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Report for Sequence Feature Glyma.05G117600

Feature Type:gene_model
Chromosome:Gm05
Start:31064474
stop:31068470
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05G117600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G64200.1AT ortholog of human splicing factor SC35 JGI N/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
KOG4207 KOG Predicted splicing factor, SR protein superfamily JGI N/AIEA
PTHR23147Panther SERINE/ARGININE RICH SPLICING FACTOR JGI N/AIEA
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI N/AIEA

Proteins Associated with Glyma.05G117600
LocusGene SymbolProtein Name
SF serine/arginine-rich splicing factor

Expression Patterns of Glyma.05G117600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05G117600 not represented in the dataset
Glyma.05G117600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05G117600
ParalogEvidenceComments
Glyma.08g072600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05G117600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g117600 Wm82.a4.v1ISS As supplied by JGI
Glyma05g24540 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05G117600
>Glyma.05g117600.2 sequence-type=transcript locus=Glyma.05g117600 ID=Glyma.05g117600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTCAAGAAGATTCTGCGGCCAAACCCTAGCTACCTCTTCCTTAATCCCTAAtctctatttctctctctctctttttctctGCAAAACAAAAATGTCTCACTTCGGACGTTCGGGTCCCCCAGACATTTCCGACACTTACTCTCTTCTCGTTCTGAACATCACCTTCCGTACCACCGCCGACGACCTATTCCCTCTCTTCGACAAGTATGGGAAGGTCGTCGACATCTTCATCCCCAAGGATCGAAGGACTGGTGAATCGAGGGGTTTTGCGTTCGTGCGTTACAAGTATGCTGATGAGGCTCAGAAGGCCGTTGAGAGGCTCGACGGGAGAATGGTTGATGGTCGCGAAATAACGGTCCAGTTTGCGAAATATGGGCCTAATGCTGAAAGGATTCACAAAGGAAGGATTATTGAAACATCCCCAAGATCAAGGCGATCAAGGAGCCGTAGCCCAAGGAAAAGGCATCGTGATGATTACAGAGACAGAGATTATAGGAGAAGAAGTCGCAGCAGAAGTTATGATAGGTATGAACGTGACAGGCATCGTGGGAGAGACAAAGATTATCGTCGCAGAAGTAGGAGCCGTAGTGCCAGTCTTGATTACAAGGGTCGTGGTAGAGGACGCTATGATGATGAGCGTAATAGTAGAAGCCGGAGCAGATCAGTTGATAGCCGCTCCCCTGCACGACGCAGTCCTAGTCCTCGAAGGAGTCCCTCCCCTCAGAGGAGCACTTCCCCTCAAAGGAGTACTTCCCCTAGGAAGAGTCCACGGGGTGAAAGTCCTGCAAATCGTAGCCGTGAGGAACGTTCCCCTACCCCTCGCAGTGTCTCACCACGCGGTCGCCCTGATGCTTCACGAAGTCCTTCCCCTCGAAATTCAAACGGGGATGAATAAGCTATGTTTTTCATGAAAAATTCTGGAGACGTCGGACTATTGCACCTGTAGCTGTTTTGCCATTGTTGGATCTTTTAGTCTATGTGAATGGTCTTATCAGAGTCATTGAAGAATTTTATGATCTAAGTGCTATTTGTTATGATCGGGAAAAGTGATGAGGGCATGATAGCCGCATGTTGACTTTGTTGCTGTTGATGCTGTTTCTATTCATTGATGATTGGTCGTGAATTTGATGCTGGTTGCAAGAGTACGCTGGTTTTAGAACTGATTGTTTTACCAGTGTGCTGATTAGACAGACAATTAGTTGAGTTGGTTTTTTTCCTGAATGATCTGATCATTGTGTTCTGAAAAGGATTCTTGATGCTGTGATGAACACGAGTGACCATATTTTGTCATGTAGCTGATGCCTCCTAGGAGTTGGACCTGTCATTTGTTGATTCAGATGCAGATACTAAACATAAAACTGTGGGTATTAAATATGAACTTTAATGTGCTGGTGTTTATTTCGAATCACAGTGAAGGGGACAATGGTAACACCATGGTTTATTTTTTAGGGTATTTTAATCAATATTTTATTCAAGATTATAACATCTGCTACTTAACGTAGTGAGATATGTTTGTTGTAGCACACTGCTCCATGACACTGTAGCTGTGAGGTGGTAGCTGATGCATCTTTAATATGAAATGCATGTGTTCGTGAATAATTTGAAGCACTAACCAATTACTGTAGCTGACTGTTGCTGCCCTTTATGCTGGAATCGGGTTGGCAATGGTATCAGCGGTTGATACTGATGATGGCTGTCTAGCTGTGCTGCTGGTTTCTGTTGATTCCAAAGCCACTTGACAATTGTTTTTTCATTATTTGACTGGTGATTTGTTTTTGTAGTCTCAATTTCAGTTATTCATTCATTCTTATGGCAAAACGATATATAACTAGTGGCAATCTTTTGTTGCTTTGATATTTGTGATAACTATTGCAGCATTGTGTTGTGTTTACTGTTTTGCTACTGAAATAACCAATGTGTTTTAGA
Coding sequences of Glyma.05G117600
>Glyma.05g117600.1 sequence-type=CDS polypeptide=Glyma.05g117600.1.p locus=Glyma.05g117600 ID=Glyma.05g117600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTCACTTCGGACGTTCGGGTCCCCCAGACATTTCCGACACTTACTCTCTTCTCGTTCTGAACATCACCTTCCGTACCACCGCCGACGACCTATTCCCTCTCTTCGACAAGTATGGGAAGGTCGTCGACATCTTCATCCCCAAGGATCGAAGGACTGGTGAATCGAGGGGTTTTGCGTTCGTGCGTTACAAGTATGCTGATGAGGCTCAGAAGGCCGTTGAGAGGCTCGACGGGAGAATGGTTGATGGTCGCGAAATAACGGTCCAGTTTGCGAAATATGGGCCTAATGCTGAAAGGATTCACAAAGGAAGGATTATTGAAACATCCCCAAGATCAAGGCGATCAAGGAGCCGTAGCCCAAGGAAAAGGCATCGTGATGATTACAGAGACAGAGATTATAGGAGAAGAAGTCGCAGCAGAAGTTATGATAGGTATGAACGTGACAGGCATCGTGGGAGAGACAAAGATTATCGTCGCAGAAGTAGGAGCCGTAGTGCCAGTCTTGATTACAAGGGTCGTGGTAGAGGACGCTATGATGATGAGCGTAATAGTAGAAGCCGGAGCAGATCAGTTGATAGCCGCTCCCCTGCACGACGCAGTCCTAGTCCTCGAAGGAGTCCCTCCCCTCAGAGGAGCACTTCCCCTCAAAGGAGTACTTCCCCTAGGAAGAGTCCACGGGGTGAAAGTCCTGCAAATCGTAGCCGTGAGGAACGTTCCCCTACCCCTCGCAGTGTCTCACCACGCGGTCGCCCTGATGCTTCACGAAGTCCTTCCCCTCGAAATTCAAACGGGGATGAATAA

