Glyma.05g008300

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Report for Sequence Feature Glyma.05g008300

Feature Type:	gene_model
Chromosome:	Gm05
Start:	765248
stop:	768778
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05g008300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G20070.1	AT	nudix hydrolase homolog 19	JGI	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	EnsemblGenomes	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
GO:0046872	GO-mf	metal ion binding	JGI	N/A	IEA
KOG3084	KOG	NADH pyrophosphatase I of the Nudix family of hydrolases	JGI	N/A	IEA
PTHR22769	Panther	MUTT/NUDIX HYDROLASE	JGI	N/A	IEA
PF00293	PFAM	NUDIX domain	JGI	N/A	IEA
PF09297	PFAM	NADH pyrophosphatase zinc ribbon domain	JGI	N/A	IEA
PWY-5381	SoyCyc9	pyridine nucleotide cycling (plants)	Plant Metabolic Network		ISS
GN7V-56122	SoyCyc9-rxn	NADH pyrophosphatase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.05g008300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g008300 not represented in the dataset	Glyma.05g008300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.05g008300

Paralog	Evidence	Comments
Glyma.17g116600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g008300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma05g08460	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.05g008300

Limit To All Plant Sequences

>Glyma.05g008300.1 sequence-type=CDS polypeptide=Glyma.05g008300.1.p locus=Glyma.05g008300 ID=Glyma.05g008300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCCTAAGCCTTCACTCTCACGCATTCTCCGGCAACCCTCTGCTCTCCAAATTCCCACTTTCCGGCCACCCCCTTTCACCCTCTTCAGCTCTCGAAGCCCTCAAAGCGCAAATTGGCCTAAACAACACTCACTCTTCTCCCTCCCCGAGCTTCAAGGTGCTGCCTTTCAGAAATGGGAGGCCTTTGGCCTCTTCCGCGGCCGGGTCCGGCGACTCGCCGCCGATTTGGCATCTGGGTTGGCTCGGATTGGACGAAATAAGGGGTATATTCGAGAATTCAGGTGCCCAGTTGAGCGTGGACTCATTGGTGTATCTGAGTTCGAGTGCAGAGGACGACGCCGTTTACTGGGCAATCGATGTTTCTGATAAAGTACCTGAATTGGGTAGCAACAAGGAGAGGTTGTGTTTTGTGGATCTTCGAACGCTCATGGTGGCTACCGACTGTCCATTTTCTAACACGATCGATCCAAGTAGTTTGTGTTATATATATGGAGCATATCATGCTAAGGCACTGTTGGAATGGCATAATATTTCACGATTTTGTGGGCATTGTGGAGAGAAAACAGTCCCAATGGAAGCTGGGAGACGGAAGAAATGTTCAAATGATTCATGCAAGAAGAGGATATATCCACGTGTTGAGCCAAAAGAGCGTGTTCTATTGGCTAAACGACCAATGCATATAGCTCGCTTGTATACCTGCTTATCAGGTTTCACAGAGCCAGGAGAAAGCTTGGAAGAAGCTGTAAGAAGAGAAACATGGGAAGAGACTGGCATTGAAGTGGGAGAAGTTGTATACCACAGTTCTCAGCCATGGCCTGTTGCACCAAATAGCATTCCATGTCAGCTGATGGTTGGGTTCTTTGCATATGCAAAATCCCTTGAAATAACTGTGGACAAGACAGAGTTAGAAGATGCTCAGTGGTACAGTAGAGAAGATGTAAGAAAAGCATTGACCTTTGCTAAATACAAGCAAGCCCAAAGAACTGCAGCAGAAAAGGTCGAGCAAATGTGCAAGGGACTAGAAAAGAATCAAAGCTTGGCTTCAGATCTCAACGTGGAGAGTGCTGATGAACAACACGCTCCCATAGTTTTTCCTGGACCCTTTGCGATAGCCCATCACCTTATTTCTTCTTGGGTCTTCTCAGATCAAAAT

Predicted protein sequences of Glyma.05g008300

Limit To All Plant Sequences

>Glyma.05g008300.1.p sequence-type=predicted peptide transcript=Glyma.05g008300.1 locus=Glyma.05g008300 ID=Glyma.05g008300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFLSLHSHAFSGNPLLSKFPLSGHPLSPSSALEALKAQIGLNNTHSSPSPSFKVLPFRNGRPLASSAAGSGDSPPIWHLGWLGLDEIRGIFENSGAQLSVDSLVYLSSSAEDDAVYWAIDVSDKVPELGSNKERLCFVDLRTLMVATDCPFSNTIDPSSLCYIYGAYHAKALLEWHNISRFCGHCGEKTVPMEAGRRKKCSNDSCKKRIYPRVEPKERVLLAKRPMHIARLYTCLSGFTEPGESLEEAVRRETWEETGIEVGEVVYHSSQPWPVAPNSIPCQLMVGFFAYAKSLEITVDKTELEDAQWYSREDVRKALTFAKYKQAQRTAAEKVEQMCKGLEKNQSLASDLNVESADEQHAPIVFPGPFAIAHHLISSWVFSDQN

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