SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G38270.2 | AT | galacturonosyltransferase 3 | JGI | N/A | IEA |
| GO:0045489 | GO-bp | pectin biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0071555 | GO-bp | cell wall organization | EnsemblGenomes | N/A | IEA |
| GO:0000139 | GO-cc | Golgi membrane | EnsemblGenomes | N/A | IEA |
| GO:0005768 | GO-cc | endosome | EnsemblGenomes | N/A | IEA |
| GO:0005774 | GO-cc | vacuolar membrane | EnsemblGenomes | N/A | IEA |
| GO:0005794 | GO-cc | Golgi apparatus | EnsemblGenomes | N/A | IEA |
| GO:0005802 | GO-cc | trans-Golgi network | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016757 | GO-mf | transferase activity, transferring glycosyl groups | EnsemblGenomes | N/A | IEA |
| GO:0016757 | GO-mf | transferase activity, transferring glycosyl groups | JGI | N/A | IEA |
| GO:0047262 | GO-mf | polygalacturonate 4-alpha-galacturonosyltransferase activity | EnsemblGenomes | N/A | IEA |
| PTHR13778 | Panther | GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN | JGI | N/A | IEA |
| PTHR13778:SF2 | Panther | GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 2 | JGI | N/A | IEA |
| PF01501 | PFAM | Glycosyl transferase family 8 | JGI | N/A | IEA |
| PWY-1061 | SoyCyc9 | homogalacturonan biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-57851 | SoyCyc9-rxn | polygalacturonate 4-α-galacturonosyltransferase | Plant Metabolic Network | ISS |
|
Glyma.05g001800 not represented in the dataset |
Glyma.05g001800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma05g09200 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.05g001800.1 sequence-type=CDS polypeptide=Glyma.05g001800.1.p locus=Glyma.05g001800 ID=Glyma.05g001800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGACTAATCCACTTCCACTGCCACTTATCTTGTTCGTCTTTTCGCTTTTGTTTTCTGCTCTAGATTCTTCAGACTCCAAATCTTCTCCCCTCCTCTATGACTGTGACCAATGCCATCGCACCAAGGAACGCGATGTTTCTACAACTAGAAGCCGCGATGAAAAGGACGTTGGTATAATTGCAACATACAGTGATTCTGCTTCTGGCCATGTTCGACTCGCTAGGTTGAAAATGAGGGATTTATCTGATTCCTGGATTTGGGAAAACCCTACTCATCAATATCAAAAGACCTCCCGGGAATTCATGGAATCATTTCAAACTGAATCCAATCCCAACCACTCCACAGATGAACATTATCCTGAACAAAGCAGAGTTCAAATTCCCCGTTCCTCATCAATGACTATGACGCCCATGAAGATCAAGCGCCGGGTAATGCGGCAAGACAGAAGGAAAGCTCGTGCAGCTGAACTTACTCGGGAAGACAAAGAAAATGACGATCACATTGTATCAGCAGCAATTGAACACACTGAAGGATTTGATACCACTATCAAGGGAAAGTATGGTATATGGAGGAGAGAATATGAGAACCCAAATTCCGATTCAACGCTGAAACTCATGCAAGATCAAATAATAATGGCCAAAGCTTATGCCAACATTGCAAAGTCTAAGAATAAAATTGTTCTATACGAAGCTCTTATCAAGCACTCCAGAGATAGTCAACAAGCTATAGGAGAAGCCAGTTCTGATACCGAGCTTCACCTTGGAGCACTTGATCGAGCAAAAGCTATGGGTCATGTTCTTTCCATAGCAAAGGACCAACTTTATGACTGCCTTTTGGTGTCAAGGAAGTTAAGGGCAATGCTTCAATCAACTGAAGATAAAGTGAATATACAGAAGAAAAGAAGTGCATTCTTGATTCAGCTGGCTGCAAAAACTGTGCCTAGACCATTGCATTGCCTTCCCCTGCAACTTGCAGCGAATTATTACCTGCAGGGTTATCATAAGAAAGGAAATCTTGACAAAGAAAAGATTGAAGATCCATCTCTTTATCATTATGCCATCTTCTCTGATAATGTACTGGCTGCATCTGTGGTTGTTAATTCTACTGTACAGAATGCAAAGGAACCTGAGAAGCATGTTTTCCATATAGTGACGGATAAATTGAATTTTGCAGCTATGAGAATGTGGTTTCTCATCAACCCTCCTTCTAAAGCAACCATTGAAGTTCAGAATGTTGATGATTTCAAGTGGCTGAATTCCTCATATTGTTCTGTTCTACGTCAGCTTGAATCGGCAAGAATCAAGGAATATTACTTTAAGGCTAATCATCCTTCTTCCCTCTCTGTTGGTTCTGACAATCTAAAATATAGAAATCCTAAATATTTGTCAATGCTAAATCACTTAAGGTTCTACCTTCCTGAAGTTTATCCAAAATTAAACAGAATTCTATTCTTGGATGATGACATTGTAGTGCAGAGAGATTTGACACCTCTTTGGTCAATTGATTTGAAAGGTATGGTGAATGGTGCCGTGGAGACATGCAAGGAGAGTTTCCATAGGTTTGATAAATACCTAAACTTTAGTAATCCACTGATTTCCAACAACTTCAGTCCTGAGGCGTGTGGCTGGGCATTTGGCATGAATATGTTTGACTTGAAGGAGTGGAAGAAACGAAACATCACTGGTATCTATCATCGGTGGCAAGATATGAATGAGGATAGAACCCTCTGGAAGCTTGGAACCTTACCCCCAGGACTAATCACCTTTTATAATCTGACCTATCCGTTAGATCGAGGCTGGCATGTTTTGGGACTTGGCTATGACCCGGCTCTGAACCTAACAGAGATAGAGAATGGCGCTGTCATTCACTACAATGGAAACTACAAGCCATGGTTGAATCTTGCTGTTTCCAAATATAAATCGTACTGGTCCAGATATGTTATGTTCGATAATCCATATCTTCGAGTTTGCAACCTTAGCGAATAG
>Glyma.05g001800.1.p sequence-type=predicted peptide transcript=Glyma.05g001800.1 locus=Glyma.05g001800 ID=Glyma.05g001800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 METNPLPLPLILFVFSLLFSALDSSDSKSSPLLYDCDQCHRTKERDVSTTRSRDEKDVGIIATYSDSASGHVRLARLKMRDLSDSWIWENPTHQYQKTSREFMESFQTESNPNHSTDEHYPEQSRVQIPRSSSMTMTPMKIKRRVMRQDRRKARAAELTREDKENDDHIVSAAIEHTEGFDTTIKGKYGIWRREYENPNSDSTLKLMQDQIIMAKAYANIAKSKNKIVLYEALIKHSRDSQQAIGEASSDTELHLGALDRAKAMGHVLSIAKDQLYDCLLVSRKLRAMLQSTEDKVNIQKKRSAFLIQLAAKTVPRPLHCLPLQLAANYYLQGYHKKGNLDKEKIEDPSLYHYAIFSDNVLAASVVVNSTVQNAKEPEKHVFHIVTDKLNFAAMRMWFLINPPSKATIEVQNVDDFKWLNSSYCSVLRQLESARIKEYYFKANHPSSLSVGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLNRILFLDDDIVVQRDLTPLWSIDLKGMVNGAVETCKESFHRFDKYLNFSNPLISNNFSPEACGWAFGMNMFDLKEWKKRNITGIYHRWQDMNEDRTLWKLGTLPPGLITFYNLTYPLDRGWHVLGLGYDPALNLTEIENGAVIHYNGNYKPWLNLAVSKYKSYWSRYVMFDNPYLRVCNLSE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
