Glyma.05G136000

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Report for Sequence Feature Glyma.05G136000

Feature Type:	gene_model
Chromosome:	Gm05
Start:	32832536
stop:	32838543
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05G136000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36740.1	AT	sequence-specific DNA binding transcription factors;DNA binding;DNA binding	JGI	N/A	IEA
GO:0006338	GO-bp	chromatin remodeling	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	JGI	N/A	IEA
GO:0043486	GO-bp	histone exchange	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	JGI	N/A	IEA
KOG2897	KOG	DNA-binding protein YL1 and related proteins	JGI	N/A	IEA
PTHR13275	Panther	YL-1 PROTEIN (TRANSCRIPTION FACTOR-LIKE 1)	JGI	N/A	IEA
PTHR13275:SF4	Panther	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 72 HOMOLOG	JGI	N/A	IEA
PF05764	PFAM	YL1 nuclear protein	JGI	N/A	IEA
PF08265	PFAM	YL1 nuclear protein C-terminal domain	JGI	N/A	IEA

Expression Patterns of Glyma.05G136000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05G136000 not represented in the dataset	Glyma.05G136000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.05G136000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g136000	Wm82.a4.v1	ISS	As supplied by JGI
Glyma05g26640	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.05G136000

Limit To All Plant Sequences

>Glyma.05g136000.2 sequence-type=transcript locus=Glyma.05g136000 ID=Glyma.05g136000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAGGCAGCAACGTTCAGGTCCAGGGTGCGGCATGGAGGGGTCAGGCGAAGATGTTGTGTTGCTGGACCGCGCGTCTCGAGCGACGAGGGGAAAGAGATTGACGAAGCTCCTCGACGACGAAATCCAAGAAGACGAATTGTTCTGGAACCAGGACGCTCTCAAAGAGGACGAAGAGGACGATAACTACCAAGAGGAGCCCGAAATCGCCGACGAATTCGACTCCGACTTCGACCAAGACGAGCCCGTGCCCGAGGAAGAAGAAGACCCTAACAAAAATGACGATGATGAAAGGATGCATAAAAAGAAGCGACTTATATTTCCTGGGAAGACTCTGGCGAAAAAGAAGAAAAAGAAGAAAACCATATCCAAATTGGAGAGTTCTCCAAAGGAGAATGAGGACGAGGAGCATTCCGGGAAAGTTGTGGAGGACGAGGGTGGGGAGAGAATGATCAGGAAGTCCACTAGGACTTCTGTCATTGTTCGCCAAGCTGAGAGAGATGCCATTCGTGCAGCCCTCCAAGCCACCATCAAGCCGGTCAAAAGGAAGAAGGAAGGTGAGGAGAAGAGGATGACACAGGAAGAGATGCTTTTAGAAGCTGCTCAAACAGAAATTATGAACTTGCGAAATTTAGAGCGTGTTTTGGCTAGAGAGGAAGAGGTTAAGAGAAGAGCAATTGTGCATAAAACTGTTTTTAATGGACCGCAGATACGGTATATTTCAAAAAATGGTACTTCCTATTTAGAGTTTATTAAAGGGTCGTCATTTCACTCGGACATTCCCACAGCACCTGTACAATATCCAGAGCAACCTGTTTGCCCGATTACTGGTTTGCCTGCCAAGTACCGTGATCCAAAGACTGGCCAGCCATATGCTACAAAAGAAGCTTTTAAAATAATTCGAGAACGCTTTCTGAATGAAAGTACTAACAGTAGAAAGGACATGAGCATGGGAGGCTTATATGATTCAGTTTCTGGATGTGGTTTTTCAATTAAGCGAAAGAGATCGATAATGCCAGATAAAAATGTCAACCCAGATGGTCGGTCCTTAGCTCGTTTTCGTAGAATTCCGGATTTTGAGGATGAAGATTATTCTGACTAGCTGCCTGAGGCTGATAGTGAAAGATGTCATGGTGGTTGTACTACATGATCATGATCCAGACTTCAGGTTGAGATAATATAAGAAACCGAGTATATGACCAGTGCTTGCAAGGAAATGTTGGGTCGTGTCTTGGAGCTTGGTATGCATTTTTGAAAAATAACCTATTTAAATTTTTTCGCTAAACTTGAGAAAGATATATGATGTCAAATATTCCATCGCAATTTGTTAGAAGTTATATTTTGTATATCTTTGCCAACGGTTTGGTTAGTCATCATCTGTTTGAGTTCGTTCAAGTTATGCCTTCATGAGAATTTTGGGCTTAATTTATCAATTGCGTTAATTTTTGTTTATAGCTAGCACACACCTTTTTTTTAAGGTAAGCTAGCACACACCTGACAATGGTTTTGCCACAGTGATTATCCTTATGTTTGAGTTGTATAAAGAATTAGAACGTTGAATT

