Glyma.05g006000

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Report for Sequence Feature Glyma.05g006000

Feature Type:	gene_model
Chromosome:	Gm05
Start:	526050
stop:	530851
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05g006000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10630.1	AT	ADP-ribosylation factor A1F	JGI	N/A	IEA
AT5G14670.1	AT	ADP-ribosylation factor A1B	JGI	N/A	IEA
GO:0007264	GO-bp	small GTPase mediated signal transduction	EnsemblGenomes	N/A	IEA
GO:0007264	GO-bp	small GTPase mediated signal transduction	JGI	N/A	IEA
GO:0005622	GO-cc	intracellular	EnsemblGenomes	N/A	IEA
GO:0005622	GO-cc	intracellular	JGI	N/A	IEA
GO:0005634	GO-cc	nucleus	JGI	N/A	IEA
GO:0005737	GO-cc	cytoplasm	JGI	N/A	IEA
GO:0000166	GO-mf	nucleotide binding	EnsemblGenomes	N/A	IEA
GO:0005525	GO-mf	GTP binding	EnsemblGenomes	N/A	IEA
GO:0005525	GO-mf	GTP binding	JGI	N/A	IEA
KOG0070	KOG	GTP-binding ADP-ribosylation factor Arf1	JGI	N/A	IEA
PTHR11711	Panther	ADP RIBOSYLATION FACTOR-RELATED	JGI	N/A	IEA
PF00025	PFAM	ADP-ribosylation factor family	JGI	N/A	IEA

Expression Patterns of Glyma.05g006000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g006000 not represented in the dataset	Glyma.05g006000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.05g006000

Paralog	Evidence	Comments
Glyma.19g006400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g006000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma05g08700	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.05g006000

Limit To All Plant Sequences

>Glyma.05g006000.2 sequence-type=transcript locus=Glyma.05g006000 ID=Glyma.05g006000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATGGAGTTAAGAAAAATTGATTACAGAAGGAGAATTGGAGGACACACAATGCGTCGCCGTATCGAAGACATTTGTTGTTAAATAACGGTGGAAGTGAAACTGCGAtctctctctctctttcactctttctcCGAGAACAAAAAAAAAAACGTGATTCGCTCTTCTCTTCGAATAAACCACAAAACCAACAAACGAGAAGAGGAGTGAGAGAAGATGGGGTTGTCGTTCACGAAGCTGTTCAGCAGGTTGTTTGCGAAGAAGGAAATGAGGATTCTGATGGTAGGTCTCGATGCTGCTGGTAAGACAACCATCTTGTACAAGCTCAAGCTTGGAGAAATCGTCACCACCATCCCCACCATCGGATTTAATGTTGAGACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGTGGTCAGGACAAGATCCGTCCTCTGTGGAGGCATTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGGGATCGAGTGGTTGAGGCAAGGGATGAGTTGCACAGGATGTTGAATGAGGATTAGAAAATTGCGCCAGTTTTTGCTCTTGGGCCAAGAGTCACCTGTTCAAATATTGTCTTTGCGAAATTCCAGTTCAGATAGACTTGGTACCTGTTTGTTTTAAAGTTGAGCAGACCTAATTTTGATAGAATTGGTTAATTATTTATTGTGATTCAGATGTGTGTCTAAATTAATTATAGTAATAAAGTTTATATTGAAACA

