SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.05g002600): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.05g002600): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.05g002600

Feature Type:gene_model
Chromosome:Gm05
Start:186374
stop:190825
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g002600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G27560.1AT Protein kinase superfamily protein JGI N/AIEA
AT5G50180.1AT Protein kinase superfamily protein JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0035556GO-bp intracellular signal transduction EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0004674GO-mf protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0004871GO-mf signal transducer activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG0192 KOG Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs JGI N/AIEA
PTHR23257Panther SERINE-THREONINE PROTEIN KINASE JGI N/AIEA
PTHR23257:SF83Panther PROTEIN KINASE ATN1-RELATED JGI N/AIEA
PF07714PFAM Protein tyrosine kinase JGI N/AIEA

Proteins Associated with Glyma.05g002600
LocusGene SymbolProtein Name
Raf41-1 Raf41 proto-oncogene serine/threonine protein kinase gene 1

Expression Patterns of Glyma.05g002600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g002600 not represented in the dataset
Glyma.05g002600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.05g002600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g09120 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05g002600
>Glyma.05g002600.2 sequence-type=transcript locus=Glyma.05g002600 ID=Glyma.05g002600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGAATATATATGGAGTAGAAATGTAAATTAGACCAAGTTGATGTGGTTAAAAATCAGAGAACGCATAATAGATATAAAAATCAAAATGTTGCTGTTAAGATTATCAACAAGGGAGAAACTCTGGAAGAGATTTCTAGGAGAGAGGCTCGGTTTGCAAGAGAGGTTGCTATGTTGTCGAGAGTTCAACACAAAAATCTGGTTAAGTTTATTGGGGCTTGCAAAGAACCTGTCATGGTTATAGTAACTGAACTTCTATTGGGTGGGACATTGCGCAAATATCTCTTGAATATGCGTCCAAAGTGCTTGGATATGACTGTGGCTATTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGTTTACACTCTCATGGGATCATTCACCGTGATCTTAAACCCGATAACTTGATCTTGACAGATGATCATAAGGCAGTTAAACTTGCTGATTTTGGTCTAGCCAGAGAAGAGTCCTTAACTGAGATGATGACTGCTGAAACAGGAACATATCGTTGGATGGCTCCAGAACTATACAGCACTGTTACTCTAAGACAAGGTGAGAAGAAGCATTACAACCACAAGGTGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAACTCATCCATAATAAGTTACCCTTTGAAGGCATGTCTAATCTACAGGCAGCATATGCAGCTGCTTTTAAGAATACAAGGCCCAGTGCTGAAGACCTTCCTGAGGATTTAGCTCTGATTGTAACTTCATGTTGGAAAGAGGATCCGAATGATCGACCAAATTTCAGTCAAATCATACAGATGCTCCTTCGATATCTCTCCACCGTTTCACCACCAGAACCGGTTGTTCCTCTGCGGATTACTTCATCTGAGAACGCGGTGTTGCCACCAGAATCTCCTGGTACAAGTGCATTAATGCTTGGAAGAGATGGCTCTAGAGAAACCACAACAGCCAAAGGGTTTTTCTTCTGCTTTAACCAGTGTTACTGAGGCCTCAAAACACATCATTTGGCGTTTGTCCTTATCCCAGATAACAGTTAGGAAAACTAAATAAACCAAATTTACCAATTGTAACAACCAGAATCTTGATAAGAAAATGTTTATTGTCAAATAGTGAGTTTAGTAGCAATTAGTAACTAAGAAAGTGCCTTTGTTCACAGCAAGAGTGGCTGGCAAGCTCTTTTTAACATTTATGGTAACCTTCTTCTGACTTATATCCAGAAAATTTTGGGGTTAAGGTTGCTGAGATGTAATATCATTGTAAAGTAAGGTTCATCCAAAGGCCTTTACCTCTTTCTTGTTTATGTATGTGGCATGCATAATTAAAAGTGAAAAGGATGAAATGTTTACATTTGCTTTCATGAAACCTTGTATTGTTGCCAATTTGT

