCGCCAATTCCTTGCCCTGGAGAAGGCTCAATTGCGATGGAGCACACTCCAAGAAAGAGATCCAGCAAGAGAGATCGCCACAGCAAGATCAACACCGCACGGGGCCTCAGAGATCGAAGAATGAGGTTGTCCCTCGAAGTCGCGAAGCGGTTTTTTGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTGGATTGGTTACTAAACCAAGCAAAGGGTGAAATCAAACAACTTGGAAGGGAAAAAACAAGTGTTGGTGGTGCGAAGAGTGCATCATCAACTTCGGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGTAGTGAGTGGAGGAGTTAACGAGGAGCAAGAGAGGGAGACAGTACCAAACATGAAGAGAAGAACAAACAAGGTTTGTAGAAAGAGTGCATTCAATCCTATTGATAAGGAATCgagggaaaaggcaagagaaagggcaagagaaagaacaagagagaagatgagaaCTCGGAGAGTACTTGCTGATGCATCAAACCTGAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGGTACTACTCATCAAAGCCAAAGCGTGAACCATCCCTCCTTGGATGTGCACCTTCCTGAGGCTGATCAAGAACCAAGTTCTCACAACGCGAAGGAGCATTGGGGAGAGAACATGGCGCATGAAGATAATTCTTTGGCGATCATGAACAAGTGGAGCCCAACTATGATGTTCAATTCTCTTCACAACTCAGGAGTCCTTCAGGAACATCAATTTGCAGAATTTCAGTCCTTGGGCAAACCTTGGGAAGCCTACAGCAATCACATCTAATATTGTGCTCATCATCGATTGCACCCATCATGTTTTTGTGTCAGTAGAATAAAAATACAATTAATCATGCTGTGTATTTCTTTAATTTCCTTTTGGCATGTAATGGGGTAAGGTATCTTCCGTTTACTAGCATATGGGAAATAATATTTCGTGAATGCTTT

>Glyma.05g013300.3 sequence-type=transcript locus=Glyma.05g013300 ID=Glyma.05g013300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ctactctccctctccttcacttcaccctctcaTAATTCAACTCTCATGCTTACAAGGCAAAACAAAAATGAACGGATGGAAAGGGATGGAATTAATAGCTTCTCTTTCTTTTTCAATAGGAAGATAGAGCTAGCAAACATGTCGTTCTCAGGCATTGAAAGTCCCAACCAATAACCAGTGTTCCATATTCTTGAAGGGGTAGGGTTATTTTTGGTGCAGTCCCAAGCTTAATATTAAAAATTCATTCCAGATATGTATTCCTCAAATACCTCCCTCAACGGCAATGAACTAATCTCGTACCCTAACCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACTAATTCTTCAAAAGAAGAAACCAATTCGAATTACGCCCTtcctcttcctcctcctcctcctcTTTTGTCCTTTTTCCAATCTCCCTTTGACGAAAATATCTTCCAGGAACACCACCATGACTTCCTCCTACTTCACCACTCTCTAGCTGACTCTGGAGTACTCACCAAAAACCTTGACGTTGCGGCCGAAATCTCGCCAATTCCTTGCCCTGGAGAAGGCTCAATTGCGATGGAGCACACTCCAAGAAAGAGATCCAGCAAGAGAGATCGCCACAGCAAGATCAACACCGCACGGGGCCTCAGAGATCGAAGAATGAGGTTGTCCCTCGAAGTCGCGAAGCGGTTTTTTGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTGGATTGGTTACTAAACCAAGCAAAGGGTGAAATCAAACAACTTGGAAGGGAAAAAACAAGTGTTGGTGGTGCGAAGAGTGCATCATCAACTTCGGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGTAGTGAGTGGAGGAGTTAACGAGGAGCAAGAGAGGGAGACAGTACCAAACATGAAGAGAAGAACAAACAAGGTTTGTAGAAAGAGTGCATTCAATCCTATTGATAAGGAATCgagggaaaaggcaagagaaagggcaagagaaagaacaagagagaagatgagaaCTCGGAGAGTACTTGCTGATGCATCAAACCTGAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGGTACTACTCATCAAAGCCAAAGCGTGAACCATCCCTCCTTGGATGTGCACCTTCCTGAGGCTGATCAAGAACCAAGTTCTCACAACGCGAAGGAGCATTGGGGAGAGAACATGGCGCATGAAGATAATTCTTTGGCGATCATGAACAAGTGGAGCCCAACTATGATGTTCAATTCTCTTCACAACTCAGGAGTCCTTCAGGAACATCAATTTGCAGAATTTCAGTCCTTGGGCAAACCTTGGGAAGCCTACAGCAATCACATCTAATATTGTGCTCATCATCGATTGCACCCATCATGTTTTTGTGTCAGTAGAATAAAAATACAATTAATCATGCTGTGTATTTCTTTAATTTCCTTTTGGCATGTAATGGGGTAAGGTATCTTCCGTTTACTAGCATATGGGAAATAATATTTCGTGAATGCTTT
Coding sequences of Glyma.05g013300
>Glyma.05g013300.1 sequence-type=CDS polypeptide=Glyma.05g013300.1.p locus=Glyma.05g013300 ID=Glyma.05g013300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATTCCTCAAATACCTCCCTCAACGGCAATGAACTAATCTCGTACCCTAACCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACTAATTCTTCAAAAGAAGAAACCAATTCGAATTACGCCCTTCCTCTTCCTCCTCCTCCTCCTCTTTTGTCCTTTTTCCAATCTCCCTTTGACGAAAATATCTTCCAGGAACACCACCATGACTTCCTCCTACTTCACCACTCTCTAGCTGACTCTGGAGTACTCACCAAAAACCTTGACGTTGCGGCCGAAATCTCGCCAATTCCTTGCCCTGGAGAAGGCTCAATTGCGATGGAGCACACTCCAAGAAAGAGATCCAGCAAGAGAGATCGCCACAGCAAGATCAACACCGCACGGGGCCTCAGAGATCGAAGAATGAGGTTGTCCCTCGAAGTCGCGAAGCGGTTTTTTGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTGGATTGGTTACTAAACCAAGCAAAGGGTGAAATCAAACAACTTGGAAGGGAAAAAACAAGTGTTGGTGGTGCGAAGAGTGCATCATCAACTTCGGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGTAGTGAGTGGAGGAGTTAACGAGGAGCAAGAGAGGGAGACAGTACCAAACATGAAGAGAAGAACAAACAAGGTTTGTAGAAAGAGTGCATTCAATCCTATTGATAAGGAATCGAGGGAAAAGGCAAGAGAAAGGGCAAGAGAAAGAACAAGAGAGAAGATGAGAACTCGGAGAGTACTTGCTGATGCATCAAACCTGAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGGTACTACTCATCAAAGCCAAAGCGTGAACCATCCCTCCTTGGATGTGCACCTTCCTGAGGCTGATCAAGAACCAAGTTCTCACAACGCGAAGGAGCATTGGGGAGAGAACATGGCGCATGAAGATAATTCTTTGGCGATCATGAACAAGTGGAGCCCAACTATGATGTTCAATTCTCTTCACAACTCAGGAGTCCTTCAGGAACATCAATTTGCAGAATTTCAGTCCTTGGGCAAACCTTGGGAAGCCTACAGCAATCACATCTAA

