Glyma.05g007600

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Report for Sequence Feature Glyma.05g007600

Feature Type:	gene_model
Chromosome:	Gm05
Start:	717221
stop:	722645
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05g007600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G14760.1	AT	L-aspartate oxidase	JGI	N/A	IEA
GO:0009435	GO-bp	NAD biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0019363	GO-bp	pyridine nucleotide biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0009507	GO-cc	chloroplast	EnsemblGenomes	N/A	IEA
GO:0008734	GO-mf	L-aspartate oxidase activity	EnsemblGenomes	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	EnsemblGenomes	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	JGI	N/A	IEA
GO:0044318	GO-mf	L-aspartate:fumarate oxidoreductase activity	EnsemblGenomes	N/A	IEA
KOG2403	KOG	Succinate dehydrogenase, flavoprotein subunit	JGI	N/A	IEA
PTHR11632	Panther	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	JGI	N/A	IEA
PTHR11632:SF6	Panther	PROTEIN F48E8.3	JGI	N/A	IEA
PF00890	PFAM	FAD binding domain	JGI	N/A	IEA
PF02910	PFAM	Fumarate reductase flavoprotein C-term	JGI	N/A	IEA
PYRIDNUCSYN-PWY	SoyCyc9	NAD biosynthesis I (from aspartate)	Plant Metabolic Network		ISS
GN7V-48451	SoyCyc9-rxn	L-aspartate oxidase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.05g007600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g007600 not represented in the dataset	Glyma.05g007600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.05g007600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma05g08550	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.05g007600

Limit To All Plant Sequences

>Glyma.05g007600.2 sequence-type=transcript locus=Glyma.05g007600 ID=Glyma.05g007600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TACGTTTACCATTTTTATGTTCAATCTCACTATCAGTGTCATCACAAAAACGTGAACGCTAGCTGGGGCATTGTAATGGCAACTTGTGTTCCTGCTGTAAGTGGTGCACTGCATTATGGAGTGACAAACTGCAAGGGACACAGCTACAGAAGGAGTGCTTCCTTTTCTGATGTGCCTAACACGGGATTCTTACAAAAAGATCTTTCATGGTCTAAAGTGGTATCCAAGGTCCTGCAGATACACAGATGTGGGTTTTCTGCACCTCCACTTCATAAGGATCAGAAACTCTTCAAAGTCATTTCCTCATGGAAGAAAGATAGTCCCACAAAATACTTTGACTTTATCGTCATTGGGAGTGGAATTGCTGGCCTCCGATATGCGCTTGAAGTTGCAAAATATGGATCTGTTGCAGTGATAACCAAGGCTGAGTCTCATGAATGCAATACTAATTATGCTCAAGGTGGTGTTAGTGCTGTGCTATGCCCTTCAGATTCTGTGGAGAGTCACATTAAGGACACCATTGTGGCTGGGGCATATCTTTGTGATGAGGAAAGCGTCCGGGTTGTCTGCACTGAAGGACCCGAAAGAGTCAGAGAACTGATTGCTATGGGTGCATCATTTGATCATGGGGAAGATGGTAACTTGCATCTAATGAGAGAGGGGGGTCATTCACATCATAGAATTGTTCATGCTGCTGATATGACTGGAAAAGAGATTGAACGGGCTCTACTGAAGGAAGTTATCAGTAATCCCAGAATTTTTGTGTTTGAACACCATTTTGCTATAGATCTTCTCACTTGTCAGGATCGATCTGATATGATTTGTCTTGGTGTTGACACACTGAATTCTAAAACCCTAGAGGTGATTAGATTTCTTTCAAAGGTCACTTTACTTGCGTCAGGTGGAGCTGGACATATTTATCCTAAAACTACAAATCCTCTGGTAGCCACTGGAGATGGAATTGCCATGGCACACCGAGCTCAAGCTGTGATTTCCAACATGGAGTTTGTGCAGTTCCATCCAACTGCCTTAGCTGATGAAGGGCTTCCTATTAAACCAACCAAGCCTCGGGAAAATGCATTTCTGATAACTGAAGCTGTCAGAGGTGATGGGGGCATCCTTTATAATTTTGGCATGGAAAGATTCATGCCCTTGTATGATGAGAGGGCAGAGCTTGCTCCAAGGGATGTGGTGGCAAGAAGTATAGACGACCAACTTAAAAAGCGTCATGAGAAGTATGTGCTCCTCGATATAAGTCACAAGCCCAAGGAGGAAATTCTCTCCCATTTCCCCAACATTGCTTCTACGTGTCTCCAGTATGGTTTGGACATAACTCGTCGTCCAATCCCAGTTGTTCCAGCTGCTCATTACATGTGTGGAGGAGTTCAAGCTGGTCTCCAAGGAGAGACCAATGTGAAAGGTCTGTATGTAGCTGGTGAGGTAGCATGCACAGGTTTGCATGGAGCAAATAGACTTGCTAGCAACTCATTGCTTGAGGCACTGGTTTTTGCAAGAAGAGCTGTGCAGCCCTCAGTTGATCACATGAAGGGCTCTAGCCTTGATCTGACTGCATCAAACTTGTGGCCTAGACCCGTTGTGCCTTTGCCACTCGGAAGTAATGTCACAGACAAAATTATGTCAACGACAAAGGAATTGAGGGCAGAACTGCAATCCATCATGTGGGACTATGTAGGAATTGTTCGGTCCACAATGAGACTAGAGACTGCTGAGCAAAAAATTGGTAGTTTAGAAGCTAAATGGGAGGAGTCTCTGTTTCAGCATGGATGGAAGCCAACAATGGTCGGGCCTGAGATCTGTGAGATGAGAAACCTCTTTTGTTGTGCAAAGCTGGTGGTCAGCAGTGCGCTTTCTAGGCATGAGAGCCGTGGACTACATTACACTGTTGATTTTCCTTATCTCGAGGAGAGTAAGAGACTTCCAACAATCATTTTTCCAAGTTCACCTGTAAACAGTACATGGAGTTCTCGGCAATTACACAAGCAGCCCATGTACCAGTAAGGCATCAAATTGTGCCACAATACGTATAAATGGGTAGATTTAATTGAAATCTAGTGAAATAAGAACCTTAAAGTGATAGTCTACTCCCTTATAGTTTTCTGATTTTACTTCATTCATTGTTTAACTATAGCAACTTAGCAAGAAATATATTCCCTATAGGTAATTTGGGTCAATCTCAGTCAGATGTATCAGGTTTACTTTGCAATCAAATCTCAGATTTTAGAGACTTTTATTTTGTTTTTTATATGATATCATGATTCTCAAC

Coding sequences of Glyma.05g007600

Limit To All Plant Sequences

>Glyma.05g007600.1 sequence-type=CDS polypeptide=Glyma.05g007600.1.p locus=Glyma.05g007600 ID=Glyma.05g007600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAACTTGTGTTCCTGCTGTAAGTGGTGCACTGCATTATGGAGTGACAAACTGCAAGGGACACAGCTACAGAAGGAGTGCTTCCTTTTCTGATGTGCCTAACACGGGATTCTTACAAAAAGATCTTTCATGGTCTAAAGTGGTATCCAAGGTCCTGCAGATACACAGATGTGGGTTTTCTGCACCTCCACTTCATAAGGATCAGAAACTCTTCAAAGTCATTTCCTCATGGAAGAAAGATAGTCCCACAAAATACTTTGACTTTATCGTCATTGGGAGTGGAATTGCTGGCCTCCGATATGCGCTTGAAGTTGCAAAATATGGATCTGTTGCAGTGATAACCAAGGCTGAGTCTCATGAATGCAATACTAATTATGCTCAAGGTGGTGTTAGTGCTGTGCTATGCCCTTCAGATTCTGTGGAGAGTCACATTAAGGACACCATTGTGGCTGGGGCATATCTTTGTGATGAGGAAAGCGTCCGGGTTGTCTGCACTGAAGGACCCGAAAGAGTCAGAGAACTGATTGCTATGGGTGCATCATTTGATCATGGGGAAGATGGTAACTTGCATCTAATGAGAGAGGGGGGTCATTCACATCATAGAATTGTTCATGCTGCTGATATGACTGGAAAAGAGATTGAACGGGCTCTACTGAAGGAAGTTATCAGTAATCCCAGAATTTTTGTGTTTGAACACCATTTTGCTATAGATCTTCTCACTTGTCAGGATCGATCTGATATGATTTGTCTTGGTGTTGACACACTGAATTCTAAAACCCTAGAGGTGATTAGATTTCTTTCAAAGGTCACTTTACTTGCGTCAGGTGGAGCTGGACATATTTATCCTAAAACTACAAATCCTCTGGTAGCCACTGGAGATGGAATTGCCATGGCACACCGAGCTCAAGCTGTGATTTCCAACATGGAGTTTGTGCAGTTCCATCCAACTGCCTTAGCTGATGAAGGGCTTCCTATTAAACCAACCAAGCCTCGGGAAAATGCATTTCTGATAACTGAAGCTGTCAGAGGTGATGGGGGCATCCTTTATAATTTTGGCATGGAAAGATTCATGCCCTTGTATGATGAGAGGGCAGAGCTTGCTCCAAGGGATGTGGTGGCAAGAAGTATAGACGACCAACTTAAAAAGCGTCATGAGAAGTATGTGCTCCTCGATATAAGTCACAAGCCCAAGGAGGAAATTCTCTCCCATTTCCCCAACATTGCTTCTACGTGTCTCCAGTATGGTTTGGACATAACTCGTCGTCCAATCCCAGTTGTTCCAGCTGCTCATTACATGTGTGGAGGAGTTCAAGCTGGTCTCCAAGGAGAGACCAATGTGAAAGGTCTGTATGTAGCTGGTGAGGTAGCATGCACAGGTTTGCATGGAGCAAATAGACTTGCTAGCAACTCATTGCTTGAGGCACTGGTTTTTGCAAGAAGAGCTGTGCAGCCCTCAGTTGATCACATGAAGGGCTCTAGCCTTGATCTGACTGCATCAAACTTGTGGCCTAGACCCGTTGTGCCTTTGCCACTCGGAAGTAATGTCACAGACAAAATTATGTCAACGACAAAGGAATTGAGGGCAGAACTGCAATCCATCATGTGGGACTATGTAGGAATTGTTCGGTCCACAATGAGACTAGAGACTGCTGAGCAAAAAATTGGTAGTTTAGAAGCTAAATGGGAGGAGTCTCTGTTTCAGCATGGATGGAAGCCAACAATGGTCGGGCCTGAGATCTGTGAGATGAGAAACCTCTTTTGTTGTGCAAAGCTGGTGGTCAGCAGTGCGCTTTCTAGGCATGAGAGCCGTGGACTACATTACACTGTTGATTTTCCTTATCTCGAGGAGAGTAAGAGACTTCCAACAATCATTTTTCCAAGTTCACCTGTAAACAGTACATGGAGTTCTCGGCAATTACACAAGCAGCCCATGTACCAGTAA

