Glyma.05G240800

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Report for Sequence Feature Glyma.05G240800

Feature Type:	gene_model
Chromosome:	Gm05
Start:	41579557
stop:	41582577
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05G240800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47640.1	AT	Small nuclear ribonucleoprotein family protein	JGI	N/A	IEA
AT3G62840.2	AT	Small nuclear ribonucleoprotein family protein	JGI	N/A	IEA
GO:0000387	GO-bp	spliceosomal snRNP assembly	EnsemblGenomes	N/A	IEA
GO:0008380	GO-bp	RNA splicing	EnsemblGenomes	N/A	IEA
GO:0005682	GO-cc	U5 snRNP	EnsemblGenomes	N/A	IEA
GO:0005685	GO-cc	U1 snRNP	EnsemblGenomes	N/A	IEA
GO:0005686	GO-cc	U2 snRNP	EnsemblGenomes	N/A	IEA
GO:0030532	GO-cc	small nuclear ribonucleoprotein complex	EnsemblGenomes	N/A	IEA
GO:0046540	GO-cc	U4/U6 x U5 tri-snRNP complex	EnsemblGenomes	N/A	IEA
GO:0071011	GO-cc	precatalytic spliceosome	EnsemblGenomes	N/A	IEA
GO:0071013	GO-cc	catalytic step 2 spliceosome	EnsemblGenomes	N/A	IEA
KOG3459	KOG	Small nuclear ribonucleoprotein (snRNP) Sm core protein	JGI	N/A	IEA
PTHR12777	Panther	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2	JGI	N/A	IEA
PF01423	PFAM	LSM domain	JGI	N/A	IEA

Expression Patterns of Glyma.05G240800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05G240800 not represented in the dataset	Glyma.05G240800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.05G240800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g240800	Wm82.a4.v1	ISS	As supplied by JGI
Glyma05g34410	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.05G240800

Limit To All Plant Sequences

>Glyma.05g240800.2 sequence-type=transcript locus=Glyma.05g240800 ID=Glyma.05g240800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTCCTTTAAGAGTAATATAGCCCTTACTTACCAATTGAGAGATTGAGATGTGCCAAATGAATAGATGGAGCCTCCTCCAATAGTTGAAGCCTTCTATGAGGAAAAGGGTAATTTTGGAAACAACTTACATGTTAATATTGACAGACAGCAAGCACATTTCACATTATACTTAGATCTTCTTCCTTCACTCAATCAAGTTTTGACTTTATTTGGAGTTTCTCCAAAATGAGCCGGCCAATGGAGGAAGATACTGTGGGTAAGAATGAGGAAGAGGAGTTCAACACTGGACCGCTGTCCGTACTCATGATGAGTGTTAAAAATAATACTCAGGTACTGATAAATTGTCGGAACAACAAAAAGCTTCTGGGTCGTGTAAGGGCTTTTGATAGGCACTGCAACATGGTTCTTGAAAATGTGAGGGAGATGTGGACTGAGGTGCCAAAAACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGATAGATTCATCAGCAAGATGTTCCTCCGTGGAGATTCTGTCATCATTGTTCTTAGGAATCCCAAATGAGATTCTATCATCAATTATTCGCGTAGACATTAGCGGAGGATGTAGTTGGTCATTTGATGAGGACGCCCTGGATCTTTTATGTACCCATTAACGTGTACATCTAATGTTTTGTATGGATTAAAATGTAAAGTTTTATTTGTTTTTTTTTTTGTTCTTGCGTAATTATGCTGGATTATTGAATATTGAAGGAGATTATCAGTTTGATCCTTCGATATCACCCTCTTTCTTGTTTTATTTTTTTAAGTAATAAGATTATATATATAGTTTTTAAGTATTGAATATTTATTAAATCCCTATGTTAACATATTTGTATTTGCGTTT