>Glyma.05g013300.2 sequence-type=CDS polypeptide=Glyma.05g013300.2.p locus=Glyma.05g013300 ID=Glyma.05g013300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATTCCTCAAATACCTCCCTCAACGGCAATGAACTAATCTCGTACCCTAACCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACTAATTCTTCAAAAGAAGAAACCAATTCGAATTACGCCCTTCCTCTTCCTCCTCCTCCTCCTCTTTTGTCCTTTTTCCAATCTCCCTTTGACGAAAATATCTTCCAGGAACACCACCATGACTTCCTCCTACTTCACCACTCTCTAGCTGACTCTGGAGTACTCACCAAAAACCTTGACGTTGCGGCCGAAATCTCGCCAATTCCTTGCCCTGGAGAAGGCTCAATTGCGATGGAGCACACTCCAAGAAAGAGATCCAGCAAGAGAGATCGCCACAGCAAGATCAACACCGCACGGGGCCTCAGAGATCGAAGAATGAGGTTGTCCCTCGAAGTCGCGAAGCGGTTTTTTGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTGGATTGGTTACTAAACCAAGCAAAGGGTGAAATCAAACAACTTGGAAGGGAAAAAACAAGTGTTGGTGGTGCGAAGAGTGCATCATCAACTTCGGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGTAGTGAGTGGAGGAGTTAACGAGGAGCAAGAGAGGGAGACAGTACCAAACATGAAGAGAAGAACAAACAAGGTTTGTAGAAAGAGTGCATTCAATCCTATTGATAAGGAATCGAGGGAAAAGGCAAGAGAAAGGGCAAGAGAAAGAACAAGAGAGAAGATGAGAACTCGGAGAGTACTTGCTGATGCATCAAACCTGAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGGTACTACTCATCAAAGCCAAAGCGTGAACCATCCCTCCTTGGATGTGCACCTTCCTGAGGCTGATCAAGAACCAAGTTCTCACAACGCGAAGGAGCATTGGGGAGAGAACATGGCGCATGAAGATAATTCTTTGGCGATCATGAACAAGTGGAGCCCAACTATGATGTTCAATTCTCTTCACAACTCAGGAGTCCTTCAGGAACATCAATTTGCAGAATTTCAGTCCTTGGGCAAACCTTGGGAAGCCTACAGCAATCACATCTAA