>Glyma.05g007600.2 sequence-type=CDS polypeptide=Glyma.05g007600.2.p locus=Glyma.05g007600 ID=Glyma.05g007600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAACTTGTGTTCCTGCTGTAAGTGGTGCACTGCATTATGGAGTGACAAACTGCAAGGGACACAGCTACAGAAGGAGTGCTTCCTTTTCTGATGTGCCTAACACGGGATTCTTACAAAAAGATCTTTCATGGTCTAAAGTGGTATCCAAGGTCCTGCAGATACACAGATGTGGGTTTTCTGCACCTCCACTTCATAAGGATCAGAAACTCTTCAAAGTCATTTCCTCATGGAAGAAAGATAGTCCCACAAAATACTTTGACTTTATCGTCATTGGGAGTGGAATTGCTGGCCTCCGATATGCGCTTGAAGTTGCAAAATATGGATCTGTTGCAGTGATAACCAAGGCTGAGTCTCATGAATGCAATACTAATTATGCTCAAGGTGGTGTTAGTGCTGTGCTATGCCCTTCAGATTCTGTGGAGAGTCACATTAAGGACACCATTGTGGCTGGGGCATATCTTTGTGATGAGGAAAGCGTCCGGGTTGTCTGCACTGAAGGACCCGAAAGAGTCAGAGAACTGATTGCTATGGGTGCATCATTTGATCATGGGGAAGATGGTAACTTGCATCTAATGAGAGAGGGGGGTCATTCACATCATAGAATTGTTCATGCTGCTGATATGACTGGAAAAGAGATTGAACGGGCTCTACTGAAGGAAGTTATCAGTAATCCCAGAATTTTTGTGTTTGAACACCATTTTGCTATAGATCTTCTCACTTGTCAGGATCGATCTGATATGATTTGTCTTGGTGTTGACACACTGAATTCTAAAACCCTAGAGGTGATTAGATTTCTTTCAAAGGTCACTTTACTTGCGTCAGGTGGAGCTGGACATATTTATCCTAAAACTACAAATCCTCTGGTAGCCACTGGAGATGGAATTGCCATGGCACACCGAGCTCAAGCTGTGATTTCCAACATGGAGTTTGTGCAGTTCCATCCAACTGCCTTAGCTGATGAAGGGCTTCCTATTAAACCAACCAAGCCTCGGGAAAATGCATTTCTGATAACTGAAGCTGTCAGAGGTGATGGGGGCATCCTTTATAATTTTGGCATGGAAAGATTCATGCCCTTGTATGATGAGAGGGCAGAGCTTGCTCCAAGGGATGTGGTGGCAAGAAGTATAGACGACCAACTTAAAAAGCGTCATGAGAAGTATGTGCTCCTCGATATAAGTCACAAGCCCAAGGAGGAAATTCTCTCCCATTTCCCCAACATTGCTTCTACGTGTCTCCAGTATGGTTTGGACATAACTCGTCGTCCAATCCCAGTTGTTCCAGCTGCTCATTACATGTGTGGAGGAGTTCAAGCTGGTCTCCAAGGAGAGACCAATGTGAAAGGTCTGTATGTAGCTGGTGAGGTAGCATGCACAGGTTTGCATGGAGCAAATAGACTTGCTAGCAACTCATTGCTTGAGGCACTGGTTTTTGCAAGAAGAGCTGTGCAGCCCTCAGTTGATCACATGAAGGGCTCTAGCCTTGATCTGACTGCATCAAACTTGTGGCCTAGACCCGTTGTGCCTTTGCCACTCGGAAGTAATGTCACAGACAAAATTATGTCAACGACAAAGGAATTGAGGGCAGAACTGCAATCCATCATGTGGGACTATGTAGGAATTGTTCGGTCCACAATGAGACTAGAGACTGCTGAGCAAAAAATTGGTAGTTTAGAAGCTAAATGGGAGGAGTCTCTGTTTCAGCATGGATGGAAGCCAACAATGGTCGGGCCTGAGATCTGTGAGATGAGAAACCTCTTTTGTTGTGCAAAGCTGGTGGTCAGCAGTGCGCTTTCTAGGCATGAGAGCCGTGGACTACATTACACTGTTGATTTTCCTTATCTCGAGGAGAGTAAGAGACTTCCAACAATCATTTTTCCAAGTTCACCTGTAAACAGTACATGGAGTTCTCGGCAATTACACAAGCAGCCCATGTACCAGTAA