>Glyma.05g002600.3 sequence-type=transcript locus=Glyma.05g002600 ID=Glyma.05g002600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ttttAATGACTACTCTAACTTCTGGGTTTGTTGTTGAGTGCCTCCTAACATGTGGGGTTTTATTCTCTGCCTCCTAAACAAAGATATAAAAATCAAAATGTTGCTGTTAAGATTATCAACAAGGGAGAAACTCTGGAAGAGATTTCTAGGAGAGAGGCTCGGTTTGCAAGAGAGGTTGCTATGTTGTCGAGAGTTCAACACAAAAATCTGGTTAAGTTTATTGGGGCTTGCAAAGAACCTGTCATGGTTATAGTAACTGAACTTCTATTGGGTGGGACATTGCGCAAATATCTCTTGAATATGCGTCCAAAGTGCTTGGATATGACTGTGGCTATTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGTTTACACTCTCATGGGATCATTCACCGTGATCTTAAACCCGATAACTTGATCTTGACAGATGATCATAAGGCAGTTAAACTTGCTGATTTTGGTCTAGCCAGAGAAGAGTCCTTAACTGAGATGATGACTGCTGAAACAGGAACATATCGTTGGATGGCTCCAGAACTATACAGCACTGTTACTCTAAGACAAGGTGAGAAGAAGCATTACAACCACAAGGTGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAACTCATCCATAATAAGTTACCCTTTGAAGGCATGTCTAATCTACAGGCAGCATATGCAGCTGCTTTTAAGAATACAAGGCCCAGTGCTGAAGACCTTCCTGAGGATTTAGCTCTGATTGTAACTTCATGTTGGAAAGAGGATCCGAATGATCGACCAAATTTCAGTCAAATCATACAGATGCTCCTTCGATATCTCTCCACCGTTTCACCACCAGAACCGGTTGTTCCTCTGCGGATTACTTCATCTGAGAACGCGGTGTTGCCACCAGAATCTCCTGGTACAAGTGCATTAATGCTTGGAAGAGATGGCTCTAGAGAAACCACAACAGCCAAAGGGTTTTTCTTCTGCTTTAACCAGTGTTACTGAGGCCTCAAAACACATCATTTGGCGTTTGTCCTTATCCCAGATAACAGTTAGGAAAACTAAATAAACCAAATTTACCAATTGTAACAACCAGAATCTTGATAAGAAAATGTTTATTGTCAAATAGTGAGTTTAGTAGCAATTAGTAACTAAGAAAGTGCCTTTGTTCACAGCAAGAGTGGCTGGCAAGCTCTTTTTAACATTTATGGTAACCTTCTTCTGACTTATATCCAGAAAATTTTGGGGTTAAGGTTGCTGAGATGTAATATCATTGTAAAGTAAGGTTCATCCAAAGGCCTTTACCTCTTTCTTGTTTATGTATGTGGCATGCATAATTAAAAGTGAAAAGGATGAAATGTTTACATTTGCTTTCATGAAACCTTGTATTGTTGCCAATTTGT
Coding sequences of Glyma.05g002600
>Glyma.05g002600.1 sequence-type=CDS polypeptide=Glyma.05g002600.1.p locus=Glyma.05g002600 ID=Glyma.05g002600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGATCTGGCAATGAGGTTCACTCAGTTGGGGACTTCAATTTAGATTCCAAGTGGCTTGTAGATCCCAAACAACTATTTATTGGTCCAAAAATTGGGGAGGGTGCTCATGCCAAAGTATATGAAGGAAAATATAAAAATCAAAATGTTGCTGTTAAGATTATCAACAAGGGAGAAACTCTGGAAGAGATTTCTAGGAGAGAGGCTCGGTTTGCAAGAGAGGTTGCTATGTTGTCGAGAGTTCAACACAAAAATCTGGTTAAGTTTATTGGGGCTTGCAAAGAACCTGTCATGGTTATAGTAACTGAACTTCTATTGGGTGGGACATTGCGCAAATATCTCTTGAATATGCGTCCAAAGTGCTTGGATATGACTGTGGCTATTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGTTTACACTCTCATGGGATCATTCACCGTGATCTTAAACCCGATAACTTGATCTTGACAGATGATCATAAGGCAGTTAAACTTGCTGATTTTGGTCTAGCCAGAGAAGAGTCCTTAACTGAGATGATGACTGCTGAAACAGGAACATATCGTTGGATGGCTCCAGAACTATACAGCACTGTTACTCTAAGACAAGGTGAGAAGAAGCATTACAACCACAAGGTGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAACTCATCCATAATAAGTTACCCTTTGAAGGCATGTCTAATCTACAGGCAGCATATGCAGCTGCTTTTAAGAATACAAGGCCCAGTGCTGAAGACCTTCCTGAGGATTTAGCTCTGATTGTAACTTCATGTTGGAAAGAGGATCCGAATGATCGACCAAATTTCAGTCAAATCATACAGATGCTCCTTCGATATCTCTCCACCGTTTCACCACCAGAACCGGTTGTTCCTCTGCGGATTACTTCATCTGAGAACGCGGTGTTGCCACCAGAATCTCCTGGTACAAGTGCATTAATGCTTGGAAGAGATGGCTCTAGAGAAACCACAACAGCCAAAGGGTTTTTCTTCTGCTTTAACCAGTGTTACTGA