>Glyma.05g013300.3 sequence-type=CDS polypeptide=Glyma.05g013300.3.p locus=Glyma.05g013300 ID=Glyma.05g013300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATTCCTCAAATACCTCCCTCAACGGCAATGAACTAATCTCGTACCCTAACCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACTAATTCTTCAAAAGAAGAAACCAATTCGAATTACGCCCTTCCTCTTCCTCCTCCTCCTCCTCTTTTGTCCTTTTTCCAATCTCCCTTTGACGAAAATATCTTCCAGGAACACCACCATGACTTCCTCCTACTTCACCACTCTCTAGCTGACTCTGGAGTACTCACCAAAAACCTTGACGTTGCGGCCGAAATCTCGCCAATTCCTTGCCCTGGAGAAGGCTCAATTGCGATGGAGCACACTCCAAGAAAGAGATCCAGCAAGAGAGATCGCCACAGCAAGATCAACACCGCACGGGGCCTCAGAGATCGAAGAATGAGGTTGTCCCTCGAAGTCGCGAAGCGGTTTTTTGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTGGATTGGTTACTAAACCAAGCAAAGGGTGAAATCAAACAACTTGGAAGGGAAAAAACAAGTGTTGGTGGTGCGAAGAGTGCATCATCAACTTCGGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGTAGTGAGTGGAGGAGTTAACGAGGAGCAAGAGAGGGAGACAGTACCAAACATGAAGAGAAGAACAAACAAGGTTTGTAGAAAGAGTGCATTCAATCCTATTGATAAGGAATCGAGGGAAAAGGCAAGAGAAAGGGCAAGAGAAAGAACAAGAGAGAAGATGAGAACTCGGAGAGTACTTGCTGATGCATCAAACCTGAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGGTACTACTCATCAAAGCCAAAGCGTGAACCATCCCTCCTTGGATGTGCACCTTCCTGAGGCTGATCAAGAACCAAGTTCTCACAACGCGAAGGAGCATTGGGGAGAGAACATGGCGCATGAAGATAATTCTTTGGCGATCATGAACAAGTGGAGCCCAACTATGATGTTCAATTCTCTTCACAACTCAGGAGTCCTTCAGGAACATCAATTTGCAGAATTTCAGTCCTTGGGCAAACCTTGGGAAGCCTACAGCAATCACATCTAA
Predicted protein sequences of Glyma.05g013300
>Glyma.05g013300.1.p sequence-type=predicted peptide transcript=Glyma.05g013300.1 locus=Glyma.05g013300 ID=Glyma.05g013300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYSSNTSLNGNELISYPNQPFCFRPFSFESNPTNSSKEETNSNYALPLPPPPPLLSFFQSPFDENIFQEHHHDFLLLHHSLADSGVLTKNLDVAAEISPIPCPGEGSIAMEHTPRKRSSKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKGEIKQLGREKTSVGGAKSASSTSECEGVSSLDEVVVSGGVNEEQERETVPNMKRRTNKVCRKSAFNPIDKESREKARERARERTREKMRTRRVLADASNLNRLSSWNPFETVEDSAGTTHQSQSVNHPSLDVHLPEADQEPSSHNAKEHWGENMAHEDNSLAIMNKWSPTMMFNSLHNSGVLQEHQFAEFQSLGKPWEAYSNHI*

>Glyma.05g013300.2.p sequence-type=predicted peptide transcript=Glyma.05g013300.2 locus=Glyma.05g013300 ID=Glyma.05g013300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYSSNTSLNGNELISYPNQPFCFRPFSFESNPTNSSKEETNSNYALPLPPPPPLLSFFQSPFDENIFQEHHHDFLLLHHSLADSGVLTKNLDVAAEISPIPCPGEGSIAMEHTPRKRSSKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKGEIKQLGREKTSVGGAKSASSTSECEGVSSLDEVVVSGGVNEEQERETVPNMKRRTNKVCRKSAFNPIDKESREKARERARERTREKMRTRRVLADASNLNRLSSWNPFETVEDSAGTTHQSQSVNHPSLDVHLPEADQEPSSHNAKEHWGENMAHEDNSLAIMNKWSPTMMFNSLHNSGVLQEHQFAEFQSLGKPWEAYSNHI*

>Glyma.05g013300.3.p sequence-type=predicted peptide transcript=Glyma.05g013300.3 locus=Glyma.05g013300 ID=Glyma.05g013300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYSSNTSLNGNELISYPNQPFCFRPFSFESNPTNSSKEETNSNYALPLPPPPPLLSFFQSPFDENIFQEHHHDFLLLHHSLADSGVLTKNLDVAAEISPIPCPGEGSIAMEHTPRKRSSKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKGEIKQLGREKTSVGGAKSASSTSECEGVSSLDEVVVSGGVNEEQERETVPNMKRRTNKVCRKSAFNPIDKESREKARERARERTREKMRTRRVLADASNLNRLSSWNPFETVEDSAGTTHQSQSVNHPSLDVHLPEADQEPSSHNAKEHWGENMAHEDNSLAIMNKWSPTMMFNSLHNSGVLQEHQFAEFQSLGKPWEAYSNHI*






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