Coding sequences of Glyma.05G136000

Limit To All Plant Sequences

>Glyma.05g136000.1 sequence-type=CDS polypeptide=Glyma.05g136000.1.p locus=Glyma.05g136000 ID=Glyma.05g136000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGGGTCAGGCGAAGATGTTGTGTTGCTGGACCGCGCGTCTCGAGCGACGAGGGGAAAGAGATTGACGAAGCTCCTCGACGACGAAATCCAAGAAGACGAATTGTTCTGGAACCAGGACGCTCTCAAAGAGGACGAAGAGGACGATAACTACCAAGAGGAGCCCGAAATCGCCGACGAATTCGACTCCGACTTCGACCAAGACGAGCCCGTGCCCGAGGAAGAAGAAGACCCTAACAAAAATGACGATGATGAAAGGATGCATAAAAAGAAGCGACTTATATTTCCTGGGAAGACTCTGGCGAAAAAGAAGAAAAAGAAGAAAACCATATCCAAATTGGAGAGTTCTCCAAAGGAGAATGAGGACGAGGAGCATTCCGGGAAAGTTGTGGAGGACGAGGGTGGGGAGAGAATGATCAGGAAGTCCACTAGGACTTCTGTCATTGTTCGCCAAGCTGAGAGAGATGCCATTCGTGCAGCCCTCCAAGCCACCATCAAGCCGGTCAAAAGGAAGAAGGAAGGTGAGGAGAAGAGGATGACACAGGAAGAGATGCTTTTAGAAGCTGCTCAAACAGAAATTATGAACTTGCGAAATTTAGAGCGTGTTTTGGCTAGAGAGGAAGAGGTTAAGAGAAGAGCAATTGTGCATAAAACTGTTTTTAATGGACCGCAGATACGGTATATTTCAAAAAATGGTACTTCCTATTTAGAGTTTATTAAAGGGTCGTCATTTCACTCGGACATTCCCACAGCACCTGTACAATATCCAGAGCAACCTGTTTGCCCGATTACTGGTTTGCCTGCCAAGTACCGTGATCCAAAGACTGGCCAGCCATATGCTACAAAAGAAGCTTTTAAAATAATTCGAGAACGCTTTCTGAATGAAAGTACTAACAGTAGAAAGGACATGAGCATGGGAGGCTTATATGATTCAGTTTCTGGATGTGGTTTTTCAATTAAGCGAAAGAGATCGATAATGCCAGATAAAAATGTCAACCCAGATGGTCGGTCCTTAGCTCGTTTTCGTAGAATTCCGGATTTTGAGGATGAAGATTATTCTGACTAG

>Glyma.05g136000.2 sequence-type=CDS polypeptide=Glyma.05g136000.2.p locus=Glyma.05g136000 ID=Glyma.05g136000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGGGTCAGGCGAAGATGTTGTGTTGCTGGACCGCGCGTCTCGAGCGACGAGGGGAAAGAGATTGACGAAGCTCCTCGACGACGAAATCCAAGAAGACGAATTGTTCTGGAACCAGGACGCTCTCAAAGAGGACGAAGAGGACGATAACTACCAAGAGGAGCCCGAAATCGCCGACGAATTCGACTCCGACTTCGACCAAGACGAGCCCGTGCCCGAGGAAGAAGAAGACCCTAACAAAAATGACGATGATGAAAGGATGCATAAAAAGAAGCGACTTATATTTCCTGGGAAGACTCTGGCGAAAAAGAAGAAAAAGAAGAAAACCATATCCAAATTGGAGAGTTCTCCAAAGGAGAATGAGGACGAGGAGCATTCCGGGAAAGTTGTGGAGGACGAGGGTGGGGAGAGAATGATCAGGAAGTCCACTAGGACTTCTGTCATTGTTCGCCAAGCTGAGAGAGATGCCATTCGTGCAGCCCTCCAAGCCACCATCAAGCCGGTCAAAAGGAAGAAGGAAGGTGAGGAGAAGAGGATGACACAGGAAGAGATGCTTTTAGAAGCTGCTCAAACAGAAATTATGAACTTGCGAAATTTAGAGCGTGTTTTGGCTAGAGAGGAAGAGGTTAAGAGAAGAGCAATTGTGCATAAAACTGTTTTTAATGGACCGCAGATACGGTATATTTCAAAAAATGGTACTTCCTATTTAGAGTTTATTAAAGGGTCGTCATTTCACTCGGACATTCCCACAGCACCTGTACAATATCCAGAGCAACCTGTTTGCCCGATTACTGGTTTGCCTGCCAAGTACCGTGATCCAAAGACTGGCCAGCCATATGCTACAAAAGAAGCTTTTAAAATAATTCGAGAACGCTTTCTGAATGAAAGTACTAACAGTAGAAAGGACATGAGCATGGGAGGCTTATATGATTCAGTTTCTGGATGTGGTTTTTCAATTAAGCGAAAGAGATCGATAATGCCAGATAAAAATGTCAACCCAGATGGTCGGTCCTTAGCTCGTTTTCGTAGAATTCCGGATTTTGAGGATGAAGATTATTCTGACTAG

Predicted protein sequences of Glyma.05G136000

Limit To All Plant Sequences

>Glyma.05g136000.1.p sequence-type=predicted peptide transcript=Glyma.05g136000.1 locus=Glyma.05g136000 ID=Glyma.05g136000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGSGEDVVLLDRASRATRGKRLTKLLDDEIQEDELFWNQDALKEDEEDDNYQEEPEIADEFDSDFDQDEPVPEEEEDPNKNDDDERMHKKKRLIFPGKTLAKKKKKKKTISKLESSPKENEDEEHSGKVVEDEGGERMIRKSTRTSVIVRQAERDAIRAALQATIKPVKRKKEGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKRRAIVHKTVFNGPQIRYISKNGTSYLEFIKGSSFHSDIPTAPVQYPEQPVCPITGLPAKYRDPKTGQPYATKEAFKIIRERFLNESTNSRKDMSMGGLYDSVSGCGFSIKRKRSIMPDKNVNPDGRSLARFRRIPDFEDEDYSD*

>Glyma.05g136000.2.p sequence-type=predicted peptide transcript=Glyma.05g136000.2 locus=Glyma.05g136000 ID=Glyma.05g136000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGSGEDVVLLDRASRATRGKRLTKLLDDEIQEDELFWNQDALKEDEEDDNYQEEPEIADEFDSDFDQDEPVPEEEEDPNKNDDDERMHKKKRLIFPGKTLAKKKKKKKTISKLESSPKENEDEEHSGKVVEDEGGERMIRKSTRTSVIVRQAERDAIRAALQATIKPVKRKKEGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKRRAIVHKTVFNGPQIRYISKNGTSYLEFIKGSSFHSDIPTAPVQYPEQPVCPITGLPAKYRDPKTGQPYATKEAFKIIRERFLNESTNSRKDMSMGGLYDSVSGCGFSIKRKRSIMPDKNVNPDGRSLARFRRIPDFEDEDYSD*

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