>Glyma.05g117600.2 sequence-type=CDS polypeptide=Glyma.05g117600.2.p locus=Glyma.05g117600 ID=Glyma.05g117600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTCACTTCGGACGTTCGGGTCCCCCAGACATTTCCGACACTTACTCTCTTCTCGTTCTGAACATCACCTTCCGTACCACCGCCGACGACCTATTCCCTCTCTTCGACAAGTATGGGAAGGTCGTCGACATCTTCATCCCCAAGGATCGAAGGACTGGTGAATCGAGGGGTTTTGCGTTCGTGCGTTACAAGTATGCTGATGAGGCTCAGAAGGCCGTTGAGAGGCTCGACGGGAGAATGGTTGATGGTCGCGAAATAACGGTCCAGTTTGCGAAATATGGGCCTAATGCTGAAAGGATTCACAAAGGAAGGATTATTGAAACATCCCCAAGATCAAGGCGATCAAGGAGCCGTAGCCCAAGGAAAAGGCATCGTGATGATTACAGAGACAGAGATTATAGGAGAAGAAGTCGCAGCAGAAGTTATGATAGGTATGAACGTGACAGGCATCGTGGGAGAGACAAAGATTATCGTCGCAGAAGTAGGAGCCGTAGTGCCAGTCTTGATTACAAGGGTCGTGGTAGAGGACGCTATGATGATGAGCGTAATAGTAGAAGCCGGAGCAGATCAGTTGATAGCCGCTCCCCTGCACGACGCAGTCCTAGTCCTCGAAGGAGTCCCTCCCCTCAGAGGAGCACTTCCCCTCAAAGGAGTACTTCCCCTAGGAAGAGTCCACGGGGTGAAAGTCCTGCAAATCGTAGCCGTGAGGAACGTTCCCCTACCCCTCGCAGTGTCTCACCACGCGGTCGCCCTGATGCTTCACGAAGTCCTTCCCCTCGAAATTCAAACGGGGATGAATAA
Predicted protein sequences of Glyma.05G117600
>Glyma.05g117600.1.p sequence-type=predicted peptide transcript=Glyma.05g117600.1 locus=Glyma.05g117600 ID=Glyma.05g117600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFAKYGPNAERIHKGRIIETSPRSRRSRSRSPRKRHRDDYRDRDYRRRSRSRSYDRYERDRHRGRDKDYRRRSRSRSASLDYKGRGRGRYDDERNSRSRSRSVDSRSPARRSPSPRRSPSPQRSTSPQRSTSPRKSPRGESPANRSREERSPTPRSVSPRGRPDASRSPSPRNSNGDE*

>Glyma.05g117600.2.p sequence-type=predicted peptide transcript=Glyma.05g117600.2 locus=Glyma.05g117600 ID=Glyma.05g117600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFAKYGPNAERIHKGRIIETSPRSRRSRSRSPRKRHRDDYRDRDYRRRSRSRSYDRYERDRHRGRDKDYRRRSRSRSASLDYKGRGRGRYDDERNSRSRSRSVDSRSPARRSPSPRRSPSPQRSTSPQRSTSPRKSPRGESPANRSREERSPTPRSVSPRGRPDASRSPSPRNSNGDE*






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