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Report for Sequence Feature Glyma.05g008200

Feature Type:gene_model
Chromosome:Gm05
Start:762752
stop:771040
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g008200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G15410.1AT aspartate-glutamate racemase family JGI N/AIEA
GO:0006520GO-bp cellular amino acid metabolic process EnsemblGenomesN/AIEA
GO:0006807GO-bp nitrogen compound metabolic process EnsemblGenomesN/AIEA
GO:0006807GO-bp nitrogen compound metabolic process JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0016855GO-mf racemase and epimerase activity, acting on amino acids and derivatives EnsemblGenomesN/AIEA
GO:0036361GO-mf racemase activity, acting on amino acids and derivatives EnsemblGenomesN/AIEA
GO:0036361GO-mf racemase activity, acting on amino acids and derivatives JGI N/AIEA
PF01177PFAM Asp/Glu/Hydantoin racemase JGI N/AIEA
GN7V-65296SoyCyc9-rxn aspartate racemase Plant Metabolic Network ISS

Expression Patterns of Glyma.05g008200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g008200
ParalogEvidenceComments
Glyma.17g116500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g008200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g08470 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g008200
>Glyma.05g008200.2 sequence-type=transcript locus=Glyma.05g008200 ID=Glyma.05g008200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACTGTGACAAAACTTTCATTGGCACTTGTCAACTTTTTATTGATGATGGTGATGATAAATACATGTTTGTAATTGAGAGGAGAAAAAAAATATCCTTTAGAAACTGGGTTGTTGTTATATTAGAGATGCTAGAAAGGGGCATATTGATGTCTATGCAGACACTGAATCACCCTCCATTTCTGACTGGAGATGCCTTTAGAAAGAGGACTCAGACTCGGTGCAGAGGGAGAGCAAATTCAACCACAGCTTTGCAGTTATCTTCTGATGAGAGTGGAAACTTTGCAGAACCAGGTACTTCCCTTATGAGATGTAAAAACTCTGGTTCCCTTCTAAGCCAACCAAACACTGTTGGTGTTATAGGAGGGGTATCACTTCTATCAACTCTGATTTTCTTGGAGAAACTTGCTTGTTGGGGTTCAAGAAATGGTAAAGAATGTCCACCTTTTGTTGTTTCCAGTGATCCTGAGTTGAGCAAAGTGCTTTCATTACGTGGTCCTCTTCCTTCTGCAAGGAGCAGATTTGATCGTATCAAATTGAATCAGGACCTTGTGATTGAGAATTTGCGGAGCAAAAGGAACTTTCTGCAGCAGTCTGGAGCTCGTGGTTTGGCCATGCCTTGCCATCTCTCACATGCGTGGCACAGTGAAATTTCTGAGGATAGTTCACTACCCTTTCTTCATGATGGTGATTGTGTTGCCATGGAACTCAAGAACGCCATGTTGAAGCCAATTCATGCTGCTGTTACTGTGGGGATTGGACTTCTGACTACAGATTCAAATTTTGTAGCTAGTTATTACCAGGAGAAGCTTCAAAGTCAGGGATTTGAAGTAGTGTTTCTAGACAAAGCAACCGAAGAACATGTATTGGTTCCTGCAATGGAGGCGTTGTACAGAAAGGACGTGGAAGGGGCAAGGAATTTATTGAGAATTGCAATCCATGTTCTTTTGGTTAGGGCAGTGAATGTGGTGCTTCTGGCATCTGATGATTTGCTGGGGGTTCTCCCTCACAATGATCCTCTTCTACGGAAATGCATAGACCCAATGGATGCTTTGGCCAGGTCAACTATACATTGGGCAGAAACAACGGCAGAGGTACACAAGAACATTTAGTATCCTATCTTCCAAAAGCATGGCATAATGGTTGGAGTATTTCTGTAAAGTAGAAAAGTATGGCTTCGTGTTGATAGAATTTCTCATTTGCTACAGCACCTTTCTTTGATAGATAGATAGAAGACTAAAAAGAGAAACTGCCGTGTAATTTGGTGTGGAATTAGTTTTACATTATTTGTGAGAATAACTTAGAGAGCTTGATAGTTGTAGCTTATCTGCAGTGCCATGTCTCTTGGTAGCTTCTTTGAAACTATTTGAGTTTTGATTTGCCATGAAATCACTCTATGTGGCCGAGGATGCCTATTCTATGTTTCTTAGATATATAGCAGGATAACACATTCTGAAATAAATTGTCATTCGGCAATCACGA
Coding sequences of Glyma.05g008200
>Glyma.05g008200.1 sequence-type=CDS polypeptide=Glyma.05g008200.1.p locus=Glyma.05g008200 ID=Glyma.05g008200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTGTAATTGAGAGGAGAAAAAAAATATCCTTTAGAAACTGGGTTGTTGTTATATTAGAGATGCTAGAAAGGGGCATATTGATGTCTATGCAGACACTGAATCACCCTCCATTTCTGACTGGAGATGCCTTTAGAAAGAGGACTCAGACTCGGTGCAGAGGGAGAGCAAATTCAACCACAGCTTTGCAGTTATCTTCTGATGAGAGTGGAAACTTTGCAGAACCAGGTACTTCCCTTATGAGATGTAAAAACTCTGGTTCCCTTCTAAGCCAACCAAACACTGTTGGTGTTATAGGAGGGGTATCACTTCTATCAACTCTGATTTTCTTGGAGAAACTTGCTTGTTGGGGTTCAAGAAATGGTAAAGAATGTCCACCTTTTGTTGTTTCCAGTGATCCTGAGTTGAGCAAAGTGCTTTCATTACGTGGTCCTCTTCCTTCTGCAAGGAGCAGATTTGATCGTATCAAATTGAATCAGGACCTTGTGATTGAGAATTTGCGGAGCAAAAGGAACTTTCTGCAGCAGTCTGGAGCTCGTGGTTTGGCCATGCCTTGCCATCTCTCACATGCGTGGCACAGTGAAATTTCTGAGGATAGTTCACTACCCTTTCTTCATGATGGTGATTGTGTTGCCATGGAACTCAAGAACGCCATGTTGAAGCCAATTCATGCTGCTGTTACTGTGGGGATTGGACTTCTGACTACAGATTCAAATTTTGTAGCTAGTTATTACCAGGAGAAGCTTCAAAGTCAGGGATTTGAAGTAGTGTTTCTAGACAAAGCAACCGAAGAACATGTATTGGTTCCTGCAATGGAGGCGTTGTACAGAAAGGACGTGGAAGGGGCAAGGAATTTATTGAGAATTGCAATCCATGTTCTTTTGGTTAGGGCAGTGAATGTGGTGCTTCTGGCATCTGATGATTTGCTGGGGGTTCTCCCTCACAATGATCCTCTTCTACGGAAATGCATAGACCCAATGGATGCTTTGGCCAGGTCAACTATACATTGGGCAGAAACAACGGCAGAGGGAAGAATGCAATTTCCTAATCCATCCAATTGGTGA

