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Report for Sequence Feature Glyma.05G117000

Feature Type:gene_model
Chromosome:Gm05
Start:30980199
stop:30990654
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05G117000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G64220.1AT Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains JGI N/AIEA
GO:0006366GO-bp transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0045944GO-bp positive regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0001077GO-mf transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding EnsemblGenomesN/AIEA
KOG0520 KOG Uncharacterized conserved protein, contains IPT/TIG domain JGI N/AIEA
PTHR23335Panther CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR (CAMTA) JGI N/AIEA
PF00023PFAM Ankyrin repeat JGI N/AIEA
PF00612PFAM IQ calmodulin-binding motif JGI N/AIEA
PF01833PFAM IPT/TIG domain JGI N/AIEA
PF03859PFAM CG-1 domain JGI N/AIEA

Proteins Associated with Glyma.05G117000
LocusGene SymbolProtein Name
CAMTA5 Calmodulin binding transcription activator 5

Expression Patterns of Glyma.05G117000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05G117000
ParalogEvidenceComments
Glyma.08g072100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05G117000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g117000 Wm82.a4.v1ISS As supplied by JGI
Glyma05g24430 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05G117000
>Glyma.05g117000.1 sequence-type=CDS polypeptide=Glyma.05g117000.1.p locus=Glyma.05g117000 ID=Glyma.05g117000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGAGCGTTCGTGTTTCGGATTGGGACCTCGATTAGATCTTCAGCAATTACAACTTGAAGCCCAGCATAGGTGGTTGCGCCCTGCAGAAATATGTGAAATTCTTCGCAATTATCAGATGTTTCAAATCACATCAGAACCACCTAACGGGCCACCAAGTGGTTCCCTTTTTCTATTTGATCGGAAGGTTTTAAGGTACTTTAGAAAAGATGGACATAATTGGAGAAAGAAAAAAGATGGAAAGACTGTGAAGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGACGTGTTACACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACCGGATATGATGCATATAGTATTTGTTCACTACTTGGATGTTAAGGTTAACAAAACCAATGTTGGTGGAAAAACATATTCTGACGAGGTTACATCAGATTCCCAGAAGAGCAGTTCTTTGTCATCTGGCTTTCCCAGAAATTATGGTAGTGTGCCTTCTGGAAGTACAGATTCCATGAGCCCAACAAGCACTTTGACATCTTTATGTGAAGATGCTGATTCAGAGGATATTCATCAAGCAAGTTCAGGATTACACTCCTATCGTGAATCACAAAATCTGGGGAATGATCGTCCGATGGATAAGATTGATGCTCGTTCAAATAGTTCATATCCTATGCATCCGTTTTCAGGTGATCATGGGCAGTTACCAGTTTCTGGAGCAGAATATATCCCACATGTTCTGGGGGATAAGTCTAGAGCTAGTGATACTACTTACATTGAGGGTCAGAGAGCACAGGGCATTGCATCTTGGGACAATACCATGGAACAGTCTGCAGGAGAGTATGCTGATCCTTCTCTTGTATCATCTACAACCATTCCATCAAGTGCAGTGGGAAACATCCTTGAAGAAAACCATACTGTTCCTGGCAAACTTTTAGGGCGTAAAAATGCCCTAACTGAAGAGGAAAGGGGCTCTCAGCCTGTCCAATCAAATTGGCAGATTCCTTTTGAAGACAATACAGGAGAATTGCCTAATTGGGGCTTCACCCAATCATTGGGTTTGGAATTTGGATCTGATTATGGTGCTAGTTTACTGGGGGATGTAACTAATAATGCAGGCCCAGAAATTGTTCCTGAGCTGTTCACTTTTAATGGTGAGTTAAAAGAGCAGTCTGTGCACCAAAACTTCTCAAAGCTGTATACACATGGGCAATCTCAACCTACACTGAAATCCAATTCTGAATATGAAGTTCCTGGTGAAGCAAGTATCAATTATGCCTTGACCATGAGGCGTGGATTATTGGATGGAGAGGAGAGCCTCAAGAAGGTTGATAGTTTCTCTAGGTGGATGACTAAAGAATTTGCAGGTGTGGATGATCTGCATATGCAGTCTTCCCCTGGTATTTCATGGAGCACAGATGAGTGTGGGGATGTGATAGATGATACCTCATTGAATCTGTCCCTGTCTCAAGACCAGCTGTTTAGCATAAATGATTTTTCTCCTAAATGGGCTTATGCTGAATCAGAAATTGAGGTGTTGATTGTTGGAACATTTTTGAAGAGTCAACCTGTGGTGGCAAAATGTAACTGGTCCTGTATGTTTGGGGAAGTGGAGGTTCCTGCTGAGGTTTTAGCTGATGGAATTCTGTGCTGTCAAGCTCCACCTCATAAGATTGGACGGGTTCCCTTCTATGTAACATGTTCCAATAGGTTTGCTTGTAGTGAAGTTCGGGAATTTGAGTACAGAGAGGGCTTTGATAGAAATATACAATTTGCAGATTGTTTTAACAATTCAACTGAAATGGTGCTTCATTTGCGACTGGTGGGGTTACTTTCTTTAAACTCAGTACGCACTTCAAATCAAGTGTTTGAGGGTGATATGGATAAAAGAAGCTTAATATTCAAGCTTATTTCACTGAAAGAGGAAGAGGAATATTCAAGTAAGGAAGAGACAACTGCAGAGATGGATATATCAAAACACAAGTTGAAGGAGCTTATGTTTCACAAGCAGGTTAAGGAGAAGTTGTACTCATGGCTTCTTCACAAAGTTACTGAAACTGGTAAAGGGCCTCTTGTATTAGATGAAGAAGGGCAAGGCGTGTTACACTTAATTGCTGCTCTTGGTTATGATTGGGCCATAAATCCAATCATAACTGCTGGAGTCAATATCAACTTCCGTGATGTGAATGGATGGACAGCTCTACACTGGGCTGCATTCTGTGGCCGAGAGCGAACAGTTGCTGTCCTTGTCTCCATGGGTGCAGCAGCTGGAGCATGGACAGATCCATGTCCAGAATTTCCTTCGGGTAGATCACCTGCAGATCTTGCTTCTAGCAAAGGCCATAAAGGAATCTCTGGTTTTCTTGCTGAGTCATTATTAACTGGCCACCTTGAATCACTCACAATGGATGAAAATAAAGATGGTAGGAAAGAAACTTCAGGAACGAAAGTAGTGCAAACAGCTTCAGAGCGAACTGCGACACCTGTGCTTTATGGTGATATACCAGATGCTATCTGCCTTAAGGATTCTCTTAATGCTGTCCGTAATGCTACACAAGCTGCTGATCGTATATATCAAGTATTCAGAATGCAGTCATTTCAGAGGAAGCAGTTTGCTCAGTATGAAGATGATGAATTTGGATTGTCAGATCAACAAGCTCTTTCTCTCCTAGCTTCTAAGACGTGCAAATCTGGTCAAGGAGAGGGTTTAGCCAATGCTGCTGCAATACAAATACAGAAAAAGTTTCGTGGTTGGACGAAGAGAAAAGAATTCTTGATCATTCGCCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTCAGAAAGCAGTATAAACCAATCATTTGGTCCGTGGGAATCCTGGAAAAGGTCATATTACGCTGGAGACGCAAAGGCAGTGGCTTACGTGGATTTCGACCGGCTGCCCTGAACAAGGTCCCTGAACAACCAAGCGAATCTCCGAAAGAGGATGACTATGATTATCTCAAGGAAGGAAGGAAGCAGAGTGAAGTAAAGTTCAAAAAGGCCCTTTCACGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGGGTGCTAAATGTAGTTGAGGACTTCCGTCAAACCAAGGGAGGTAATTTGAATTTGATAAATTCGGAAGAGACAGTTGATGGTGTGGAGGATTTGATTGATATTGACATGCTTTTAGATGATGAAAATTTCTTACCTATAGCATTCGATTGA
Predicted protein sequences of Glyma.05G117000
>Glyma.05g117000.1.p sequence-type=predicted peptide transcript=Glyma.05g117000.1 locus=Glyma.05g117000 ID=Glyma.05g117000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAERSCFGLGPRLDLQQLQLEAQHRWLRPAEICEILRNYQMFQITSEPPNGPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLDVKVNKTNVGGKTYSDEVTSDSQKSSSLSSGFPRNYGSVPSGSTDSMSPTSTLTSLCEDADSEDIHQASSGLHSYRESQNLGNDRPMDKIDARSNSSYPMHPFSGDHGQLPVSGAEYIPHVLGDKSRASDTTYIEGQRAQGIASWDNTMEQSAGEYADPSLVSSTTIPSSAVGNILEENHTVPGKLLGRKNALTEEERGSQPVQSNWQIPFEDNTGELPNWGFTQSLGLEFGSDYGASLLGDVTNNAGPEIVPELFTFNGELKEQSVHQNFSKLYTHGQSQPTLKSNSEYEVPGEASINYALTMRRGLLDGEESLKKVDSFSRWMTKEFAGVDDLHMQSSPGISWSTDECGDVIDDTSLNLSLSQDQLFSINDFSPKWAYAESEIEVLIVGTFLKSQPVVAKCNWSCMFGEVEVPAEVLADGILCCQAPPHKIGRVPFYVTCSNRFACSEVREFEYREGFDRNIQFADCFNNSTEMVLHLRLVGLLSLNSVRTSNQVFEGDMDKRSLIFKLISLKEEEEYSSKEETTAEMDISKHKLKELMFHKQVKEKLYSWLLHKVTETGKGPLVLDEEGQGVLHLIAALGYDWAINPIITAGVNINFRDVNGWTALHWAAFCGRERTVAVLVSMGAAAGAWTDPCPEFPSGRSPADLASSKGHKGISGFLAESLLTGHLESLTMDENKDGRKETSGTKVVQTASERTATPVLYGDIPDAICLKDSLNAVRNATQAADRIYQVFRMQSFQRKQFAQYEDDEFGLSDQQALSLLASKTCKSGQGEGLANAAAIQIQKKFRGWTKRKEFLIIRQRIVKIQAHVRGHQVRKQYKPIIWSVGILEKVILRWRRKGSGLRGFRPAALNKVPEQPSESPKEDDYDYLKEGRKQSEVKFKKALSRVKSMVQYPEARAQYRRVLNVVEDFRQTKGGNLNLINSEETVDGVEDLIDIDMLLDDENFLPIAFD*






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