>Glyma.05g240800.3 sequence-type=transcript locus=Glyma.05g240800 ID=Glyma.05g240800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TACGCTTTACTATCTTTGCCAAGTTAACATACTTCATTTTACAGACTGTGGGTAAGAATGAGGAAGAGGAGTTCAACACTGGACCGCTGTCCGTACTCATGATGAGTGTTAAAAATAATACTCAGGTACTGATAAATTGTCGGAACAACAAAAAGCTTCTGGGTCGTGTAAGGGCTTTTGATAGGCACTGCAACATGGTTCTTGAAAATGTGAGGGAGATGTGGACTGAGGTGCCAAAAACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGATAGATTCATCAGCAAGATGTTCCTCCGTGGAGATTCTGTCATCATTGTTCTTAGGAATCCCAAATGAGATTCTATCATCAATTATTCGCGTAGACATTAGCGGAGGATGTAGTTGGTCATTTGATGAGGACGCCCTGGATCTTTTATGTACCCATTAACGTGTACATCTAATGTTTTGTATGGATTAAAATGTAAAGTTTTATTTGTTTTTTTTTTTGTTCTTGCGTAATTATGCTGGATTATTGAATATTGAAGGAGATTATCAGTTTGATCCTTCGATATCACCCTCTTTCTTGTTTTATTTTTTTAAGTAATAAGATTATATATATAGTTTTTAAGTATTGAATATTTATTAAATCCCTATGTTAACATATTTGTATTTGCGTTT

Coding sequences of Glyma.05G240800

Limit To All Plant Sequences

>Glyma.05g240800.1 sequence-type=CDS polypeptide=Glyma.05g240800.1.p locus=Glyma.05g240800 ID=Glyma.05g240800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCCGGCCAATGGAGGAAGATACTGTGGGTAAGAATGAGGAAGAGGAGTTCAACACTGGACCGCTGTCCGTACTCATGATGAGTGTTAAAAATAATACTCAGGTACTGATAAATTGTCGGAACAACAAAAAGCTTCTGGGTCGTGTAAGGGCTTTTGATAGGCACTGCAACATGGTTCTTGAAAATGTGAGGGAGATGTGGACTGAGGTGCCAAAAACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGATAGATTCATCAGCAAGATGTTCCTCCGTGGAGATTCTGTCATCATTGTTCTTAGGAATCCCAAATGA

>Glyma.05g240800.2 sequence-type=CDS polypeptide=Glyma.05g240800.2.p locus=Glyma.05g240800 ID=Glyma.05g240800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCCGGCCAATGGAGGAAGATACTGTGGGTAAGAATGAGGAAGAGGAGTTCAACACTGGACCGCTGTCCGTACTCATGATGAGTGTTAAAAATAATACTCAGGTACTGATAAATTGTCGGAACAACAAAAAGCTTCTGGGTCGTGTAAGGGCTTTTGATAGGCACTGCAACATGGTTCTTGAAAATGTGAGGGAGATGTGGACTGAGGTGCCAAAAACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGATAGATTCATCAGCAAGATGTTCCTCCGTGGAGATTCTGTCATCATTGTTCTTAGGAATCCCAAATGA

>Glyma.05g240800.3 sequence-type=CDS polypeptide=Glyma.05g240800.3.p locus=Glyma.05g240800 ID=Glyma.05g240800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGAGTGTTAAAAATAATACTCAGGTACTGATAAATTGTCGGAACAACAAAAAGCTTCTGGGTCGTGTAAGGGCTTTTGATAGGCACTGCAACATGGTTCTTGAAAATGTGAGGGAGATGTGGACTGAGGTGCCAAAAACTGGTAAAGGAAAGAAAAAGGCCCAGCCAGTCAACAAGGATAGATTCATCAGCAAGATGTTCCTCCGTGGAGATTCTGTCATCATTGTTCTTAGGAATCCCAAATGA

Predicted protein sequences of Glyma.05G240800

Limit To All Plant Sequences

>Glyma.05g240800.1.p sequence-type=predicted peptide transcript=Glyma.05g240800.1 locus=Glyma.05g240800 ID=Glyma.05g240800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSRPMEEDTVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*

>Glyma.05g240800.2.p sequence-type=predicted peptide transcript=Glyma.05g240800.2 locus=Glyma.05g240800 ID=Glyma.05g240800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSRPMEEDTVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*

>Glyma.05g240800.3.p sequence-type=predicted peptide transcript=Glyma.05g240800.3 locus=Glyma.05g240800 ID=Glyma.05g240800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*

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