SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.05G169000): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.05G169000): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.05G169000

Feature Type:gene_model
Chromosome:Gm05
Start:35947897
stop:35955765
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05G169000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G61000.1AT JGI N/AIEA
GO:0000278GO-bp mitotic cell cycle EnsemblGenomesN/AIEA
GO:0000775GO-cc chromosome, centromeric region EnsemblGenomesN/AIEA
GO:0000775GO-cc chromosome, centromeric region JGI N/AIEA
GO:0000776GO-cc kinetochore EnsemblGenomesN/AIEA
GO:0031262GO-cc Ndc80 complex EnsemblGenomesN/AIEA
KOG4438 KOG Centromere-associated protein NUF2 JGI N/AIEA
PTHR21650Panther MEMBRALIN/KINETOCHORE PROTEIN NUF2 JGI N/AIEA
PTHR21650:SF2Panther KINETOCHORE PROTEIN NUF2 JGI N/AIEA
PF03800PFAM Nuf2 family JGI N/AIEA

Expression Patterns of Glyma.05G169000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05G169000 not represented in the dataset
Glyma.05G169000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.05G169000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g169000 Wm82.a4.v1ISS As supplied by JGI
Glyma05g30280 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05G169000
>Glyma.05g169000.2 sequence-type=transcript locus=Glyma.05g169000 ID=Glyma.05g169000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAGTCGAGGTTGCGTTTGGACTTTGGAGAAGAAGAAAATGGCGGAGTCGAATTACGAGTACCCAAGGCTACGGCGGCCGGAAATAGTCACAATCCTAGCGCAGTTGCAGATCGCGAACGTGACCGAGCAGGACTTCACCAACCCTAACCCTGATTTCATCTCCGATCTCTACACTCGCGTCCTCATTCATCTCGACATTCTCCTCGAGGAAGACAACGAGCAACTCGAGTTCCACGCCCTAGAGCATCTTGAAAACCCTGATTTCCACCTGGATTCCGTTCGCGCCGTGAAACTCTACAACCAGATCAACGAGGTTCTCACGACACTCGAGTGTCCGCGCAAATTCACCCTCGCCGATCTTCTCATGCCGGATCCTCACCGAACCGACCTCTTCCTTGGCTCTCTTCTCAATTTTTGTCTCGATAGGGACGCGAGAATGAACTCCGTCTCGGAAATTGTGGAGGAAGTGAACGCTCTAGAGGCGCAGCGAACGGAGTTGGAGGAGAATAGGATTTTGCAGTTGAAAGCGGAAATTTCGGAATGCAATGAGGCGAAGGAGAGGGAGATGCCTCTTGTTGAGGAGGTGGAGGCCAAAGTTAAAGAGCTCAAGCAAACGATTGCGGTGCTGAACAGCAACCAGAGTTCTCTGAGAAGTACTTTGAGGAAGTTGAAGGAGAAGACCGGGGAAACGGATGAGAAGATTTCAAATGCTGAATTTACATTGGTACAAAATGTCCAAGAAAATGCAAATCTACGTTCAAAAATCAGTCAATCACCTGATAAAGTACAGAGGGCTTTAGAGGAAAAGAAATTAGCTCGTGAGGAGGCAAGGAATGCTGAAAGATTAGCAATGCAAGCTTTTCATGAGAAGACTGCCCTTGTTGAAGTTTTTTCCAAGGTGTACAAGAAAATGTCAAAACACAACAAGCTGATGCAGGATATACAAGAACAGGTAAATTCTGCTAAATCTATTGAAAAGGATCTTAAAGCATTGAAGGCTAAACTTAGTGATGAAGAAATATTGGAGAAGTCACTTGAGGCCAAATTGGTTGAAAAACAGAGTAAAGGTATGTTCTTGTGCAAGCATTGCTGTGTCTCCATTTCTGGCTACATGGTTTAAGAATGAGTAATGATAATTTTTACGAAACACATTCTGTAAAACCTGTTCACAAGTAACCTGCATGATTTTTGTCCAATAATTTTGTTTTCCTTTTAAATAGCATTTGGTGATTGAAAACCAGCACATTTGTACGCCACATTATTTTTTAATGATTTTTGTTGAAAACTTTCATGCTACATAGAACTGCTCTTTAAGCATGAATATTTGTTACTACTAGCATGTTTTACCTCCAACTTTTTCGACTTGTTTTTCCTTAGTTGAGCAGATGGAAGAATCGAGGAAGCAATTGGAGAAAGAGTCCAATATTATGTGGGAAGAAGCAACTAAATACTTAAGTAGTACGAAATCAGATGTTGAATCTAAGAGATCTGCTACAGAAACAAGGCAGAAAAATGTTGAGGCTGTTTTATCTGAGGTGGCATTTCTTAAGGTTCATGATATATCAATTATATGTGGTGAATGAATAAATTGTTATTTCTTATCTGCAATTGACAGGTGGATGCCATAAGTAGTAAAATTATATCAGTAAAAGAAGCTGGAGCAGTTAAAGTGGCACTGTTAGTGCGCAAATGTGAAGAGCTAGTAGAAGCGTTTCACAACTATGCGAATCCGATTGCACGCGTGATTGAATCTGAGCAAAGAAGACTCGGGGCCACTAAAGGAGGTGGATTTGGCATTTCAGATCCGGTTTAATCATGTATAGACTACTACCAAAAATCAAATTATACTAGAGTGTTTATTTATTTATTTGACACAGCTAGAGTGCATAGTTTAGTTGAGTACATGTTAGCATGAAAAATCTGGAAGAATTTTTGCAGAGGTTATGCCTCAATCACATCGACATCTTGCTGCAGAATTGTGTAGTGCCTATTCTGTTCACCCTGTTTCTTCCATTCTTAGCCCAATAGTTGAATCAATGTGTTGTTTCCTGTGATGGTTTGCTCTATATGTGAATATGCCTCTAATTGAATGAAAATTTGCCATGCGTAATGTATCattctatttaattttt

>Glyma.05g169000.3 sequence-type=transcript locus=Glyma.05g169000 ID=Glyma.05g169000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCGAGTCGAGGTTGCGTTTGGACTTTGGAGAAGAAGAAAATGGCGGAGTCGAATTACGAGTACCCAAGGCTACGGCGGCCGGAAATAGTCACAATCCTAGCGCAGTTGCAGATCGCGAACGTGACCGAGCAGGACTTCACCAACCCTAACCCTGATTTCATCTCCGATCTCTACACTCGCGTCCTCATTCATCTCGACATTCTCCTCGAGGAAGACAACGAGCAACTCGAGTTCCACGCCCTAGAGCATCTTGAAAACCCTGATTTCCACCTGGATTCCGTTCGCGCCGTGAAACTCTACAACCAGATCAACGAGGTTCTCACGACACTCGAGTGTCCGCGCAAATTCACCCTCGCCGATCTTCTCATGCCGGATCCTCACCGAACCGACCTCTTCCTTGGCTCTCTTCTCAATTTTTGTCTCGATAGGGACGCGAGAATGAACTCCGTCTCGGAAATTGTGGAGGAAGTGAACGCTCTAGAGGCGCAGCGAACGGAGTTGGAGGAGAATAGGATTTTGCAGTTGAAAGCGGAAATTTCGGAATGCAATGAGGCGAAGGAGAGGGAGATGCCTCTTGTTGAGGAGGTGGAGGCCAAAGTTAAAGAGCTCAAGCAAACGATTGCGGTGCTGAACAGCAACCAGAGTTCTCTGAGAAGTACTTTGAGGAAGTTGAAGGAGAAGACCGGGGAAACGGATGAGAAGATTTCAAATGCTGAATTTACATTGGTACAAAATGTCCAAGAAAATGCAAATCTACGTTCAAAAATCAGTCAATCACCTGATAAAGTACAGAGGGCTTTAGAGGAAAAGAAATTAGCTCGTGAGGAGGCAAGGAATGCTGAAAGATTAGCAATGCAAGCTTTTCATGAGAAGACTGCCCTTGTTGAAGTTTTTTCCAAGTTGTCAATTAGTTGGTGCTGTTGCTGAAGCTGGATTGGGCTTATGCAAGCTGAATTTTCCCTTGAATATTGACTGGAAGATCAAATGCCAATGTGGATTGACTGATGGAATTTGCCATGCATACTGTGGGTTCATTCTGTCGTATCTACAATACTTGAATAATTTATGCACTGATATTCTGGACATTTTTTTACTCATTATTTCAGAAGGCAAGCTACAATGTAA
Coding sequences of Glyma.05G169000
>Glyma.05g169000.1 sequence-type=CDS polypeptide=Glyma.05g169000.1.p locus=Glyma.05g169000 ID=Glyma.05g169000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGAGTCGAATTACGAGTACCCAAGGCTACGGCGGCCGGAAATAGTCACAATCCTAGCGCAGTTGCAGATCGCGAACGTGACCGAGCAGGACTTCACCAACCCTAACCCTGATTTCATCTCCGATCTCTACACTCGCGTCCTCATTCATCTCGACATTCTCCTCGAGGAAGACAACGAGCAACTCGAGTTCCACGCCCTAGAGCATCTTGAAAACCCTGATTTCCACCTGGATTCCGTTCGCGCCGTGAAACTCTACAACCAGATCAACGAGGTTCTCACGACACTCGAGTGTCCGCGCAAATTCACCCTCGCCGATCTTCTCATGCCGGATCCTCACCGAACCGACCTCTTCCTTGGCTCTCTTCTCAATTTTTGTCTCGATAGGGACGCGAGAATGAACTCCGTCTCGGAAATTGTGGAGGAAGTGAACGCTCTAGAGGCGCAGCGAACGGAGTTGGAGGAGAATAGGATTTTGCAGTTGAAAGCGGAAATTTCGGAATGCAATGAGGCGAAGGAGAGGGAGATGCCTCTTGTTGAGGAGGTGGAGGCCAAAGTTAAAGAGCTCAAGCAAACGATTGCGGTGCTGAACAGCAACCAGAGTTCTCTGAGAAGTACTTTGAGGAAGTTGAAGGAGAAGACCGGGGAAACGGATGAGAAGATTTCAAATGCTGAATTTACATTGGTACAAAATGTCCAAGAAAATGCAAATCTACGTTCAAAAATCAGTCAATCACCTGATAAAGTACAGAGGGCTTTAGAGGAAAAGAAATTAGCTCGTGAGGAGGCAAGGAATGCTGAAAGATTAGCAATGCAAGCTTTTCATGAGAAGACTGCCCTTGTTGAAGTTTTTTCCAAGGTGTACAAGAAAATGTCAAAACACAACAAGCTGATGCAGGATATACAAGAACAGGTAAATTCTGCTAAATCTATTGAAAAGGATCTTAAAGCATTGAAGGCTAAACTTAGTGATGAAGAAATATTGGAGAAGTCACTTGAGGCCAAATTGGTTGAAAAACAGAGTAAAGTTGAGCAGATGGAAGAATCGAGGAAGCAATTGGAGAAAGAGTCCAATATTATGTGGGAAGAAGCAACTAAATACTTAAGTAGTACGAAATCAGATGTTGAATCTAAGAGATCTGCTACAGAAACAAGGCAGAAAAATGTTGAGGCTGTTTTATCTGAGGTGGATGCCATAAGTAGTAAAATTATATCAGTAAAAGAAGCTGGAGCAGTTAAAGTGGCACTGTTAGTGCGCAAATGTGAAGAGCTAGTAGAAGCGTTTCACAACTATGCGAATCCGATTGCACGCGTGATTGAATCTGAGCAAAGAAGACTCGGGGCCACTAAAGGAGGTGGATTTGGCATTTCAGATCCGGTTTAA