>Glyma.05g002600.2 sequence-type=CDS polypeptide=Glyma.05g002600.2.p locus=Glyma.05g002600 ID=Glyma.05g002600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGTCGAGAGTTCAACACAAAAATCTGGTTAAGTTTATTGGGGCTTGCAAAGAACCTGTCATGGTTATAGTAACTGAACTTCTATTGGGTGGGACATTGCGCAAATATCTCTTGAATATGCGTCCAAAGTGCTTGGATATGACTGTGGCTATTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGTTTACACTCTCATGGGATCATTCACCGTGATCTTAAACCCGATAACTTGATCTTGACAGATGATCATAAGGCAGTTAAACTTGCTGATTTTGGTCTAGCCAGAGAAGAGTCCTTAACTGAGATGATGACTGCTGAAACAGGAACATATCGTTGGATGGCTCCAGAACTATACAGCACTGTTACTCTAAGACAAGGTGAGAAGAAGCATTACAACCACAAGGTGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAACTCATCCATAATAAGTTACCCTTTGAAGGCATGTCTAATCTACAGGCAGCATATGCAGCTGCTTTTAAGAATACAAGGCCCAGTGCTGAAGACCTTCCTGAGGATTTAGCTCTGATTGTAACTTCATGTTGGAAAGAGGATCCGAATGATCGACCAAATTTCAGTCAAATCATACAGATGCTCCTTCGATATCTCTCCACCGTTTCACCACCAGAACCGGTTGTTCCTCTGCGGATTACTTCATCTGAGAACGCGGTGTTGCCACCAGAATCTCCTGGTACAAGTGCATTAATGCTTGGAAGAGATGGCTCTAGAGAAACCACAACAGCCAAAGGGTTTTTCTTCTGCTTTAACCAGTGTTACTGA

>Glyma.05g002600.3 sequence-type=CDS polypeptide=Glyma.05g002600.3.p locus=Glyma.05g002600 ID=Glyma.05g002600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGTCGAGAGTTCAACACAAAAATCTGGTTAAGTTTATTGGGGCTTGCAAAGAACCTGTCATGGTTATAGTAACTGAACTTCTATTGGGTGGGACATTGCGCAAATATCTCTTGAATATGCGTCCAAAGTGCTTGGATATGACTGTGGCTATTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGTTTACACTCTCATGGGATCATTCACCGTGATCTTAAACCCGATAACTTGATCTTGACAGATGATCATAAGGCAGTTAAACTTGCTGATTTTGGTCTAGCCAGAGAAGAGTCCTTAACTGAGATGATGACTGCTGAAACAGGAACATATCGTTGGATGGCTCCAGAACTATACAGCACTGTTACTCTAAGACAAGGTGAGAAGAAGCATTACAACCACAAGGTGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAACTCATCCATAATAAGTTACCCTTTGAAGGCATGTCTAATCTACAGGCAGCATATGCAGCTGCTTTTAAGAATACAAGGCCCAGTGCTGAAGACCTTCCTGAGGATTTAGCTCTGATTGTAACTTCATGTTGGAAAGAGGATCCGAATGATCGACCAAATTTCAGTCAAATCATACAGATGCTCCTTCGATATCTCTCCACCGTTTCACCACCAGAACCGGTTGTTCCTCTGCGGATTACTTCATCTGAGAACGCGGTGTTGCCACCAGAATCTCCTGGTACAAGTGCATTAATGCTTGGAAGAGATGGCTCTAGAGAAACCACAACAGCCAAAGGGTTTTTCTTCTGCTTTAACCAGTGTTACTGA
Predicted protein sequences of Glyma.05g002600
>Glyma.05g002600.1.p sequence-type=predicted peptide transcript=Glyma.05g002600.1 locus=Glyma.05g002600 ID=Glyma.05g002600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSGNEVHSVGDFNLDSKWLVDPKQLFIGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETLEEISRREARFAREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPKCLDMTVAIGFALDIARAMECLHSHGIIHRDLKPDNLILTDDHKAVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLALIVTSCWKEDPNDRPNFSQIIQMLLRYLSTVSPPEPVVPLRITSSENAVLPPESPGTSALMLGRDGSRETTTAKGFFFCFNQCY*

>Glyma.05g002600.2.p sequence-type=predicted peptide transcript=Glyma.05g002600.2 locus=Glyma.05g002600 ID=Glyma.05g002600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPKCLDMTVAIGFALDIARAMECLHSHGIIHRDLKPDNLILTDDHKAVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLALIVTSCWKEDPNDRPNFSQIIQMLLRYLSTVSPPEPVVPLRITSSENAVLPPESPGTSALMLGRDGSRETTTAKGFFFCFNQCY*

>Glyma.05g002600.3.p sequence-type=predicted peptide transcript=Glyma.05g002600.3 locus=Glyma.05g002600 ID=Glyma.05g002600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPKCLDMTVAIGFALDIARAMECLHSHGIIHRDLKPDNLILTDDHKAVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLALIVTSCWKEDPNDRPNFSQIIQMLLRYLSTVSPPEPVVPLRITSSENAVLPPESPGTSALMLGRDGSRETTTAKGFFFCFNQCY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo