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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G09580.1 | AT | FAD/NAD(P)-binding oxidoreductase family protein | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0009941 | GO-cc | chloroplast envelope | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| KOG0029 | KOG | Amine oxidase | JGI | N/A | IEA |
| PTHR10742 | Panther | AMINE OXIDASE | JGI | N/A | IEA |
| PTHR10742:SF100 | Panther | JGI | N/A | IEA | |
| PF01593 | PFAM | Flavin containing amine oxidoreductase | JGI | N/A | IEA |
| CAROTENOID-PWY | SoyCyc9 | superpathway of carotenoid biosynthesis in plants | Plant Metabolic Network | ISS | |
| PWY-6475 | SoyCyc9 | trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria) | Plant Metabolic Network | ISS | |
| GN7V-65563 | SoyCyc9-rxn | 15-cis-phytoene desaturase | Plant Metabolic Network | ISS |
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Glyma.05G120300 not represented in the dataset |
Glyma.05G120300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.05g120300 | Wm82.a4.v1 | ISS | As supplied by JGI |
>Glyma.05g120300.1 sequence-type=CDS polypeptide=Glyma.05g120300.1.p locus=Glyma.05g120300 ID=Glyma.05g120300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGACTACAATCACCCTCTCCCTCCCTTGCACAAACCCCTACTTCCTCTCTTCTTCTCCAAAACGATTCAGATTCAACACCCAATCAGCACAACTTTCCCCTTCCTCCTCCTCACCTCTCCAATCCCCACCACTCCCCAAAACCACCGGAGTCATCGTCATCGGCGCGGGCCTCGCCGGACTCGCCGCCGCCACCCACCTGAACTCCCAGAACATCCCCTTCCTCCTCCTGGAAGCCTCCGACGCCGTCGGAGGCCGCGTCCGCACCGACATTGTCGACGGCTTCCTCCTCGACCGCGGCTTCCAAATCTTCATCACCGCCTACCCGGAAGCCCAAAAGCTCCTCAATTATCAATCTCTCAACCTCCAGAAGTTCTACTCCGGCGCCCGAATCTTCTACGATGGCCAATTCCACACCGTCGCCGACCCTCTCCGCCACTTCTGGGACTCCGCGAGGTCCCTCACCAACCCAATCGGATCCCCCCTCGACAAGCTCCTAATCGGATCCACCAGAATCCGCGCCCTCGTCAAATCCGACGAAGAAATCCTCACCGCAGAGGAAGTCCCCACAATCGAACTACTAAAAAAACTAGGGTTTTCCGATTCCATCATCCGAAGATTCTTCCGTCCGTTCTTCGGCGGAATCTTCTTCGACCCTGACCTGGAAACGACGTCGCGCTTGTTCAATTTCATCTTCAAATGCCTCGCCCTCGGAGACAACACTCTTCCAGCGAGGGGCATATCGGCGATCCCGGAACAGCTGGCGGCGAGGTTGCCGTCCGGTTCGATCCTGCTCAACTCCAAGGCCGTTTCGGTCGACCTCGATAATTCCGATTCGCCGCTCGTGAGACTCCAAAACGGCGACGTTTTGAAGAGCGAGCTAGGAGTCATAGTAGCGGTTGAAGAACCAGCAGCAGTTCATTTATTATCTGGAAGAACCGGTCCGGTTCCTAAAAAGCCGGTTCGAAGCACGGTCTGTTTGTACTTCACCGCGAATCGGGACCAGATCCCGGTACCTGACCCGGTTCTGTTTCTGAACGGGTCGGGTAAGGGGATTGTGAACAACATGTTTTTCGTCACGAACGTGGCTCCGTCGTTTGGCCCACCCGATAAAGGCCTTGTATCAGTGTCACTAATAGGGCTCTTTGAGGGCGTGTCAGATGAAGAGCTTGTGGGTAAAGTGGTTAATGAGCTTTCGGGTTGGTTTGGGGAGAAAATGGTTTCGAAATGGAACCATTTGAGGACTTATCGAATCGGGTTCGCACAGCCCAATCAGTGCCCGCCCACGGATCTGAAGAAAGACCCGAGAGTTGAGTCGGGTTTGTATGTGTGTGGGGATCATTTGACCTCTGCCACGTTTGATGGTGCTTTGGTCTCTGGGAGGAGGGCAGCAGAATCCCTATTGAAGGATAGAGCCCTCACTGCAGCTTAA
>Glyma.05g120300.1.p sequence-type=predicted peptide transcript=Glyma.05g120300.1 locus=Glyma.05g120300 ID=Glyma.05g120300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MTTITLSLPCTNPYFLSSSPKRFRFNTQSAQLSPSSSSPLQSPPLPKTTGVIVIGAGLAGLAAATHLNSQNIPFLLLEASDAVGGRVRTDIVDGFLLDRGFQIFITAYPEAQKLLNYQSLNLQKFYSGARIFYDGQFHTVADPLRHFWDSARSLTNPIGSPLDKLLIGSTRIRALVKSDEEILTAEEVPTIELLKKLGFSDSIIRRFFRPFFGGIFFDPDLETTSRLFNFIFKCLALGDNTLPARGISAIPEQLAARLPSGSILLNSKAVSVDLDNSDSPLVRLQNGDVLKSELGVIVAVEEPAAVHLLSGRTGPVPKKPVRSTVCLYFTANRDQIPVPDPVLFLNGSGKGIVNNMFFVTNVAPSFGPPDKGLVSVSLIGLFEGVSDEELVGKVVNELSGWFGEKMVSKWNHLRTYRIGFAQPNQCPPTDLKKDPRVESGLYVCGDHLTSATFDGALVSGRRAAESLLKDRALTAA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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