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Report for Sequence Feature Glyma.05G116400

Feature Type:gene_model
Chromosome:Gm05
Start:30923908
stop:30924846
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05G116400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G77440.1AT 20S proteasome beta subunit C2 JGI N/AIEA
GO:0051603GO-bp proteolysis involved in cellular protein catabolic process EnsemblGenomesN/AIEA
GO:0051603GO-bp proteolysis involved in cellular protein catabolic process JGI N/AIEA
GO:0005839GO-cc proteasome core complex EnsemblGenomesN/AIEA
GO:0005839GO-cc proteasome core complex JGI N/AIEA
GO:0004298GO-mf threonine-type endopeptidase activity EnsemblGenomesN/AIEA
GO:0004298GO-mf threonine-type endopeptidase activity JGI N/AIEA
PTHR11599Panther PROTEASOME SUBUNIT ALPHA/BETA JGI N/AIEA
PTHR11599:SF7Panther JGI N/AIEA
PF00227PFAM Proteasome subunit JGI N/AIEA

Expression Patterns of Glyma.05G116400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05G116400 not represented in the dataset
Glyma.05G116400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.



Coding sequences of Glyma.05G116400
>Glyma.05g116400.1 sequence-type=CDS polypeptide=Glyma.05g116400.1.p locus=Glyma.05g116400 ID=Glyma.05g116400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGCCTTTTATGCAAGATTATTCTTCCCTTATAGTAAATAACATGGAGCTTGCAAAAGATTTTGTTGTTTCTGGGACTGCATCTGAGTCTCTGTATAGTGCTTCTGAGGCAATGTTTAAGCCTGACATGGTAGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGTGTAA
Predicted protein sequences of Glyma.05G116400
>Glyma.05g116400.1.p sequence-type=predicted peptide transcript=Glyma.05g116400.1 locus=Glyma.05g116400 ID=Glyma.05g116400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVPFMQDYSSLIVNNMELAKDFVVSGTASESLYSASEAMFKPDMVEPEELFETISQALLSSVDRDCLSGWGGHVYVV*






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