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Report for Sequence Feature Glyma.05G104500

Feature Type:gene_model
Chromosome:Gm05
Start:27791015
stop:27791373
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05G104500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G21160.1AT alpha-mannosidase 2 JGI N/AIEA
GO:0006491GO-bp N-glycan processing EnsemblGenomesN/AIEA
GO:0000139GO-cc Golgi membrane EnsemblGenomesN/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004571GO-mf mannosyl-oligosaccharide 1,2-alpha-mannosidase activity EnsemblGenomesN/AIEA
GO:0004571GO-mf mannosyl-oligosaccharide 1,2-alpha-mannosidase activity JGI N/AIEA
GO:0005509GO-mf calcium ion binding EnsemblGenomesN/AIEA
GO:0005509GO-mf calcium ion binding JGI N/AIEA
PTHR11742Panther MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED JGI N/AIEA
PF01532PFAM Glycosyl hydrolase family 47 JGI N/AIEA
GN7V-60021SoyCyc9-rxn Man8GlcNAc2 isomer 8A1,2,3B1,3 1,2-α-mannosidase Plant Metabolic Network ISS

Expression Patterns of Glyma.05G104500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05G104500 not represented in the dataset
Glyma.05G104500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.05G104500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma05g22295 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.05G104500
>Glyma.05g104500.1 sequence-type=CDS polypeptide=Glyma.05g104500.1.p locus=Glyma.05g104500 ID=Glyma.05g104500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCATCCTATTGTTCAGCTTGCATGGACTTGTTACAATTTCTACCAATTAACACCAACTAAATTGGCAGGAGAGAACTATTACTTTCGCAATGGACATGATATGAGTGTTGGTACCTCGTGGAATATCCAAAGGCCTGAAACAATTGAGTCTCTATTCTACCTTTGGCGTTTCACTGGAAACAAAACATACCAAGAATGGGGTTGGAATATTTTCCAAGCATTTGAAAACAATTCTCGGATTGAGACAGGATATGTTGGACTCAAAGATGTAAGAAATTCATAA
Predicted protein sequences of Glyma.05G104500
>Glyma.05g104500.1.p sequence-type=predicted peptide transcript=Glyma.05g104500.1 locus=Glyma.05g104500 ID=Glyma.05g104500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHPIVQLAWTCYNFYQLTPTKLAGENYYFRNGHDMSVGTSWNIQRPETIESLFYLWRFTGNKTYQEWGWNIFQAFENNSRIETGYVGLKDVRNS*






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