Predicted protein sequences of Glyma.05g007600

Limit To All Plant Sequences

>Glyma.05g007600.1.p sequence-type=predicted peptide transcript=Glyma.05g007600.1 locus=Glyma.05g007600 ID=Glyma.05g007600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATCVPAVSGALHYGVTNCKGHSYRRSASFSDVPNTGFLQKDLSWSKVVSKVLQIHRCGFSAPPLHKDQKLFKVISSWKKDSPTKYFDFIVIGSGIAGLRYALEVAKYGSVAVITKAESHECNTNYAQGGVSAVLCPSDSVESHIKDTIVAGAYLCDEESVRVVCTEGPERVRELIAMGASFDHGEDGNLHLMREGGHSHHRIVHAADMTGKEIERALLKEVISNPRIFVFEHHFAIDLLTCQDRSDMICLGVDTLNSKTLEVIRFLSKVTLLASGGAGHIYPKTTNPLVATGDGIAMAHRAQAVISNMEFVQFHPTALADEGLPIKPTKPRENAFLITEAVRGDGGILYNFGMERFMPLYDERAELAPRDVVARSIDDQLKKRHEKYVLLDISHKPKEEILSHFPNIASTCLQYGLDITRRPIPVVPAAHYMCGGVQAGLQGETNVKGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSVDHMKGSSLDLTASNLWPRPVVPLPLGSNVTDKIMSTTKELRAELQSIMWDYVGIVRSTMRLETAEQKIGSLEAKWEESLFQHGWKPTMVGPEICEMRNLFCCAKLVVSSALSRHESRGLHYTVDFPYLEESKRLPTIIFPSSPVNSTWSSRQLHKQPMYQ*

>Glyma.05g007600.2.p sequence-type=predicted peptide transcript=Glyma.05g007600.2 locus=Glyma.05g007600 ID=Glyma.05g007600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATCVPAVSGALHYGVTNCKGHSYRRSASFSDVPNTGFLQKDLSWSKVVSKVLQIHRCGFSAPPLHKDQKLFKVISSWKKDSPTKYFDFIVIGSGIAGLRYALEVAKYGSVAVITKAESHECNTNYAQGGVSAVLCPSDSVESHIKDTIVAGAYLCDEESVRVVCTEGPERVRELIAMGASFDHGEDGNLHLMREGGHSHHRIVHAADMTGKEIERALLKEVISNPRIFVFEHHFAIDLLTCQDRSDMICLGVDTLNSKTLEVIRFLSKVTLLASGGAGHIYPKTTNPLVATGDGIAMAHRAQAVISNMEFVQFHPTALADEGLPIKPTKPRENAFLITEAVRGDGGILYNFGMERFMPLYDERAELAPRDVVARSIDDQLKKRHEKYVLLDISHKPKEEILSHFPNIASTCLQYGLDITRRPIPVVPAAHYMCGGVQAGLQGETNVKGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSVDHMKGSSLDLTASNLWPRPVVPLPLGSNVTDKIMSTTKELRAELQSIMWDYVGIVRSTMRLETAEQKIGSLEAKWEESLFQHGWKPTMVGPEICEMRNLFCCAKLVVSSALSRHESRGLHYTVDFPYLEESKRLPTIIFPSSPVNSTWSSRQLHKQPMYQ*

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