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Report for Sequence Feature Glyma.05g013200

Feature Type:gene_model
Chromosome:Gm05
Start:1218838
stop:1227836
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g013200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G18470.1AT Transmembrane Fragile-X-F-associated protein JGI N/AIEA
GO:0009966GO-bp regulation of signal transduction EnsemblGenomesN/AIEA
GO:0016567GO-bp protein ubiquitination EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0004842GO-mf ubiquitin-protein transferase activity EnsemblGenomesN/AIEA
KOG4172 KOG Predicted E3 ubiquitin ligase JGI N/AIEA
PTHR10044Panther INHIBITOR OF APOPTOSIS JGI N/AIEA
PTHR10044:SF7Panther JGI N/AIEA
PF10269PFAM Transmembrane Fragile-X-F protein JGI N/AIEA

Expression Patterns of Glyma.05g013200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g013200
ParalogEvidenceComments
Glyma.17g121200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g013200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g07960 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g013200
>Glyma.05g013200.1 sequence-type=CDS polypeptide=Glyma.05g013200.1.p locus=Glyma.05g013200 ID=Glyma.05g013200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCTGGCGCAGGGTATTGAATTCAGCACAGGCCTTGGCTGCACACACTTTCCTTTTGTGCTTCACTCTCTTCCTCGTTCTCAAGCTCGATCACAATCTCTCTTCTTCTTGGTGGGTAATATTTTTACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAGGTTTTCATTACCTGCGCCATCTGCTCCACGTAATCGAAATTGGGCTCCATGCCATGCCGTTGTTGCAACACCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATATGATCGTGGCTATGCTGCAGTTGGTCTAAAGATAGTGTTTCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGGATGTGTAAGGCTCTAATGCCAGGGGATGGAGAAAACATGAGTGATGAGGCTATATGGGAAACTCTTCCTCATTTTTGGGTTGCTATCTCTATGGTGTTCTTCGTTGCTGCTACAGTCTTCACACTCCTAAAGCTTAGTGGTGATGTAGGTGCTCTGGGCTGGTGGGACTTGTTTATTAATTTTATTATTGCCGAGTGCTTTGCTTTCCTTGTATGTACAAAGTGGTCCAATCCCGTCATTCATAGAAATTCAAGAGAAGCTAGTAGTTCATCTTCAACTACGATTGGATATCTTGACTGGAACAGTGGTTTAGTGGTTTCTACAGACGAAAATCAACCCCAGGGGAGAATCTGTAGCCTTCAAGACATAGGAGGTCATTTCATGAAAATACCAATTATTGTATTCCAGGTTCTTCTTTGTATGCATCTAGAGGGAACACCTGCTTGTGCTGTATATATACCGCTTCCAGTTATTTTCTCTCCCCTTTTCCTACTGCAAGGAGCTGGTGTACTGTTATCTGCATCTAAATTAGGGGAGAAGCTTGTGCTTCTGCTACGAAGTGGAGCTGGTGGAGGAATATATTTTAGATTTTCTTCAAGAGCTCATGATTGCTTGGGGTTCTTGTGCCATGGTTCTAGATTATTAGGTTGGTGGTCAATTGATGAAGGGAGTCGGGAAGAACATGCACGACTATACCATGAGGGAGCAATTGGGTATAATACATTTAGTGGTTATCCTCCTGAGATCGTTAAGAAAATGCCAAAAAAAGAACTTGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTTGGTGAACAAACAGAAATTACAAAATTCAGCCAACAGGAGTATGAAAGACTTCAAAATGAGAAAGTGTTATGCAGAATTTGTTTTGAGGGAGAGATTAACGTTGTATTGCTCCCATGTAGGCATCGTGTCCTTTGCAGCACTTGCTCACAGAAGCGTAAGAAGTGCCCTATTTGCCGTGATTCTATTGCTGAGCGTCTGCCTGTATATGATGTTTAG
Predicted protein sequences of Glyma.05g013200
>Glyma.05g013200.1.p sequence-type=predicted peptide transcript=Glyma.05g013200.1 locus=Glyma.05g013200 ID=Glyma.05g013200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSWRRVLNSAQALAAHTFLLCFTLFLVLKLDHNLSSSWWVIFLPLWMFHGVVARGRFSLPAPSAPRNRNWAPCHAVVATPLLIAFELLLCIYLESLYDRGYAAVGLKIVFLPLLTFEIIILIDNFRMCKALMPGDGENMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLSGDVGALGWWDLFINFIIAECFAFLVCTKWSNPVIHRNSREASSSSSTTIGYLDWNSGLVVSTDENQPQGRICSLQDIGGHFMKIPIIVFQVLLCMHLEGTPACAVYIPLPVIFSPLFLLQGAGVLLSASKLGEKLVLLLRSGAGGGIYFRFSSRAHDCLGFLCHGSRLLGWWSIDEGSREEHARLYHEGAIGYNTFSGYPPEIVKKMPKKELAEEVWRLQAALGEQTEITKFSQQEYERLQNEKVLCRICFEGEINVVLLPCRHRVLCSTCSQKRKKCPICRDSIAERLPVYDV*






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