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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G61840.1 | AT | Exostosin family protein | JGI | N/A | IEA |
| GO:0006486 | GO-bp | protein glycosylation | EnsemblGenomes | N/A | IEA |
| GO:0009834 | GO-bp | plant-type secondary cell wall biogenesis | EnsemblGenomes | N/A | IEA |
| GO:0010417 | GO-bp | glucuronoxylan biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0042546 | GO-bp | cell wall biogenesis | EnsemblGenomes | N/A | IEA |
| GO:0045492 | GO-bp | xylan biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0005768 | GO-cc | endosome | EnsemblGenomes | N/A | IEA |
| GO:0005794 | GO-cc | Golgi apparatus | EnsemblGenomes | N/A | IEA |
| GO:0005802 | GO-cc | trans-Golgi network | EnsemblGenomes | N/A | IEA |
| GO:0016757 | GO-mf | transferase activity, transferring glycosyl groups | EnsemblGenomes | N/A | IEA |
| GO:0047517 | GO-mf | 1,4-beta-D-xylan synthase activity | EnsemblGenomes | N/A | IEA |
| GO:0080116 | GO-mf | glucuronoxylan glucuronosyltransferase activity | EnsemblGenomes | N/A | IEA |
| KOG1021 | KOG | Acetylglucosaminyltransferase EXT1/exostosin 1 | JGI | N/A | IEA |
| PTHR11062 | Panther | EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED | JGI | N/A | IEA |
| PTHR11062:SF24 | Panther | JGI | N/A | IEA | |
| PF03016 | PFAM | Exostosin family | JGI | N/A | IEA |
| PWY-5980 | SoyCyc9 | xylogalacturonan biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-49453 | SoyCyc9-rxn | xylogalacturonan β-1,3-xylosyltransferase | Plant Metabolic Network | ISS |
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Glyma.05G199900 not represented in the dataset |
Glyma.05G199900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g199900 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma05g33420 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.05g199900.1 sequence-type=CDS polypeptide=Glyma.05g199900.1.p locus=Glyma.05g199900 ID=Glyma.05g199900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGTGTGTCGAAATTGGGTTTTTTGGGGCTTCTTTTTGCTGATTTTCTCTTTGCAGTTGGAGCTGTGGAGCTGGGCAGGAACCAACCCACTGAAAGAATTTCAGGTAGTGCTGGTGATGTATTGGAAGATGATCCAGTGGGAAGGTTGAAGGTTTTTGTTTATGAACTTCCAAGTAAATATAATAAGAAAATTCTGCAAAAGGATCCAAGATGTCTCAACCATATGTTTGCTGCTGAAATCTTTATGCACCGGTTTCTCTTATCCAGCCCTGTCCGAACCCTTAATCCTGAAGAAGCTGATTGGTTTTATACCCCTGTATACACCACTTGTGACTTGACACCAAATGGCCTCCCTTTACCCTTTAAGTCACCACGAATGATGAGAAGTGCTATACAGCTTATTTCTTCAAACTGGCCTTATTGGAACCGGACAGAGGGGGCTGATCACTTCTTTGTGGTTCCTCATGACTTTGGGGCATGTTTCCATTACCAGGAAGAGAAGGCAATTGAAAGAGGGATTCTTACACTACTACGGCGTGCTACCTTGGTTCAAACATTTGGACAGAGAAATCATGTGTGCTTGAAAGAGGGCTCGATTACCATCCCTCCGTATGCTCCACCACAGAAAATGCATACCCACCTAATTCCTGACAAGACTCCCAGGTCCATTTTTGTATACTTCCGAGGACTCTTTTATGATGTTGGCAATGACCCTGAAGGTGGTTACTATGCAAGAGGCGCAAGAGCAGCAGTGTGGGAGAACTTTAAGGACAATCTGCTGTTTGACATCTCCACTGAGCATCCAACCACTTACTACGAGGACATGCAAAGAGCCGTGTTTTGTCTGTGCCCACTTGGATGGGCCCCTTGGAGCCCAAGATTGGTAGAAGCTGTGATATTTGGTTGCATCCCTGTTATTATTGCAGATGACATTGTTCTTCCATTCGCTGATGCAATCCCATGGGAAGAGATAGGGGTGTTTGTTGATGAGGAGGATGTTCCCAAGTTGGATACAATACTCACATCTATCCCACCAGAAGTCATATTAAGGAAACAGAGATTGCTTGCTAACCCTTCCATGAAGCAAGCAATGCTTTTCCCACAGCCTGCTCAACCCGGAGACGCGTTCCATCAAGTTTTAAATGGACTTGCACGTAAGCTGCCTCACGACAACACCGTGTTCTTGAAACCAGGGGAGAAGATCTTGAATTGGACTGCTGGACCTGTGGGAGACCTTAAACCTTGGTAA
>Glyma.05g199900.1.p sequence-type=predicted peptide transcript=Glyma.05g199900.1 locus=Glyma.05g199900 ID=Glyma.05g199900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGVSKLGFLGLLFADFLFAVGAVELGRNQPTERISGSAGDVLEDDPVGRLKVFVYELPSKYNKKILQKDPRCLNHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPVYTTCDLTPNGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILTLLRRATLVQTFGQRNHVCLKEGSITIPPYAPPQKMHTHLIPDKTPRSIFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKDNLLFDISTEHPTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFVDEEDVPKLDTILTSIPPEVILRKQRLLANPSMKQAMLFPQPAQPGDAFHQVLNGLARKLPHDNTVFLKPGEKILNWTAGPVGDLKPW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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