>Glyma.05g008200.2 sequence-type=CDS polypeptide=Glyma.05g008200.2.p locus=Glyma.05g008200 ID=Glyma.05g008200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTGTAATTGAGAGGAGAAAAAAAATATCCTTTAGAAACTGGGTTGTTGTTATATTAGAGATGCTAGAAAGGGGCATATTGATGTCTATGCAGACACTGAATCACCCTCCATTTCTGACTGGAGATGCCTTTAGAAAGAGGACTCAGACTCGGTGCAGAGGGAGAGCAAATTCAACCACAGCTTTGCAGTTATCTTCTGATGAGAGTGGAAACTTTGCAGAACCAGGTACTTCCCTTATGAGATGTAAAAACTCTGGTTCCCTTCTAAGCCAACCAAACACTGTTGGTGTTATAGGAGGGGTATCACTTCTATCAACTCTGATTTTCTTGGAGAAACTTGCTTGTTGGGGTTCAAGAAATGGTAAAGAATGTCCACCTTTTGTTGTTTCCAGTGATCCTGAGTTGAGCAAAGTGCTTTCATTACGTGGTCCTCTTCCTTCTGCAAGGAGCAGATTTGATCGTATCAAATTGAATCAGGACCTTGTGATTGAGAATTTGCGGAGCAAAAGGAACTTTCTGCAGCAGTCTGGAGCTCGTGGTTTGGCCATGCCTTGCCATCTCTCACATGCGTGGCACAGTGAAATTTCTGAGGATAGTTCACTACCCTTTCTTCATGATGGTGATTGTGTTGCCATGGAACTCAAGAACGCCATGTTGAAGCCAATTCATGCTGCTGTTACTGTGGGGATTGGACTTCTGACTACAGATTCAAATTTTGTAGCTAGTTATTACCAGGAGAAGCTTCAAAGTCAGGGATTTGAAGTAGTGTTTCTAGACAAAGCAACCGAAGAACATGTATTGGTTCCTGCAATGGAGGCGTTGTACAGAAAGGACGTGGAAGGGGCAAGGAATTTATTGAGAATTGCAATCCATGTTCTTTTGGTTAGGGCAGTGAATGTGGTGCTTCTGGCATCTGATGATTTGCTGGGGGTTCTCCCTCACAATGATCCTCTTCTACGGAAATGCATAGACCCAATGGATGCTTTGGCCAGGTCAACTATACATTGGGCAGAAACAACGGCAGAGGTACACAAGAACATTTAG
Predicted protein sequences of Glyma.05g008200
>Glyma.05g008200.1.p sequence-type=predicted peptide transcript=Glyma.05g008200.1 locus=Glyma.05g008200 ID=Glyma.05g008200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFVIERRKKISFRNWVVVILEMLERGILMSMQTLNHPPFLTGDAFRKRTQTRCRGRANSTTALQLSSDESGNFAEPGTSLMRCKNSGSLLSQPNTVGVIGGVSLLSTLIFLEKLACWGSRNGKECPPFVVSSDPELSKVLSLRGPLPSARSRFDRIKLNQDLVIENLRSKRNFLQQSGARGLAMPCHLSHAWHSEISEDSSLPFLHDGDCVAMELKNAMLKPIHAAVTVGIGLLTTDSNFVASYYQEKLQSQGFEVVFLDKATEEHVLVPAMEALYRKDVEGARNLLRIAIHVLLVRAVNVVLLASDDLLGVLPHNDPLLRKCIDPMDALARSTIHWAETTAEGRMQFPNPSNW*

>Glyma.05g008200.2.p sequence-type=predicted peptide transcript=Glyma.05g008200.2 locus=Glyma.05g008200 ID=Glyma.05g008200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFVIERRKKISFRNWVVVILEMLERGILMSMQTLNHPPFLTGDAFRKRTQTRCRGRANSTTALQLSSDESGNFAEPGTSLMRCKNSGSLLSQPNTVGVIGGVSLLSTLIFLEKLACWGSRNGKECPPFVVSSDPELSKVLSLRGPLPSARSRFDRIKLNQDLVIENLRSKRNFLQQSGARGLAMPCHLSHAWHSEISEDSSLPFLHDGDCVAMELKNAMLKPIHAAVTVGIGLLTTDSNFVASYYQEKLQSQGFEVVFLDKATEEHVLVPAMEALYRKDVEGARNLLRIAIHVLLVRAVNVVLLASDDLLGVLPHNDPLLRKCIDPMDALARSTIHWAETTAEVHKNI*






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