>Glyma.05g006000.3 sequence-type=transcript locus=Glyma.05g006000 ID=Glyma.05g006000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATGGAGTTAAGAAAAATTGATTACAGAAGGAGAATTGGAGGACACACAATGCGTCGCCGTATCGAAGACATTTGTTGTTAAATAACGGTGGAAGTGAAACTGCGAtctctctctctctttcactctttctcCGAGAACAAAAAAAAAAACGTGATTCGCTCTTCTCTTCGAATAAACCACAAAACCAACAAACGAGAAGAGGAGTGAGAGAAGATGGGGTTGTCGTTCACGAAGCTGTTCAGCAGGTTGTTTGCGAAGAAGGAAATGAGGATTCTGATGGTAGGTCTCGATGCTGCTGGTAAGACAACCATCTTGTACAAGCTCAAGCTTGGAGAAATCGTCACCACCATCCCCACCATCGGATTTAATGTTGAGACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGTGGTCAGGACAAGCAATGATAGGGATCGAGTGGTTGAGGCAAGGGATGAGTTGCACAGGATGTTGAATGAGGATGAACTTAGAGATGCTGTTTTGCTTGTTTTTGCCAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCAGAAATAACTGACAAGCTTGGACTTCATTCACTCCGTCAACGCCACTGGTATATCCAAAGCACTTGTGCAACTTCTGGAGAGGGTCTCTATGAGGGTTTGGACTGGCTTTCTAACAACATTGCCAGCAAGGCATGAGACATTTGAAAATTTTTGGTCTTGTCTGGTGATTTCCTGCTGAGTATGGCGGTTCTTGGAGAAAGATGCTTATCCTTTCTTGTCAATGTTGTAATAGCAGAATGCTTGCTAGAAGTATTCTCTTCTTTTGTGTAACTTGGGTTTGTATGATTGCTTAAATTAGCTAATACTTTTAGCTATAATTGGAACTCTTGGACCCTCTTGTGCGTGCCTTGTTTGTGTTCATTTTGTTAGTTTGATTTTTGGTTGAATATTTCCGTGCGTTTTGTTCTTGGAGTGCTTGTTGGTGATGATAGTTGAATGAGGATTAGAAAATTGCGCCAGTTTTTGCTCTTGGGCCAAGAGTCACCTGTTCAAATATTGTCTTTGCGAAATTCCAGTTCAGATAGACTTGGTACCTGTTTGTTTTAAAGTTGAGCAGACCTAATTTTGATAGAATTGGTTAATTATTTATTGTGATTCAGATGTGTGTCTAAATTAATTATAGTAATAAAGTTTATATTGAAACA

>Glyma.05g006000.4 sequence-type=transcript locus=Glyma.05g006000 ID=Glyma.05g006000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATGGAGTTAAGAAAAATTGATTACAGAAGGAGAATTGGAGGACACACAATGCGTCGCCGTATCGAAGACATTTGTTGTTAAATAACGGTGGAAGTGAAACTGCGAtctctctctctctttcactctttctcCGAGAACAAAAAAAAAAACGTGATTCGCTCTTCTCTTCGAATAAACCACAAAACCAACAAACGAGAAGAGGAGTGAGAGAAGATGGGGTTGTCGTTCACGAAGCTGTTCAGCAGGTTGTTTGCGAAGAAGGAAATGAGGATTCTGATGGTAGGTCTCGATGCTGCTGGTAAGACAACCATCTTGTACAAGCTCAAGCTTGGAGAAATCGTCACCACCATCCCCACCATCGGATTTAATGTTGAGACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGTGGTCAGGACAAGATCCGTCCTCTGTGGAGGCATTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGGGATCGAGTGGTTGAGGCAAGGGATGAGTTGCACAGGATGTTGAATGAGGATGAACTTAGAGATGCTGTTTTGCTTGTTTTTGCCAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCAGAAATAACTGACAAGCTTGGACTTCATTCACTCCGTCAACGCCACTGGTATGGAGATCTGATATGAATCAAAATAAACTCTCAATTGATAAAAATGATGATTTGAAATTTCTTGCATATATGAGGGAACCTTCGGGGGTTATTCTGTAACTACAATGCTACATTAACTTCTACCGAAGAGACTTGCATTTCTGAGAAACCATTTTTCATTCAATGGCTTGATTTATTTCAGGTATATCCAAAGCACTTGTGCAACTTCTGGAGAGGGTCTCTATGAGGGTTTGGACTGGCTTTCTAACAACATTGCCAGCAAGGTAAGTCTTAATGCTGTAGTTCTAATTAAAATTAAAATGTTATTGTTAGGATGACTT

Coding sequences of Glyma.05g006000

Limit To All Plant Sequences

>Glyma.05g006000.1 sequence-type=CDS polypeptide=Glyma.05g006000.1.p locus=Glyma.05g006000 ID=Glyma.05g006000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGTTGTCGTTCACGAAGCTGTTCAGCAGGTTGTTTGCGAAGAAGGAAATGAGGATTCTGATGGTAGGTCTCGATGCTGCTGGTAAGACAACCATCTTGTACAAGCTCAAGCTTGGAGAAATCGTCACCACCATCCCCACCATCGGATTTAATGTTGAGACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGTGGTCAGGACAAGATCCGTCCTCTGTGGAGGCATTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGGGATCGAGTGGTTGAGGCAAGGGATGAGTTGCACAGGATGTTGAATGAGGATGAACTTAGAGATGCTGTTTTGCTTGTTTTTGCCAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCAGAAATAACTGACAAGCTTGGACTTCATTCACTCCGTCAACGCCACTGGTATATCCAAAGCACTTGTGCAACTTCTGGAGAGGGTCTCTATGAGGGTTTGGACTGGCTTTCTAACAACATTGCCAGCAAGGCATGA

>Glyma.05g006000.2 sequence-type=CDS polypeptide=Glyma.05g006000.2.p locus=Glyma.05g006000 ID=Glyma.05g006000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGTTGTCGTTCACGAAGCTGTTCAGCAGGTTGTTTGCGAAGAAGGAAATGAGGATTCTGATGGTAGGTCTCGATGCTGCTGGTAAGACAACCATCTTGTACAAGCTCAAGCTTGGAGAAATCGTCACCACCATCCCCACCATCGGATTTAATGTTGAGACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGTGGTCAGGACAAGATCCGTCCTCTGTGGAGGCATTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGGGATCGAGTGGTTGAGGCAAGGGATGAGTTGCACAGGATGTTGAATGAGGATTAG

>Glyma.05g006000.3 sequence-type=CDS polypeptide=Glyma.05g006000.3.p locus=Glyma.05g006000 ID=Glyma.05g006000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGCTGGTAAGACAACCATCTTGTACAAGCTCAAGCTTGGAGAAATCGTCACCACCATCCCCACCATCGGATTTAATGTTGAGACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGTGGTCAGGACAAGCAATGATAGGGATCGAGTGGTTGAGGCAAGGGATGAGTTGCACAGGATGTTGAATGAGGATGAACTTAGAGATGCTGTTTTGCTTGTTTTTGCCAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCAGAAATAACTGACAAGCTTGGACTTCATTCACTCCGTCAACGCCACTGGTATATCCAAAGCACTTGTGCAACTTCTGGAGAGGGTCTCTATGAGGGTTTGGACTGGCTTTCTAACAACATTGCCAGCAAGGCATGA

>Glyma.05g006000.4 sequence-type=CDS polypeptide=Glyma.05g006000.4.p locus=Glyma.05g006000 ID=Glyma.05g006000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGTTGTCGTTCACGAAGCTGTTCAGCAGGTTGTTTGCGAAGAAGGAAATGAGGATTCTGATGGTAGGTCTCGATGCTGCTGGTAAGACAACCATCTTGTACAAGCTCAAGCTTGGAGAAATCGTCACCACCATCCCCACCATCGGATTTAATGTTGAGACTGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGTGGTCAGGACAAGATCCGTCCTCTGTGGAGGCATTATTTCCAGAACACTCAGGGTCTCATTTTTGTGGTTGATAGCAATGATAGGGATCGAGTGGTTGAGGCAAGGGATGAGTTGCACAGGATGTTGAATGAGGATGAACTTAGAGATGCTGTTTTGCTTGTTTTTGCCAACAAGCAAGATCTTCCTAATGCAATGAATGCTGCAGAAATAACTGACAAGCTTGGACTTCATTCACTCCGTCAACGCCACTGGTATGGAGATCTGATATGA

Predicted protein sequences of Glyma.05g006000

Limit To All Plant Sequences

>Glyma.05g006000.1.p sequence-type=predicted peptide transcript=Glyma.05g006000.1 locus=Glyma.05g006000 ID=Glyma.05g006000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA*

>Glyma.05g006000.2.p sequence-type=predicted peptide transcript=Glyma.05g006000.2 locus=Glyma.05g006000 ID=Glyma.05g006000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED*

>Glyma.05g006000.3.p sequence-type=predicted peptide transcript=Glyma.05g006000.3 locus=Glyma.05g006000 ID=Glyma.05g006000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLLVRQPSCTSSSLEKSSPPSPPSDLMLRLWSTRTSASLCGMLVVRTSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA*

>Glyma.05g006000.4.p sequence-type=predicted peptide transcript=Glyma.05g006000.4 locus=Glyma.05g006000 ID=Glyma.05g006000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYGDLI*

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