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Report for Sequence Feature Glyma.05g009700

Feature Type:gene_model
Chromosome:Gm05
Start:839823
stop:846541
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g009700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20170.1AT RNA polymerase II transcription mediators JGI N/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0006357GO-bp regulation of transcription from RNA polymerase II promoter JGI N/AIEA
GO:0016592GO-cc mediator complex EnsemblGenomesN/AIEA
GO:0016592GO-cc mediator complex JGI N/AIEA
GO:0003712GO-mf transcription cofactor activity EnsemblGenomesN/AIEA
PF10156PFAM Subunit 17 of Mediator complex JGI N/AIEA

Proteins Associated with Glyma.05g009700
LocusGene SymbolProtein Name
MED17-1 Mediator Complex 17 gene 1

Expression Patterns of Glyma.05g009700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g009700
ParalogEvidenceComments
Glyma.17g117600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g009700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g08320 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g009700
>Glyma.05g009700.1 sequence-type=CDS polypeptide=Glyma.05g009700.1.p locus=Glyma.05g009700 ID=Glyma.05g009700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGATGGCATGCAATTGCAAATCTCCCTTGACAAGCTACCAATCAAGCGCTTGGATTCCATTGAAGAAAATGGAATTGAACGATTCCCACCAGATGTGGATTACGATGAGAAGCGGCTCTCCCTAATTAGGCGAATTGACTTCGCTTGGGCTGTTGAGAAGGATGAGGAGAAGAAGAAGAAGCAGAAGAGCTCAAAGGAGACCTCAACGCCATGGCAATGGCAGGGCATGGTAGAAAATTTGCAGTTGGCTCATCAGGAGCTCTCTGTCATCATAGATCTCATTAACACTGTTGAAGCAAATGATGCAGTAACAGTGGCTAGCATGACAAGACCAAAACTATTACCAAATGAAGCTTTGTCTGACCTGGCTGTATCTGCAGCCACCAAGCTGCAATGTTACCGCCATGTTGGGAAATATTTCAAGCAATCTGCCAAGGCTTTTGAACAACAGGTTGCTCGGGAAGCTAGGTTTTATGGTGCCCTTATCAGGTTGCAGCAAAATTGGAAGGTTAAACGGCAACGTCAGGCAGCTATTGTTCCAGGGAATGAAGGCTTCACCTTTGATCTCTTTGATAACTCATATGACCAAGCAGCTATTATTCGCTCATTGTCTATGTCCACTGTTCGAGTTAATCATGATGCAGCTGGAAATCTGGCAATAAATGTGTCTCCGGATTTATGCCATTCTCTCCAATTTGGTTTCGTTGGTGCACAATCAGATGATACAAGGAGGAAATCCAATCAAAACAAATCCCACTTTTCAGGTGAGCTTAATTTGGGAAAAACAGGTGAAGAGTCCTTAAGTGATGAAGAGTGTGTTAAGAAAACACATTCACTCCTTCGTGAAGTACATGAAGCAATTTTCAATGAACAGGTGTTTGATCTGGTGAATCGAGAAGCATTTAACACAGTTGCAGGTGTCAGTGTGACTGGAATACGGGAAAATTATTTACAATTAAGCTTAGGTCAAGAAACCTCTGTGTACTTAACACTAGTGTCCAATAGTCAAGATCATTCTACAGTTGAAGGTGAACTCACCGATAACGCAGAAAATGCAATTTTACCTCTGGAATCATCTGATGGAATGAAGCGTGAAGCCAAACAGAACACCTCTAACAAAGGGCAGTTTTCTAATTCCATCTGCTATGAGATTTATATTCAACAGATTTTTCATGAATATATATTTGGAAAAGGTGGTGATAAACCAAGTTCCTCTGGAAATCGTTTGTCTGGCATACAGGCAAAGGATGGATCCAGTCTTCTTGGTCATTTTTTTAAATCTTTAGCTCACAGGATATTTTCAACTAAAGTTCTTGCAGAGCTGGAAAACGTGGTATGCAAGGTCCCGTATATACAGCTAATTTCTAATCCCACATGGCATTCTCGGGCTTCGTCATGGACACTCTACATGGAGGTTCCTCAATCTATTCTTCGTGGTAGCCAAACCAAAACATCAGATTATTATGAGAAAAATGCTGTCAAGCGTCAGTTTTGGACTAAGGTGGTGGTAAATGATGATTGCATCAACGTTAAAGCTGAAGGTTCTCCAAATGTCGCTGGCCTGTTCAAGGGAAAGATTGAGGAAACCCATTCAATAAACAAATATAACTGCAACTTAGCTGATCTTCCTGTGATTATTCTGCAGCAGGTTGCGAGCCAAATTATTAATTGGCTCTATCAGGAAGCTATGATGGTTGGGATAAAAGCAAATCGAGACTTCTTATGCCTATCTTTGGAGCTGGAGCAGGGTGAAACACTTGGCCTGGTTGCAAGTGTTGATCCAGAAGATAGTGAAGGGTGTATATCTTGGTGGTTGGTCATGGAGGACAGTTTTGCAGAGGAGCAAAAGCTTCATATGAGCATCACGGATGGTGCATCCGAATATAGGAAATTCCTAGGTCACTTGTCTCTTGATTTGTTATACGCAACACTGATCGACTTGGTTAGCTTGTGCAGTGGTGGAGGCAGCCAATGA
Predicted protein sequences of Glyma.05g009700
>Glyma.05g009700.1.p sequence-type=predicted peptide transcript=Glyma.05g009700.1 locus=Glyma.05g009700 ID=Glyma.05g009700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDDGMQLQISLDKLPIKRLDSIEENGIERFPPDVDYDEKRLSLIRRIDFAWAVEKDEEKKKKQKSSKETSTPWQWQGMVENLQLAHQELSVIIDLINTVEANDAVTVASMTRPKLLPNEALSDLAVSAATKLQCYRHVGKYFKQSAKAFEQQVAREARFYGALIRLQQNWKVKRQRQAAIVPGNEGFTFDLFDNSYDQAAIIRSLSMSTVRVNHDAAGNLAINVSPDLCHSLQFGFVGAQSDDTRRKSNQNKSHFSGELNLGKTGEESLSDEECVKKTHSLLREVHEAIFNEQVFDLVNREAFNTVAGVSVTGIRENYLQLSLGQETSVYLTLVSNSQDHSTVEGELTDNAENAILPLESSDGMKREAKQNTSNKGQFSNSICYEIYIQQIFHEYIFGKGGDKPSSSGNRLSGIQAKDGSSLLGHFFKSLAHRIFSTKVLAELENVVCKVPYIQLISNPTWHSRASSWTLYMEVPQSILRGSQTKTSDYYEKNAVKRQFWTKVVVNDDCINVKAEGSPNVAGLFKGKIEETHSINKYNCNLADLPVIILQQVASQIINWLYQEAMMVGIKANRDFLCLSLELEQGETLGLVASVDPEDSEGCISWWLVMEDSFAEEQKLHMSITDGASEYRKFLGHLSLDLLYATLIDLVSLCSGGGSQ*






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