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Report for Sequence Feature Glyma.05G125700

Feature Type:gene_model
Chromosome:Gm05
Start:31886478
stop:31894299
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05G125700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G48050.1AT Ku80 family protein JGI N/AIEA
GO:0000723GO-bp telomere maintenance EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0006303GO-bp double-strand break repair via nonhomologous end joining EnsemblGenomesN/AIEA
GO:0006303GO-bp double-strand break repair via nonhomologous end joining JGI N/AIEA
GO:0006310GO-bp DNA recombination EnsemblGenomesN/AIEA
GO:0006974GO-bp cellular response to DNA damage stimulus EnsemblGenomesN/AIEA
GO:0032508GO-bp DNA duplex unwinding EnsemblGenomesN/AIEA
GO:0000784GO-cc nuclear chromosome, telomeric region EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0043564GO-cc Ku70:Ku80 complex EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003684GO-mf damaged DNA binding EnsemblGenomesN/AIEA
GO:0004003GO-mf ATP-dependent DNA helicase activity EnsemblGenomesN/AIEA
GO:0004003GO-mf ATP-dependent DNA helicase activity JGI N/AIEA
GO:0004386GO-mf helicase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016817GO-mf hydrolase activity, acting on acid anhydrides EnsemblGenomesN/AIEA
GO:0016817GO-mf hydrolase activity, acting on acid anhydrides JGI N/AIEA
GO:0042162GO-mf telomeric DNA binding EnsemblGenomesN/AIEA
KOG2326 KOG DNA-binding subunit of a DNA-dependent protein kinase (Ku80 autoantigen) JGI N/AIEA
PTHR12604Panther KU AUTOANTIGEN DNA HELICASE JGI N/AIEA
PTHR12604:SF3Panther X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 5 JGI N/AIEA
PF02735PFAM Ku70/Ku80 beta-barrel domain JGI N/AIEA
PF03730PFAM Ku70/Ku80 C-terminal arm JGI N/AIEA
PF03731PFAM Ku70/Ku80 N-terminal alpha/beta domain JGI N/AIEA
PF08785PFAM Ku C terminal domain like JGI N/AIEA

Expression Patterns of Glyma.05G125700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05G125700 not represented in the dataset
Glyma.05G125700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.05G125700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g125700 Wm82.a4.v1ISS As supplied by JGI
