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Report for Sequence Feature Glyma.05g002500

Feature Type:gene_model
Chromosome:Gm05
Start:182081
stop:185308
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g002500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01640.1AT glucuronokinase G JGI N/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0042546GO-bp cell wall biogenesis EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0047940GO-mf glucuronokinase activity EnsemblGenomesN/AIEA
PF00288PFAM GHMP kinases N terminal domain JGI N/AIEA
PF08544PFAM GHMP kinases C terminal JGI N/AIEA
PWY-4841SoyCyc9 UDP-α-D-glucuronate biosynthesis (from myo-inositol) Plant Metabolic Network ISS
GN7V-66860SoyCyc9-rxn glucuronokinase Plant Metabolic Network ISS

Expression Patterns of Glyma.05g002500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.05g002500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g09130 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g002500
>Glyma.05g002500.1 sequence-type=CDS polypeptide=Glyma.05g002500.1.p locus=Glyma.05g002500 ID=Glyma.05g002500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCATTGATAGTGAATACGTGATATCTCACAAGGCCTATGCGAGGGTGGGATTGCTTGGGAACCCGAGCGATGTCTACTACGGCAAAACGATAGCGTTAAGCGTCGCCAACTTCTTCGCCACCGTCACGCTGCGTCCCTCCGACCAGTTAATCCTCCAACCCCACCCCCTCCACGATCTCCTTCATTTCTCATCGCTCCCTCAATTGGTCAACAGGTTGAGCTCCCAAGGTTACTATGGAGGCGTGCGATTGCTTATGGCTATTTGCAATGTCTTCTACGCGTATTGCAGAGAGAACGCCATCGATCTTGGCGACGACAATTTCACTCTCTCCTACGACACCAATATCCCTCGCCAGGCTGGTCTTTCGGGTTCTAGCGGGATCGTGTGTGCTGCGTTGAACTGTTTGTTGGATTTCTACAACGTCAGGCATCTGGTCAAGGTGGAGGTCAGGCCTAACCTCATCCTCGCTGCCGAGAAAGAACTCGGGATTGTGGCCGGTCTTCAGGATCGGGTCGCACAAGTTTACGGTGGCCTTGTTTACATGGACTTTAGCAAGGAAAACATGAATGAGCTGGGCCATGGAGTTTATGTACCAGTGGATTTGAGTCTCCTCCCTCCTCTGTATCTCATCTATGCGGAAAATCCTAGTGATTCTGGCAAGGTTCATAGTAAAGTACGGCAGAGGTGGCTTGATGGTGATGAGTTCATTGTGTCTTCCATGCTTGAAATTGCTAATATCGCCCAAGAAGGAAAGACTGCATTAGAAGAAAAGGACTACTCCAAATTTGCAGCTCTCATGAATCGAAATTTTGACCTGCGAAGGTTAATGTTTGGAGATGATGCCCTCGGTGATTTGAACCTAAAAATGGTAGAGGTTGCCAGAAAGGTTGGAGCTGCGTCAAAATTTACCGGTAGCGGAGGAGCTGTTGTTGCATTTTGTCCTGAGGGGACTTCTCAAGTGAAGCTTCTCGAGGACGAATGTCAAAAAGAAGGATTTGTGATACTACCTATTGAACCTCTTCCTTCTCGTCTAAATGAAATTGACTTGAAAACCTTGCAAATAAAGTAA
Predicted protein sequences of Glyma.05g002500
>Glyma.05g002500.1.p sequence-type=predicted peptide transcript=Glyma.05g002500.1 locus=Glyma.05g002500 ID=Glyma.05g002500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGIDSEYVISHKAYARVGLLGNPSDVYYGKTIALSVANFFATVTLRPSDQLILQPHPLHDLLHFSSLPQLVNRLSSQGYYGGVRLLMAICNVFYAYCRENAIDLGDDNFTLSYDTNIPRQAGLSGSSGIVCAALNCLLDFYNVRHLVKVEVRPNLILAAEKELGIVAGLQDRVAQVYGGLVYMDFSKENMNELGHGVYVPVDLSLLPPLYLIYAENPSDSGKVHSKVRQRWLDGDEFIVSSMLEIANIAQEGKTALEEKDYSKFAALMNRNFDLRRLMFGDDALGDLNLKMVEVARKVGAASKFTGSGGAVVAFCPEGTSQVKLLEDECQKEGFVILPIEPLPSRLNEIDLKTLQIK*






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