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Report for Sequence Feature Glyma.05G163100

Feature Type:gene_model
Chromosome:Gm05
Start:35423374
stop:35424770
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05G163100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G18930.1AT RNA ligase/cyclic nucleotide phosphodiesterase family protein JGI N/AIEA
GO:0009187GO-bp cyclic nucleotide metabolic process EnsemblGenomesN/AIEA
GO:0004112GO-mf cyclic-nucleotide phosphodiesterase activity EnsemblGenomesN/AIEA
GO:0004112GO-mf cyclic-nucleotide phosphodiesterase activity JGI N/AIEA
GO:0004113GO-mf 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity EnsemblGenomesN/AIEA
GO:0016874GO-mf ligase activity EnsemblGenomesN/AIEA
PF07823PFAM Cyclic phosphodiesterase-like protein JGI N/AIEA

Expression Patterns of Glyma.05G163100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05G163100 not represented in the dataset
Glyma.05G163100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.05G163100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g163100 Wm82.a4.v1ISS As supplied by JGI
Glyma05g29580 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05G163100
>Glyma.05g163100.1 sequence-type=CDS polypeptide=Glyma.05g163100.1.p locus=Glyma.05g163100 ID=Glyma.05g163100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAAACCAGGCAGTGTATTCGGTGTGGGCGATTCCACCGGAAGACGTGGGCGCCAGATGCGCTAACCTCATGACCGCCCTCCGATCCGAGTTCGGCGGGCCCCACTTCCACCCCCACATCACCGTCGTCGGAGCCATCAAACTCACCCCGGAAGACGCCGTGACCAAGCTCCGATCGGCGTGCCAAGCCCTGAGGCCCTTCCACGTCACCGTGGACCGCGTGGCCGCCGGCAGCTTCTTCTACCAGTGCGTGTATCTCCTCCTCCGCCCCGACCCTCACCTCCTCGAAACCAGCGCACACTGCTGCACCCACTTCGGTTACACCAATTCCACTCCTTACATGCCACACTTGAGTCTTCTATACGGAGATTTGAGCGATGAAGAGAAGCGGAAGGCGCAAGAGAGGGCTAATGCTATCGATGACACGCTCGGTGGCTTGACCTTTCAGATTACGCGCCTTGCCTTATACAAAACGGACACTGAAGACAAAACGCTCAAATCTTGGGAGAAAATTGCTGAATGCACTCTCACTCCAAATTAG
Predicted protein sequences of Glyma.05G163100
>Glyma.05g163100.1.p sequence-type=predicted peptide transcript=Glyma.05g163100.1 locus=Glyma.05g163100 ID=Glyma.05g163100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MANQAVYSVWAIPPEDVGARCANLMTALRSEFGGPHFHPHITVVGAIKLTPEDAVTKLRSACQALRPFHVTVDRVAAGSFFYQCVYLLLRPDPHLLETSAHCCTHFGYTNSTPYMPHLSLLYGDLSDEEKRKAQERANAIDDTLGGLTFQITRLALYKTDTEDKTLKSWEKIAECTLTPN*






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