Glyma05g25550 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05G125700
>Glyma.05g125700.2 sequence-type=transcript locus=Glyma.05g125700 ID=Glyma.05g125700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATAGATCCCTGATCCCCAGCCCCCTAAAACAATTTTTCTTTTCTCACAAAAATTTCTGTATTGGTGGGACCTTTGAGTTTTGAAGCGGGAAGACCGAAGATGAACGAAGCAGCAACTTACATATAAGTAACGCTCCTTCTTCTACAAGCTtctctctctgtctctcactctctctctctctctGCCTTTTCCACCCATGGCTCGAAACAAGGAAGCGTTGCTTTTGCTGCTTGATGTGGGCCCGTCAATGCATCCCGCTCTTTCTGAAATTGAGAAAGTCTGCTCCATGCTTGTGCATAAGAAGCTGATCTATAGCAAATATGATGAAGTGGGAATAGTCTTATTTGGAACTGAAGACACTAATAATGAGCTTACTACGGAAGTGGGTGGGTATCAACATGTTGTGGTTTTGAAAAATATTAAAGTTGTGGATGGAGATATTGTTGAGGCTTTACAACAACTGCCTCGAGGAACAACTGATGGTGATTTTCTTGATGCTGTCATTGTTGGCATGGATGTGTTAGTAAAAAAATTTGGAGTAACAAACAAGGGAAAGAAACGTGTGTGTCTTATTACAAATGCACAATGTCAAATAAAAGAATCTGATGAAGGAACAAAGGAAGAGCAAGTTACCACCATTGCCAAACAAATGACTGCCCATGGTATAAAAATGGAAAGTATAATTATGAGAGGAAAGCTTAGTCAAGATGCAAACAAGGGAATAATGGATGAGAATGATCGCTTGTTAAATATTTTTTCAAAGGAAACATCAACAAGATTGTTGTATGTGGAGAATCCAATTTCTTTGTTTGGTGCTCTTCGAACAAGAAATATAGCTCTGGTTACAGTTTTCAGAGGGCATCTTGAAATCAGTCCAAAACTGAGCATTAAGGTAATGGTATACAAGAAAACAACTGAAGAGAAATTTCCTTCTATGAAGAAATATTCTGATAAGGCTCCTCCAAATGATAAATTTGCTAAACATGAAGTCAAAATAGATTATGAACACAAGAGTTCTAAAGATCCTGACAAAGTTGTCCCCCCTGACCAAAGAATTAAAGGCTATCCTTATGGGCCTCAAATAGTTCCCATATCCTCTGCTGAGTGGGAGGCTGTTAAATTCAAACCGGAAAAAGGTGTGAAGCTCATGGGATTTACTGATTCTTCTAATGTATTTAGACACCATTACATGAAAGATGTATATGTTTTCCTACCTGAACCTGGAAATACAAGAGCCATGATTGCAGTTTCTGCAGTAGCAAGGGCTATGAAGGAAATGAATAAGGTGGCAATAGTACGTTGTGTTTGGAGACAGGGACAAGCGAATGTTGTCATTGGGGTCTTGACACCCAATTTATCTGATAAAGAAAATATTCCTGATTCATTTTACTTAAATGTACTTCCTTTTGCTGAGGATGTGCGAGAGTTTCAATTCCCTTCCTTCACTAATTTCCCAGCATCGTGGCAACCAAATGGACAACAGCTAGAGGCTGCAGCTAACTTAATAAAAACGCTTGATCTTGCACCACATGGGCAAGAGGAAGTTTTGCTACCTGACTTTACACCAAATCCAGTGTTAGAGAAAAAGTCGAGGCGTTTATTGGGAGGAAAGAGATCTTTTTCAAATGATGAAGAGGTTAAAGGAAACATTACTGCTCAACCAGCCAATCTCACCGGAAATGCATCTGTTAATGTTGGGAAAATTGGGGATCTGACTCCCGTTCAATATTTTGAAGCCTTGATTTCACGCAGAGATAGTCCAGATTGGGTTGTAAAAGCCATTAATGAAATGAAAAATAAAATATTTGACCTGGTGGAGGACTCCCATGAAGGGGATAACTATCCTAAAGCACTGGAATGTTTAGTTGCACTTCGCAAGGGTTGCATCCTTGAGCAGGAACCGGAACAGTTCAATGATTTCCTTAAACATCTATGGAATTTCTGTCAAGAGAAAAACCTCCCTAGTTTCTGTGAATATCTTGCTTCTAAGGAACTCACCTTGATCTCCAAAACAGAAGCTATAGACAGTGAAAATACTGATGACAAAGCCAGAAAAGGTTTCTTGGTTAAATCTGAACCAAAAGTTGATTGATTCCATCACTGTATGCGCTGAAATATCTGAGAGCTTCATTCTTTTGCCTCAGTAATGATTAGATATCTTGTAAAAACATCTGTTTTGGAACAAAAATCTAGGAATACCTTGTAAATTGTACTCATACTTTAGGATAATGATATGTCAAAACCAGACTGGAGAAGTATGATGCAGTTGCATGGTAGATGTTTAAGTTGGTTTATATTTCCCAATTTCCCTGAACTAATGCTATTTCACTCCAATAGCAGGGTTTACTGATGGTCCATTGAATTTTGGTCTTTTCTGTATGTCTGTATGTAGTTCAACCTTAATGCTGTATAACAAATTCATGTCTACATCTAGGAGCCACCAGAAGTTATGACTATTTCTTTGATTAGTTCCAAACATGTTTCAAATGTGTTTTCTGTCAAATGAGTCACTTGATTCTCTTTAATGGCTAAACTTGGC
Coding sequences of Glyma.05G125700
>Glyma.05g125700.1 sequence-type=CDS polypeptide=Glyma.05g125700.1.p locus=Glyma.05g125700 ID=Glyma.05g125700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCGAAACAAGGAAGCGTTGCTTTTGCTGCTTGATGTGGGCCCGTCAATGCATCCCGCTCTTTCTGAAATTGAGAAAGTCTGCTCCATGCTTGTGCATAAGAAGCTGATCTATAGCAAATATGATGAAGTGGGAATAGTCTTATTTGGAACTGAAGACACTAATAATGAGCTTACTACGGAAGTGGGTGGGTATCAACATGTTGTGGTTTTGAAAAATATTAAAGTTGTGGATGGAGATATTGTTGAGGCTTTACAACAACTGCCTCGAGGAACAACTGATGGTGATTTTCTTGATGCTGTCATTGTTGGCATGGATGTGTTAGTAAAAAAATTTGGAGTAACAAACAAGGGAAAGAAACGTGTGTGTCTTATTACAAATGCACAATGTCAAATAAAAGAATCTGATGAAGGAACAAAGGAAGAGCAAGTTACCACCATTGCCAAACAAATGACTGCCCATGGTATAAAAATGGAAAGTATAATTATGAGAGGAAAGCTTAGTCAAGATGCAAACAAGGGAATAATGGATGAGAATGATCGCTTGTTAAATATTTTTTCAAAGGAAACATCAACAAGATTGTTGTATGTGGAGAATCCAATTTCTTTGTTTGGTGCTCTTCGAACAAGAAATATAGCTCTGGTTACAGTTTTCAGAGGGCATCTTGAAATCAGTCCAAAACTGAGCATTAAGGTAATGGTATACAAGAAAACAACTGAAGAGAAATTTCCTTCTATGAAGAAATATTCTGATAAGGCTCCTCCAAATGATAAATTTGCTAAACATGAAGTCAAAATAGATTATGAACACAAGAGTTCTAAAGATCCTGACAAAGTTGTCCCCCCTGACCAAAGAATTAAAGGCTATCCTTATGGGCCTCAAATAGTTCCCATATCCTCTGCTGAGTGGGAGGCTGTTAAATTCAAACCGGAAAAAGGTGTGAAGCTCATGGGATTTACTGATTCTTCTAATGTATTTAGACACCATTACATGAAAGATGTATATGTTTTCCTACCTGAACCTGGAAATACAAGAGCCATGATTGCAGTTTCTGCAGTAGCAAGGGCTATGAAGGAAATGAATAAGGTGGCAATAGTACGTTGTGTTTGGAGACAGGGACAAGCGAATGTTGTCATTGGGGTCTTGACACCCAATTTATCTGATAAAGAAAATATTCCTGATTCATTTTACTTAAATGTACTTCCTTTTGCTGAGGATGTGCGAGAGTTTCAATTCCCTTCCTTCACTAATTTCCCAGCATCGTGGCAACCAAATGGACAACAGCTAGAGGCTGCAGCTAACTTAATAAAAACGCTTGATCTTGCACCACATGGGCAAGAGGAAGTTTTGCTACCTGACTTTACACCAAATCCAGTGTTAGAGCGCTTTTATCGTTATCTTGAGCTGAAATCAAAGGATCCAGATGTGGCAGTACCTCCTCTTGATGGCACACTCAAGAAAATTACAGAGCCTGATACTGACCTGCTTTTGCAAAATAAATCTGAAATAGACTCATTTTGTAGGTCTTTTGAGCTAAAGGGAAATCCCTTGAAAAAGTCGAGGCGTTTATTGGGAGGAAAGAGATCTTTTTCAAATGATGAAGAGGTTAAAGGAAACATTACTGCTCAACCAGCCAATCTCACCGGAAATGCATCTGTTAATGTTGGGAAAATTGGGGATCTGACTCCCGTTCAATATTTTGAAGCCTTGATTTCACGCAGAGATAGTCCAGATTGGGTTGTAAAAGCCATTAATGAAATGAAAAATAAAATATTTGACCTGGTGGAGGACTCCCATGAAGGGGATAACTATCCTAAAGCACTGGAATGTTTAGTTGCACTTCGCAAGGGTTGCATCCTTGAGCAGGAACCGGAACAGTTCAATGATTTCCTTAAACATCTATGGAATTTCTGTCAAGAGAAAAACCTCCCTAGTTTCTGTGAATATCTTGCTTCTAAGGAACTCACCTTGATCTCCAAAACAGAAGCTATAGACAGTGAAAATACTGATGACAAAGCCAGAAAAGGTTTCTTGGTTAAATCTGAACCAAAAGTTGATTGA

>Glyma.05g125700.2 sequence-type=CDS polypeptide=Glyma.05g125700.2.p locus=Glyma.05g125700 ID=Glyma.05g125700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCGAAACAAGGAAGCGTTGCTTTTGCTGCTTGATGTGGGCCCGTCAATGCATCCCGCTCTTTCTGAAATTGAGAAAGTCTGCTCCATGCTTGTGCATAAGAAGCTGATCTATAGCAAATATGATGAAGTGGGAATAGTCTTATTTGGAACTGAAGACACTAATAATGAGCTTACTACGGAAGTGGGTGGGTATCAACATGTTGTGGTTTTGAAAAATATTAAAGTTGTGGATGGAGATATTGTTGAGGCTTTACAACAACTGCCTCGAGGAACAACTGATGGTGATTTTCTTGATGCTGTCATTGTTGGCATGGATGTGTTAGTAAAAAAATTTGGAGTAACAAACAAGGGAAAGAAACGTGTGTGTCTTATTACAAATGCACAATGTCAAATAAAAGAATCTGATGAAGGAACAAAGGAAGAGCAAGTTACCACCATTGCCAAACAAATGACTGCCCATGGTATAAAAATGGAAAGTATAATTATGAGAGGAAAGCTTAGTCAAGATGCAAACAAGGGAATAATGGATGAGAATGATCGCTTGTTAAATATTTTTTCAAAGGAAACATCAACAAGATTGTTGTATGTGGAGAATCCAATTTCTTTGTTTGGTGCTCTTCGAACAAGAAATATAGCTCTGGTTACAGTTTTCAGAGGGCATCTTGAAATCAGTCCAAAACTGAGCATTAAGGTAATGGTATACAAGAAAACAACTGAAGAGAAATTTCCTTCTATGAAGAAATATTCTGATAAGGCTCCTCCAAATGATAAATTTGCTAAACATGAAGTCAAAATAGATTATGAACACAAGAGTTCTAAAGATCCTGACAAAGTTGTCCCCCCTGACCAAAGAATTAAAGGCTATCCTTATGGGCCTCAAATAGTTCCCATATCCTCTGCTGAGTGGGAGGCTGTTAAATTCAAACCGGAAAAAGGTGTGAAGCTCATGGGATTTACTGATTCTTCTAATGTATTTAGACACCATTACATGAAAGATGTATATGTTTTCCTACCTGAACCTGGAAATACAAGAGCCATGATTGCAGTTTCTGCAGTAGCAAGGGCTATGAAGGAAATGAATAAGGTGGCAATAGTACGTTGTGTTTGGAGACAGGGACAAGCGAATGTTGTCATTGGGGTCTTGACACCCAATTTATCTGATAAAGAAAATATTCCTGATTCATTTTACTTAAATGTACTTCCTTTTGCTGAGGATGTGCGAGAGTTTCAATTCCCTTCCTTCACTAATTTCCCAGCATCGTGGCAACCAAATGGACAACAGCTAGAGGCTGCAGCTAACTTAATAAAAACGCTTGATCTTGCACCACATGGGCAAGAGGAAGTTTTGCTACCTGACTTTACACCAAATCCAGTGTTAGAGAAAAAGTCGAGGCGTTTATTGGGAGGAAAGAGATCTTTTTCAAATGATGAAGAGGTTAAAGGAAACATTACTGCTCAACCAGCCAATCTCACCGGAAATGCATCTGTTAATGTTGGGAAAATTGGGGATCTGACTCCCGTTCAATATTTTGAAGCCTTGATTTCACGCAGAGATAGTCCAGATTGGGTTGTAAAAGCCATTAATGAAATGAAAAATAAAATATTTGACCTGGTGGAGGACTCCCATGAAGGGGATAACTATCCTAAAGCACTGGAATGTTTAGTTGCACTTCGCAAGGGTTGCATCCTTGAGCAGGAACCGGAACAGTTCAATGATTTCCTTAAACATCTATGGAATTTCTGTCAAGAGAAAAACCTCCCTAGTTTCTGTGAATATCTTGCTTCTAAGGAACTCACCTTGATCTCCAAAACAGAAGCTATAGACAGTGAAAATACTGATGACAAAGCCAGAAAAGGTTTCTTGGTTAAATCTGAACCAAAAGTTGATTGA
Predicted protein sequences of Glyma.05G125700
>Glyma.05g125700.1.p sequence-type=predicted peptide transcript=Glyma.05g125700.1 locus=Glyma.05g125700 ID=Glyma.05g125700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARNKEALLLLLDVGPSMHPALSEIEKVCSMLVHKKLIYSKYDEVGIVLFGTEDTNNELTTEVGGYQHVVVLKNIKVVDGDIVEALQQLPRGTTDGDFLDAVIVGMDVLVKKFGVTNKGKKRVCLITNAQCQIKESDEGTKEEQVTTIAKQMTAHGIKMESIIMRGKLSQDANKGIMDENDRLLNIFSKETSTRLLYVENPISLFGALRTRNIALVTVFRGHLEISPKLSIKVMVYKKTTEEKFPSMKKYSDKAPPNDKFAKHEVKIDYEHKSSKDPDKVVPPDQRIKGYPYGPQIVPISSAEWEAVKFKPEKGVKLMGFTDSSNVFRHHYMKDVYVFLPEPGNTRAMIAVSAVARAMKEMNKVAIVRCVWRQGQANVVIGVLTPNLSDKENIPDSFYLNVLPFAEDVREFQFPSFTNFPASWQPNGQQLEAAANLIKTLDLAPHGQEEVLLPDFTPNPVLERFYRYLELKSKDPDVAVPPLDGTLKKITEPDTDLLLQNKSEIDSFCRSFELKGNPLKKSRRLLGGKRSFSNDEEVKGNITAQPANLTGNASVNVGKIGDLTPVQYFEALISRRDSPDWVVKAINEMKNKIFDLVEDSHEGDNYPKALECLVALRKGCILEQEPEQFNDFLKHLWNFCQEKNLPSFCEYLASKELTLISKTEAIDSENTDDKARKGFLVKSEPKVD*

>Glyma.05g125700.2.p sequence-type=predicted peptide transcript=Glyma.05g125700.2 locus=Glyma.05g125700 ID=Glyma.05g125700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARNKEALLLLLDVGPSMHPALSEIEKVCSMLVHKKLIYSKYDEVGIVLFGTEDTNNELTTEVGGYQHVVVLKNIKVVDGDIVEALQQLPRGTTDGDFLDAVIVGMDVLVKKFGVTNKGKKRVCLITNAQCQIKESDEGTKEEQVTTIAKQMTAHGIKMESIIMRGKLSQDANKGIMDENDRLLNIFSKETSTRLLYVENPISLFGALRTRNIALVTVFRGHLEISPKLSIKVMVYKKTTEEKFPSMKKYSDKAPPNDKFAKHEVKIDYEHKSSKDPDKVVPPDQRIKGYPYGPQIVPISSAEWEAVKFKPEKGVKLMGFTDSSNVFRHHYMKDVYVFLPEPGNTRAMIAVSAVARAMKEMNKVAIVRCVWRQGQANVVIGVLTPNLSDKENIPDSFYLNVLPFAEDVREFQFPSFTNFPASWQPNGQQLEAAANLIKTLDLAPHGQEEVLLPDFTPNPVLEKKSRRLLGGKRSFSNDEEVKGNITAQPANLTGNASVNVGKIGDLTPVQYFEALISRRDSPDWVVKAINEMKNKIFDLVEDSHEGDNYPKALECLVALRKGCILEQEPEQFNDFLKHLWNFCQEKNLPSFCEYLASKELTLISKTEAIDSENTDDKARKGFLVKSEPKVD*






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