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Report for Sequence Feature Glyma.05g006000

Feature Type:gene_model
Chromosome:Gm05
Start:526050
stop:530851
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g006000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G10630.1AT ADP-ribosylation factor A1F JGI N/AIEA
AT5G14670.1AT ADP-ribosylation factor A1B JGI N/AIEA
GO:0007264GO-bp small GTPase mediated signal transduction EnsemblGenomesN/AIEA
GO:0007264GO-bp small GTPase mediated signal transduction JGI N/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
KOG0070 KOG GTP-binding ADP-ribosylation factor Arf1 JGI N/AIEA
PTHR11711Panther ADP RIBOSYLATION FACTOR-RELATED JGI N/AIEA
PF00025PFAM ADP-ribosylation factor family JGI N/AIEA

Expression Patterns of Glyma.05g006000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g006000
ParalogEvidenceComments
Glyma.19g006400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g006000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g08700 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g006000
>Glyma.05g006000.2 sequence-type=transcript locus=Glyma.05g006000 ID=Glyma.05g006000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATGGAGTTAAGAAAAATTGATTACAGAAGGAGAATTGGAGGACACACAATGCGTCGCCGTATCGAAGACATTTGTTGTTAAATAACGGTGGAAGTGAAACTGCGAtctctctctctctttcactctttctcCGAGAACAAAAAAAAAAACGTGATTCGCTCTTCTCTTCGAATAAACCACAAAACCAACAAACGAGAAGAGGAGTGAGAGAAGATGGGGTTGTCGTTCACGAAGCTGTTCAGCAGGTTGTTTGCGAAGAAGGAAATGAGGATTCTGATGGTAGGTCTCGATGCTGCTGGTAAGACAACCATCTTGTACAAGCTCAAGCTTGGAGAAATCGTCACCACCATCCCCACCATCGGATTTAATGTTGAGACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGTGGTCAGGACAAGATCCGTCCTCTGTGGAGGCATTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGGGATCGAGTGGTTGAGGCAAGGGATGAGTTGCACAGGATGTTGAATGAGGATTAGAAAATTGCGCCAGTTTTTGCTCTTGGGCCAAGAGTCACCTGTTCAAATATTGTCTTTGCGAAATTCCAGTTCAGATAGACTTGGTACCTGTTTGTTTTAAAGTTGAGCAGACCTAATTTTGATAGAATTGGTTAATTATTTATTGTGATTCAGATGTGTGTCTAAATTAATTATAGTAATAAAGTTTATATTGAAACA

>Glyma.05g006000.3 sequence-type=transcript locus=Glyma.05g006000 ID=Glyma.05g006000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATGGAGTTAAGAAAAATTGATTACAGAAGGAGAATTGGAGGACACACAATGCGTCGCCGTATCGAAGACATTTGTTGTTAAATAACGGTGGAAGTGAAACTGCGAtctctctctctctttcactctttctcCGAGAACAAAAAAAAAAACGTGATTCGCTCTTCTCTTCGAATAAACCACAAAACCAACAAACGAGAAGAGGAGTGAGAGAAGATGGGGTTGTCGTTCACGAAGCTGTTCAGCAGGTTGTTTGCGAAGAAGGAAATGAGGATTCTGATGGTAGGTCTCGATGCTGCTGGTAAGACAACCATCTTGTACAAGCTCAAGCTTGGAGAAATCGTCACCACCATCCCCACCATCGGATTTAATGTTGAGACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGTGGTCAGGACAAGCAATGATAGGGATCGAGTGGTTGAGGCAAGGGATGAGTTGCACAGGATGTTGAATGAGGATGAACTTAGAGATGCTGTTTTGCTTGTTTTTGCCAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCAGAAATAACTGACAAGCTTGGACTTCATTCACTCCGTCAACGCCACTGGTATATCCAAAGCACTTGTGCAACTTCTGGAGAGGGTCTCTATGAGGGTTTGGACTGGCTTTCTAACAACATTGCCAGCAAGGCATGAGACATTTGAAAATTTTTGGTCTTGTCTGGTGATTTCCTGCTGAGTATGGCGGTTCTTGGAGAAAGATGCTTATCCTTTCTTGTCAATGTTGTAATAGCAGAATGCTTGCTAGAAGTATTCTCTTCTTTTGTGTAACTTGGGTTTGTATGATTGCTTAAATTAGCTAATACTTTTAGCTATAATTGGAACTCTTGGACCCTCTTGTGCGTGCCTTGTTTGTGTTCATTTTGTTAGTTTGATTTTTGGTTGAATATTTCCGTGCGTTTTGTTCTTGGAGTGCTTGTTGGTGATGATAGTTGAATGAGGATTAGAAAATTGCGCCAGTTTTTGCTCTTGGGCCAAGAGTCACCTGTTCAAATATTGTCTTTGCGAAATTCCAGTTCAGATAGACTTGGTACCTGTTTGTTTTAAAGTTGAGCAGACCTAATTTTGATAGAATTGGTTAATTATTTATTGTGATTCAGATGTGTGTCTAAATTAATTATAGTAATAAAGTTTATATTGAAACA

>Glyma.05g006000.4 sequence-type=transcript locus=Glyma.05g006000 ID=Glyma.05g006000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATGGAGTTAAGAAAAATTGATTACAGAAGGAGAATTGGAGGACACACAATGCGTCGCCGTATCGAAGACATTTGTTGTTAAATAACGGTGGAAGTGAAACTGCGAtctctctctctctttcactctttctcCGAGAACAAAAAAAAAAACGTGATTCGCTCTTCTCTTCGAATAAACCACAAAACCAACAAACGAGAAGAGGAGTGAGAGAAGATGGGGTTGTCGTTCACGAAGCTGTTCAGCAGGTTGTTTGCGAAGAAGGAAATGAGGATTCTGATGGTAGGTCTCGATGCTGCTGGTAAGACAACCATCTTGTACAAGCTCAAGCTTGGAGAAATCGTCACCACCATCCCCACCATCGGATTTAATGTTGAGACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGTGGTCAGGACAAGATCCGTCCTCTGTGGAGGCATTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGGGATCGAGTGGTTGAGGCAAGGGATGAGTTGCACAGGATGTTGAATGAGGATGAACTTAGAGATGCTGTTTTGCTTGTTTTTGCCAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCAGAAATAACTGACAAGCTTGGACTTCATTCACTCCGTCAACGCCACTGGTATGGAGATCTGATATGAATCAAAATAAACTCTCAATTGATAAAAATGATGATTTGAAATTTCTTGCATATATGAGGGAACCTTCGGGGGTTATTCTGTAACTACAATGCTACATTAACTTCTACCGAAGAGACTTGCATTTCTGAGAAACCATTTTTCATTCAATGGCTTGATTTATTTCAGGTATATCCAAAGCACTTGTGCAACTTCTGGAGAGGGTCTCTATGAGGGTTTGGACTGGCTTTCTAACAACATTGCCAGCAAGGTAAGTCTTAATGCTGTAGTTCTAATTAAAATTAAAATGTTATTGTTAGGATGACTT
Coding sequences of Glyma.05g006000
>Glyma.05g006000.1 sequence-type=CDS polypeptide=Glyma.05g006000.1.p locus=Glyma.05g006000 ID=Glyma.05g006000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGTTGTCGTTCACGAAGCTGTTCAGCAGGTTGTTTGCGAAGAAGGAAATGAGGATTCTGATGGTAGGTCTCGATGCTGCTGGTAAGACAACCATCTTGTACAAGCTCAAGCTTGGAGAAATCGTCACCACCATCCCCACCATCGGATTTAATGTTGAGACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGTGGTCAGGACAAGATCCGTCCTCTGTGGAGGCATTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGGGATCGAGTGGTTGAGGCAAGGGATGAGTTGCACAGGATGTTGAATGAGGATGAACTTAGAGATGCTGTTTTGCTTGTTTTTGCCAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCAGAAATAACTGACAAGCTTGGACTTCATTCACTCCGTCAACGCCACTGGTATATCCAAAGCACTTGTGCAACTTCTGGAGAGGGTCTCTATGAGGGTTTGGACTGGCTTTCTAACAACATTGCCAGCAAGGCATGA

