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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G02750.1 | AT | Tetratricopeptide repeat (TPR)-like superfamily protein | JGI | N/A | IEA |
| GO:0009451 | GO-bp | RNA modification | EnsemblGenomes | N/A | IEA |
| GO:0090305 | GO-bp | nucleic acid phosphodiester bond hydrolysis | EnsemblGenomes | N/A | IEA |
| GO:0043231 | GO-cc | intracellular membrane-bounded organelle | EnsemblGenomes | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
| GO:0004519 | GO-mf | endonuclease activity | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | EnsemblGenomes | N/A | IEA |
| PTHR24015 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
| PTHR24015:SF42 | Panther | JGI | N/A | IEA | |
| PF01535 | PFAM | PPR repeat | JGI | N/A | IEA |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| PPR47 | Psudo-Response Regulator gene 47 |
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Glyma.05G244400 not represented in the dataset |
Glyma.05G244400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g244400 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma05g34000 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.05g244400.1 sequence-type=CDS polypeptide=Glyma.05g244400.1.p locus=Glyma.05g244400 ID=Glyma.05g244400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAACAGCTTCAATATAATGCAATTCAAGTATGTTGTGAGACACTTGCGTATGCGCAACTCACGTTGTCTGTGTACGAATAATTATTATAGGAGTAAGAGACGAAGCACGAACAGCTACTCTCCATCCTCTGTCAAATTCAAAGACCCTGACATTGTTACATGGAACAAAGCCATTTCTTCCCACATGCGCAACGGCCACTGCGACTCCGCTCTCCGTGTCTTCAACTCCATGCCTCGCCGGAGCTCTGTCTCCTACAACGCCATGATATCTGGGTACTTGAGGAACGCCAAGTTCTCCCTCGCAAGGGACCTGTTTGATAAAATGCCTGAGAGGGACTTGTTTTCCTGGAATGTTATGCTCACTGGATATGTCAGGAACCGCAGGCTCGGCGAGGCCCACAAGTTGTTTGATCTAATGCCCAAAAAGGATGTTGTTTCCTGGAATGCCATGTTGTCTGGGTATGCCCAGAATGGGTTTGTTGATGAGGCAAGGGAGGTTTTCAATAAGATGCCTCATAGGAATTCCATCTCCTGGAATGGGCTGCTTGCAGCTTATGTTCATAATGGGAGACTCAAGGAGGCACGTCGCTTGTTTGAGTCCCAATCAAACTGGGAATTGATTTCTTGGAATTGTTTGATGGGCGGGTATGTGAAGAGAAACATGTTGGGTGATGCTAGGCAGCTTTTTGACCGAATGCCTGTTAGGGATGTCATCTCCTGGAACACTATGATTTCCGGTTATGCCCAGGTTGGAGATTTGTCTCAAGCTAAGAGGTTGTTCAATGAATCTCCAATTCGGGATGTGTTCACATGGACAGCGATGGTGTCTGGATATGTGCAGAATGGAATGGTGGATGAAGCAAGAAAATATTTTGATGAAATGCCTGTTAAAAATGAAATTTCTTACAATGCAATGCTTGCGGGCTATGTGCAATACAAAAAAATGGTCATTGCAGGGGAGTTGTTTGAGGCAATGCCTTGTCGGAATATAAGTTCATGGAATACCATGATTACCGGCTATGGTCAGAATGGTGGTATAGCTCAAGCTAGGAAATTGTTTGATATGATGCCTCAGCGCGATTGTGTATCTTGGGCGGCTATTATTTCTGGTTATGCTCAGAATGGTCACTATGAAGAGGCTCTAAACATGTTTGTTGAGATGAAACGAGATGGGGAAAGTTCAAATAGGTCTACTTTTAGTTGTGCTTTGAGCACATGTGCCGATATTGCTGCCTTGGAGTTAGGGAAGCAAGTTCATGGGCAGGTGGTGAAGGCAGGATTTGAGACTGGGTGTTTTGTGGGAAATGCACTTCTTGGGATGTATTTTAAATGTGGCAGCACAGATGAGGCTAATGATGTGTTTGAAGGAATAGAGGAGAAAGATGTCGTCTCTTGGAACACAATGATTGCTGGTTATGCTAGGCATGGATTTGGCAGACAGGCTTTAGTTTTATTTGAGTCAATGAAGAAAGCAGGTGTTAAACCTGATGAGATTACAATGGTTGGTGTTCTGTCTGCTTGTAGTCACTCTGGCTTGATAGACAGGGGAACTGAATACTTTTATTCAATGGATAGGGATTACAATGTAAAACCAACTTCAAAACATTATACTTGCATGATTGATCTTCTTGGAAGAGCTGGCCGCCTGGAAGAAGCAGAGAATTTAATGAGAAACATGCCTTTTGACCCAGGTGCTGCATCATGGGGAGCTCTACTAGGTGCAAGCCGGATTCACGGCAATACTGAACTGGGTGAGAAGGCTGCTGAGATGGTTTTTAAGATGGAACCTCAGAACTCAGGGATGTATGTCCTTCTTTCAAATCTATATGCAGCTTCTGGCAGGTGGGTTGATGTTGGCAAGATGAGATCAAAAATGAGGGAAGCTGGTGTGCAGAAAGTAACTGGATATAGTTGGGTTGAGGTACAAAACAAGATTCATACATTCTCGGTTGGGGATTGTTTCCACCCAGAAAAGGATAGAATATATGCCTTCTTAGAAGAGCTAGATTTGAAAATGAGGCGTGAGGGGTATGTTTCTTCAACAAAACTGGTTTTGCATGATGTGGAAGAGGAAGAAAAGGAGCATATGCTCAAGTATCACAGTGAGAAATTAGCTGTAGCATTTGGAATTCTGACTATACCAGCTGGCAGACCAATACGCGTCATGAAAAACTTGCGTGTTTGTCAAGACTGTCATAATGCCATCAAACACATATCCAAGATTGTTGGAAGGTTGATAATCTTAAGGGATTCTCACCGCTTTCACCACTTCAGTGAGGGTATTTGTTCCTGTGGGGATTATTGGTAA
>Glyma.05g244400.1.p sequence-type=predicted peptide transcript=Glyma.05g244400.1 locus=Glyma.05g244400 ID=Glyma.05g244400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MNSFNIMQFKYVVRHLRMRNSRCLCTNNYYRSKRRSTNSYSPSSVKFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSCGDYW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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