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Report for Sequence Feature Glyma.05g012700

Feature Type:gene_model
Chromosome:Gm05
Start:1188556
stop:1193182
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g012700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G56120.1AT S-adenosyl-L-methionine-dependent methyltransferases superfamily protein JGI N/AIEA
GO:0008033GO-bp tRNA processing EnsemblGenomesN/AIEA
GO:0030488GO-bp tRNA methylation EnsemblGenomesN/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0005759GO-cc mitochondrial matrix EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0009019GO-mf tRNA (guanine-N1-)-methyltransferase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity JGI N/AIEA
GO:0052906GO-mf tRNA (guanine(37)-N(1))-methyltransferase activity EnsemblGenomesN/AIEA
KOG2078 KOG tRNA modification enzyme JGI N/AIEA
PTHR23245Panther UNCHARACTERIZED JGI N/AIEA
PF02475PFAM Met-10+ like-protein JGI N/AIEA

Expression Patterns of Glyma.05g012700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g012700 not represented in the dataset
Glyma.05g012700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g012700
ParalogEvidenceComments
Glyma.17g120800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g012700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g08011 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g012700
>Glyma.05g012700.1 sequence-type=CDS polypeptide=Glyma.05g012700.1.p locus=Glyma.05g012700 ID=Glyma.05g012700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGGACGAGAGCAAGTTCGAGGTACACTTCAAACTGTGGGCCCTTCGAATCCCTTGCCAACATTGCAAGCTCGCCACGCGAATCCTCAACGGTTACTTGCTTGACAAGCCCCGAGTTAAACCCATCACCGAGGACCCAACCTGTGACAAAAACCGTTACCTTATACTCTCCGACAATGTTCACAATCAAGAAGAATATCTTTCTTTCAGCGGAAATTCTTATTTTTTACTTGATTTGAATTGGTGGTTGAGGGCAGATTTATCTGATATTCCAAAACAAAAGCTAGATGAGCTCAAGGGCTTGTGTGAGATTGAAGTTGTGCCCTATTCTTTGACTTTAGGGTATTCTTACTGGAGTGCAGATCATGTGCTGAAGCAGATACTGCCTACTGGAGTGGAGCTTCTAACTGCAATCCAAACAGCCACTGATGGTCAAATTGCCCATTTAAACCTACATGATGAGTTACTTCCCCACAAAGATGTTATTGCAAAGGTTATTTATGATAAAAATTATCCAAGAATCAAAACTATTGTTAATAAAGTTGGAACCATTACAAATGAATTTCGTGTGCCAGAGTTTGAAATTTTAGCAGGAGAGCATAATATGATTACAGAAGTGAAGCAATATGGTGCCACTTTTAGGCTTGATTACAGCTTGGTTTATTGGAATTCGAGATTGGAACATGAACACAAAAGGTTAGTCTCAATGTTCCAAGCTGGAGAGACCATTTGTGACATGTTTGCTGGTATTGGTCCTTTTGCCATTCCTGCAGCACAGAAAGGATGCATAGTCTATGCAAATGATTTAAATCCTGATAGCATTCACTATCTGAGGATTAATGCCAAAATCAATAAGGTTGGTGATTGCATTTATGCATACAACATGGATGCTAGAAAATTCATCTCCCAGATGATGGAAGTGCCAAATACTGAGGTCACATTAGAAAACTCACATGAAGTCCCTATTTTGGATACACGAGACAATGCTGAATCAAATTCTAAAAATGAGTTGCTAACTGGGAATGGAGAGGCTCATGGAACTGACATCCTTGAAGGTGGTAGGAGAAAAGGAAGCGCAAACAAAAGAATGAGAGGCTCTGAAATCTCTGTCACAAAAACTTGGGAACATGTTGATCATGTAATAATGAACCTACCTGCATCTGCTGTTCAGTTTCTAGATGCATTCAGGGGATTAATCCAGAAGAAATATTGGAAAGGATGTCTACCATGGATTCACTGCTATTGCTTCATTAGGGCAACTGAAACTCCTGAGACTATAATAGCTGTAGCAGAATCTGCTTTAGACGCTCATATACAAGACTCAAGATTTCATAGGGTTAGGGATGTGGCTCCAAACAAGGCAATGTTTTGTTTAAGCTTCAGGTTGCCAGAAGCATGCCTTAAAGAAGATTGTCCATAA
Predicted protein sequences of Glyma.05g012700
>Glyma.05g012700.1.p sequence-type=predicted peptide transcript=Glyma.05g012700.1 locus=Glyma.05g012700 ID=Glyma.05g012700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLDESKFEVHFKLWALRIPCQHCKLATRILNGYLLDKPRVKPITEDPTCDKNRYLILSDNVHNQEEYLSFSGNSYFLLDLNWWLRADLSDIPKQKLDELKGLCEIEVVPYSLTLGYSYWSADHVLKQILPTGVELLTAIQTATDGQIAHLNLHDELLPHKDVIAKVIYDKNYPRIKTIVNKVGTITNEFRVPEFEILAGEHNMITEVKQYGATFRLDYSLVYWNSRLEHEHKRLVSMFQAGETICDMFAGIGPFAIPAAQKGCIVYANDLNPDSIHYLRINAKINKVGDCIYAYNMDARKFISQMMEVPNTEVTLENSHEVPILDTRDNAESNSKNELLTGNGEAHGTDILEGGRRKGSANKRMRGSEISVTKTWEHVDHVIMNLPASAVQFLDAFRGLIQKKYWKGCLPWIHCYCFIRATETPETIIAVAESALDAHIQDSRFHRVRDVAPNKAMFCLSFRLPEACLKEDCP*






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