>Glyma.05g006000.2 sequence-type=CDS polypeptide=Glyma.05g006000.2.p locus=Glyma.05g006000 ID=Glyma.05g006000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGTTGTCGTTCACGAAGCTGTTCAGCAGGTTGTTTGCGAAGAAGGAAATGAGGATTCTGATGGTAGGTCTCGATGCTGCTGGTAAGACAACCATCTTGTACAAGCTCAAGCTTGGAGAAATCGTCACCACCATCCCCACCATCGGATTTAATGTTGAGACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGTGGTCAGGACAAGATCCGTCCTCTGTGGAGGCATTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGGGATCGAGTGGTTGAGGCAAGGGATGAGTTGCACAGGATGTTGAATGAGGATTAG

>Glyma.05g006000.3 sequence-type=CDS polypeptide=Glyma.05g006000.3.p locus=Glyma.05g006000 ID=Glyma.05g006000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGCTGGTAAGACAACCATCTTGTACAAGCTCAAGCTTGGAGAAATCGTCACCACCATCCCCACCATCGGATTTAATGTTGAGACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGTGGTCAGGACAAGCAATGATAGGGATCGAGTGGTTGAGGCAAGGGATGAGTTGCACAGGATGTTGAATGAGGATGAACTTAGAGATGCTGTTTTGCTTGTTTTTGCCAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCAGAAATAACTGACAAGCTTGGACTTCATTCACTCCGTCAACGCCACTGGTATATCCAAAGCACTTGTGCAACTTCTGGAGAGGGTCTCTATGAGGGTTTGGACTGGCTTTCTAACAACATTGCCAGCAAGGCATGA

>Glyma.05g006000.4 sequence-type=CDS polypeptide=Glyma.05g006000.4.p locus=Glyma.05g006000 ID=Glyma.05g006000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGTTGTCGTTCACGAAGCTGTTCAGCAGGTTGTTTGCGAAGAAGGAAATGAGGATTCTGATGGTAGGTCTCGATGCTGCTGGTAAGACAACCATCTTGTACAAGCTCAAGCTTGGAGAAATCGTCACCACCATCCCCACCATCGGATTTAATGTTGAGACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGTGGTCAGGACAAGATCCGTCCTCTGTGGAGGCATTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGGGATCGAGTGGTTGAGGCAAGGGATGAGTTGCACAGGATGTTGAATGAGGATGAACTTAGAGATGCTGTTTTGCTTGTTTTTGCCAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCAGAAATAACTGACAAGCTTGGACTTCATTCACTCCGTCAACGCCACTGGTATGGAGATCTGATATGA
Predicted protein sequences of Glyma.05g006000
>Glyma.05g006000.1.p sequence-type=predicted peptide transcript=Glyma.05g006000.1 locus=Glyma.05g006000 ID=Glyma.05g006000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA*

>Glyma.05g006000.2.p sequence-type=predicted peptide transcript=Glyma.05g006000.2 locus=Glyma.05g006000 ID=Glyma.05g006000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED*

>Glyma.05g006000.3.p sequence-type=predicted peptide transcript=Glyma.05g006000.3 locus=Glyma.05g006000 ID=Glyma.05g006000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLLVRQPSCTSSSLEKSSPPSPPSDLMLRLWSTRTSASLCGMLVVRTSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA*

>Glyma.05g006000.4.p sequence-type=predicted peptide transcript=Glyma.05g006000.4 locus=Glyma.05g006000 ID=Glyma.05g006000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYGDLI*






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