>Glyma.05g169000.2 sequence-type=CDS polypeptide=Glyma.05g169000.2.p locus=Glyma.05g169000 ID=Glyma.05g169000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGAGTCGAATTACGAGTACCCAAGGCTACGGCGGCCGGAAATAGTCACAATCCTAGCGCAGTTGCAGATCGCGAACGTGACCGAGCAGGACTTCACCAACCCTAACCCTGATTTCATCTCCGATCTCTACACTCGCGTCCTCATTCATCTCGACATTCTCCTCGAGGAAGACAACGAGCAACTCGAGTTCCACGCCCTAGAGCATCTTGAAAACCCTGATTTCCACCTGGATTCCGTTCGCGCCGTGAAACTCTACAACCAGATCAACGAGGTTCTCACGACACTCGAGTGTCCGCGCAAATTCACCCTCGCCGATCTTCTCATGCCGGATCCTCACCGAACCGACCTCTTCCTTGGCTCTCTTCTCAATTTTTGTCTCGATAGGGACGCGAGAATGAACTCCGTCTCGGAAATTGTGGAGGAAGTGAACGCTCTAGAGGCGCAGCGAACGGAGTTGGAGGAGAATAGGATTTTGCAGTTGAAAGCGGAAATTTCGGAATGCAATGAGGCGAAGGAGAGGGAGATGCCTCTTGTTGAGGAGGTGGAGGCCAAAGTTAAAGAGCTCAAGCAAACGATTGCGGTGCTGAACAGCAACCAGAGTTCTCTGAGAAGTACTTTGAGGAAGTTGAAGGAGAAGACCGGGGAAACGGATGAGAAGATTTCAAATGCTGAATTTACATTGGTACAAAATGTCCAAGAAAATGCAAATCTACGTTCAAAAATCAGTCAATCACCTGATAAAGTACAGAGGGCTTTAGAGGAAAAGAAATTAGCTCGTGAGGAGGCAAGGAATGCTGAAAGATTAGCAATGCAAGCTTTTCATGAGAAGACTGCCCTTGTTGAAGTTTTTTCCAAGGTGTACAAGAAAATGTCAAAACACAACAAGCTGATGCAGGATATACAAGAACAGGTAAATTCTGCTAAATCTATTGAAAAGGATCTTAAAGCATTGAAGGCTAAACTTAGTGATGAAGAAATATTGGAGAAGTCACTTGAGGCCAAATTGGTTGAAAAACAGAGTAAAGGTATGTTCTTGTGCAAGCATTGCTGTGTCTCCATTTCTGGCTACATGGTTTAA

>Glyma.05g169000.3 sequence-type=CDS polypeptide=Glyma.05g169000.3.p locus=Glyma.05g169000 ID=Glyma.05g169000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGAGTCGAATTACGAGTACCCAAGGCTACGGCGGCCGGAAATAGTCACAATCCTAGCGCAGTTGCAGATCGCGAACGTGACCGAGCAGGACTTCACCAACCCTAACCCTGATTTCATCTCCGATCTCTACACTCGCGTCCTCATTCATCTCGACATTCTCCTCGAGGAAGACAACGAGCAACTCGAGTTCCACGCCCTAGAGCATCTTGAAAACCCTGATTTCCACCTGGATTCCGTTCGCGCCGTGAAACTCTACAACCAGATCAACGAGGTTCTCACGACACTCGAGTGTCCGCGCAAATTCACCCTCGCCGATCTTCTCATGCCGGATCCTCACCGAACCGACCTCTTCCTTGGCTCTCTTCTCAATTTTTGTCTCGATAGGGACGCGAGAATGAACTCCGTCTCGGAAATTGTGGAGGAAGTGAACGCTCTAGAGGCGCAGCGAACGGAGTTGGAGGAGAATAGGATTTTGCAGTTGAAAGCGGAAATTTCGGAATGCAATGAGGCGAAGGAGAGGGAGATGCCTCTTGTTGAGGAGGTGGAGGCCAAAGTTAAAGAGCTCAAGCAAACGATTGCGGTGCTGAACAGCAACCAGAGTTCTCTGAGAAGTACTTTGAGGAAGTTGAAGGAGAAGACCGGGGAAACGGATGAGAAGATTTCAAATGCTGAATTTACATTGGTACAAAATGTCCAAGAAAATGCAAATCTACGTTCAAAAATCAGTCAATCACCTGATAAAGTACAGAGGGCTTTAGAGGAAAAGAAATTAGCTCGTGAGGAGGCAAGGAATGCTGAAAGATTAGCAATGCAAGCTTTTCATGAGAAGACTGCCCTTGTTGAAGTTTTTTCCAAGTTGTCAATTAGTTGGTGCTGTTGCTGA
Predicted protein sequences of Glyma.05G169000
>Glyma.05g169000.1.p sequence-type=predicted peptide transcript=Glyma.05g169000.1 locus=Glyma.05g169000 ID=Glyma.05g169000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAESNYEYPRLRRPEIVTILAQLQIANVTEQDFTNPNPDFISDLYTRVLIHLDILLEEDNEQLEFHALEHLENPDFHLDSVRAVKLYNQINEVLTTLECPRKFTLADLLMPDPHRTDLFLGSLLNFCLDRDARMNSVSEIVEEVNALEAQRTELEENRILQLKAEISECNEAKEREMPLVEEVEAKVKELKQTIAVLNSNQSSLRSTLRKLKEKTGETDEKISNAEFTLVQNVQENANLRSKISQSPDKVQRALEEKKLAREEARNAERLAMQAFHEKTALVEVFSKVYKKMSKHNKLMQDIQEQVNSAKSIEKDLKALKAKLSDEEILEKSLEAKLVEKQSKVEQMEESRKQLEKESNIMWEEATKYLSSTKSDVESKRSATETRQKNVEAVLSEVDAISSKIISVKEAGAVKVALLVRKCEELVEAFHNYANPIARVIESEQRRLGATKGGGFGISDPV*

>Glyma.05g169000.2.p sequence-type=predicted peptide transcript=Glyma.05g169000.2 locus=Glyma.05g169000 ID=Glyma.05g169000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAESNYEYPRLRRPEIVTILAQLQIANVTEQDFTNPNPDFISDLYTRVLIHLDILLEEDNEQLEFHALEHLENPDFHLDSVRAVKLYNQINEVLTTLECPRKFTLADLLMPDPHRTDLFLGSLLNFCLDRDARMNSVSEIVEEVNALEAQRTELEENRILQLKAEISECNEAKEREMPLVEEVEAKVKELKQTIAVLNSNQSSLRSTLRKLKEKTGETDEKISNAEFTLVQNVQENANLRSKISQSPDKVQRALEEKKLAREEARNAERLAMQAFHEKTALVEVFSKVYKKMSKHNKLMQDIQEQVNSAKSIEKDLKALKAKLSDEEILEKSLEAKLVEKQSKGMFLCKHCCVSISGYMV*

>Glyma.05g169000.3.p sequence-type=predicted peptide transcript=Glyma.05g169000.3 locus=Glyma.05g169000 ID=Glyma.05g169000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAESNYEYPRLRRPEIVTILAQLQIANVTEQDFTNPNPDFISDLYTRVLIHLDILLEEDNEQLEFHALEHLENPDFHLDSVRAVKLYNQINEVLTTLECPRKFTLADLLMPDPHRTDLFLGSLLNFCLDRDARMNSVSEIVEEVNALEAQRTELEENRILQLKAEISECNEAKEREMPLVEEVEAKVKELKQTIAVLNSNQSSLRSTLRKLKEKTGETDEKISNAEFTLVQNVQENANLRSKISQSPDKVQRALEEKKLAREEARNAERLAMQAFHEKTALVEVFSKLSISWCCC*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo