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Report for Sequence Feature Glyma.05g000300

Feature Type:gene_model
Chromosome:Gm05
Start:21269
stop:22280
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05g000300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G08410.1AT ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 JGI N/AIEA
GO:0009107GO-bp lipoate biosynthetic process EnsemblGenomesN/AIEA
GO:0009249GO-bp protein lipoylation EnsemblGenomesN/AIEA
GO:0015979GO-bp photosynthesis EnsemblGenomesN/AIEA
GO:0015979GO-bp photosynthesis JGI N/AIEA
GO:0016992GO-mf lipoate synthase activity EnsemblGenomesN/AIEA
PTHR10949Panther LIPOYL SYNTHASE JGI N/AIEA
PTHR10949:SF1Panther JGI N/AIEA
PF02941PFAM Ferredoxin thioredoxin reductase variable alpha chain JGI N/AIEA
GN7V-67232SoyCyc9-rxn ferredoxin:thioredoxin reductase Plant Metabolic Network ISS

Expression Patterns of Glyma.05g000300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05g000300 not represented in the dataset
Glyma.05g000300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05g000300
ParalogEvidenceComments
Glyma.19g000200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05g000300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g09390 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05g000300
>Glyma.05g000300.1 sequence-type=CDS polypeptide=Glyma.05g000300.1.p locus=Glyma.05g000300 ID=Glyma.05g000300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCGGCGCCAGCAGCACTATAAGGCTATCGCCGATGGTGAGCGTGTCCCCGAATTGCAATTGCTCATCGATGATGGTGATGAAGAAGACGACGACGGCGGTGGCTCCTTTGTGGATGAAAAGCAAGAGCGCTAGGGGTGGTATTAGGTGCGAGGTGGCTATTAATGCGGTGGATGAGTCGACGACGTCACCGGAGTCGAAGATTGGAGCGCGTGTGAAGGTGAAGGCGGGTGTAAAGGTGTACCACGTCCCCAAAGTAGCCGAGCTTGACCTCACGGGTCTGGAAGGCGAGATCAAGCAGTATGTTGGCCTCTGGAACGGTAAGCGAATCTCCGCCAATCTTCCTTACAAGGTTCAGTTTCTCACCGACATCCCAGCTCGTGGTCCTGTCAAGTTTTTTGCCCACCTCAAGGAAGATGAATTCGACTATCTTTAG
Predicted protein sequences of Glyma.05g000300
>Glyma.05g000300.1.p sequence-type=predicted peptide transcript=Glyma.05g000300.1 locus=Glyma.05g000300 ID=Glyma.05g000300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGASSTIRLSPMVSVSPNCNCSSMMVMKKTTTAVAPLWMKSKSARGGIRCEVAINAVDESTTSPESKIGARVKVKAGVKVYHVPKVAELDLTGLEGEIKQYVGLWNGKRISANLPYKVQFLTDIPARGPVKFFAHLKEDEFDYL*






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