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Report for Sequence Feature Glyma.05G089100

Feature Type:gene_model
Chromosome:Gm05
Start:19451858
stop:19456332
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05G089100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G27740.1AT ATPase family associated with various cellular activities (AAA) JGI N/AIEA
GO:0006260GO-bp DNA replication EnsemblGenomesN/AIEA
GO:0006260GO-bp DNA replication JGI N/AIEA
GO:0009360GO-cc DNA polymerase III complex JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003887GO-mf DNA-directed DNA polymerase activity JGI N/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG2035 KOG Replication factor C, subunit RFC3 JGI N/AIEA
PTHR11669Panther REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT JGI N/AIEA
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI N/AIEA
PF10424PFAM JGI N/AIEA

Expression Patterns of Glyma.05G089100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05G089100 not represented in the dataset
Glyma.05G089100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.05G089100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g089100 Wm82.a4.v1ISS As supplied by JGI


Transcripts of Glyma.05G089100
>Glyma.05g089100.2 sequence-type=transcript locus=Glyma.05g089100 ID=Glyma.05g089100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
aaaaataagagcaggccagggtatataaagcctcccctttcccgccattgcagaggtgtattttgtgctgtgccccttctcagcactcagcagcgataacagttgaagacacagaaaacaagcaagagaggcagctgaagatgttgtgggtggacaaatatcgtcccaaaaccctcgaccaggttatggtccacaccgacatcgctcataatctcaagaaattggtaacggaacaggattccccccatttactcttctatggcccatctggctctggcaagaaaaccctaatcatggctcttctccgccaaatgtttggacctggtgctgaaaaggtgaaggtggaaaataggacctggaaaatcgacgctgggagtagatctcttgatttagagctgacaacattatcaagtgccaatcacattgaaatgagtccgagtgatgcagggtttcaggatagatacattgttcaggaagtaatcaaagaaatggctaagaatagacccattgatactaaggggaagaaaggatttaaagtacttgtgctcaatgatgttgacaaactctctagagaagcccaacactctctccgcagaacaatggagaaatacagtgcttattgcagattaattctatgttgcaatagttcttctagagtcacagaagcaatccgctctcgatgtctcaatgtgcgaataaatgcaccaagtgaagaacagattgttcaagttttagaattcattggtaagaaagaaggactgcaacttcctcctggttttgctgctcgcattgcagagaaatcaaatcggaatttaaggagggccatattgtcgtttgagacttgtcgtgtcctacagtatcctttcactaacaaacaagcaattcctccaatggactgggaagagtatatttctgagattgcatctgacataatgaaggaacagagcccaaaaaggttgtttcaagttcgaggaaagctctatgagctgctaatcaattgcattcctccggagatcattttaaagaggcttctttatgagctattgaggaaactggatgcagaactaaagcatgaagtatgtcattgggctgcatattatgatgcgtctcggacagaaggcgatctttcacattgaagcatttgtggccaagttcatgagcatttataaatccttccttattgcaacattcggctgaaggtcagatgatggcagtttgcttttccatgattcaacgtgttaaatgaattatgtactggaaattaattctaaaataaatggagttttttcatgttggttttctcttcatgtatgcatcaattgcgacagaatgatgtttcgtttgtaaaggtgttgctttattaaattgcgtagacttcgcttgatgcttgatcccctgcgcaacccaagattaagtatatgaacaatttaattttagaatgatggtttgtattattgaattcgaaatttgactcaaataattgaatgaaatttatgcaccagtataaatatttgcgat
Coding sequences of Glyma.05G089100
>Glyma.05g089100.1 sequence-type=CDS polypeptide=Glyma.05g089100.1.p locus=Glyma.05g089100 ID=Glyma.05g089100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGTGGGTGGACAAATATCGTCCCAAAACCCTCGACCAGGTTATGGTCCACACCGACATCGCTCATAATCTCAAGAAATTGGTAACGGAACAGGATTCCCCCCATTTACTCTTCTATGGCCCATCTGGCTCTGGCAAGAAAACCCTAATCATGGCTCTTCTCCGCCAAATGTTTGGACCTGGTGCTGAAAAGGTGAAGGTGGAAAATAGGACCTGGAAAATCGACGCTGGGAGTAGATCTCTTGATTTAGAGCTGACAACATTATCAAGTGCCAATCACATTGAAATGAGTCCGAGTGATGCAGGGTTTCAGGATAGATACATTGTTCAGGAAGTAATCAAAGAAATGGCTAAGAATAGACCCATTGATACTAAGGGGAAGAAAGGATTTAAAGTACTTGTGCTCAATGATGTTGACAAACTCTCTAGAGAAGCCCAACACTCTCTCCGCAGAACAATGGAGAAATACAGTGCTTATTGCAGATTAATTCTATGTTGCAATAGTTCTTCTAGAGTCACAGAAGCAATCCGCTCTCGATGTCTCAATGTGCGAATAAATGCACCAAGTGAAGAACAGATTGTTCAAGTTTTAGAATTCATTGGTAAGAAAGAAGGACTGCAACTTCCTCCTGGTTTTGCTGCTCGCATTGCAGAGAAATCAAATCGGAATTTAAGGAGGGCCATATTGTCGTTTGAGACTTGTCGTGTCCTACAGTATCCTTTCACTAACAAACAAGCAATTCCTCCAATGGACTGGGAAGAGTATATTTCTGAGATTGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGGTTGTTTCAAGTTCGAGGAAAGCTCTATGAGCTGCTAATCAATTGCATTCCTCCGGAGATCATTTTAAAGAGGCTTCTTTATGAGCTATTGAGGAAACTGGATGCAGAACTAAAGCATGAAGTATGTCATTGGGCTGCATATTATGAATACAGGATGCGTCTCGGACAGAAGGCGATCTTTCACATTGAAGCATTTGTGGCCAAGTTCATGAGCATTTATAAATCCTTCCTTATTGCAACATTCGGCTGA

>Glyma.05g089100.2 sequence-type=CDS polypeptide=Glyma.05g089100.2.p locus=Glyma.05g089100 ID=Glyma.05g089100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGTGGGTGGACAAATATCGTCCCAAAACCCTCGACCAGGTTATGGTCCACACCGACATCGCTCATAATCTCAAGAAATTGGTAACGGAACAGGATTCCCCCCATTTACTCTTCTATGGCCCATCTGGCTCTGGCAAGAAAACCCTAATCATGGCTCTTCTCCGCCAAATGTTTGGACCTGGTGCTGAAAAGGTGAAGGTGGAAAATAGGACCTGGAAAATCGACGCTGGGAGTAGATCTCTTGATTTAGAGCTGACAACATTATCAAGTGCCAATCACATTGAAATGAGTCCGAGTGATGCAGGGTTTCAGGATAGATACATTGTTCAGGAAGTAATCAAAGAAATGGCTAAGAATAGACCCATTGATACTAAGGGGAAGAAAGGATTTAAAGTACTTGTGCTCAATGATGTTGACAAACTCTCTAGAGAAGCCCAACACTCTCTCCGCAGAACAATGGAGAAATACAGTGCTTATTGCAGATTAATTCTATGTTGCAATAGTTCTTCTAGAGTCACAGAAGCAATCCGCTCTCGATGTCTCAATGTGCGAATAAATGCACCAAGTGAAGAACAGATTGTTCAAGTTTTAGAATTCATTGGTAAGAAAGAAGGACTGCAACTTCCTCCTGGTTTTGCTGCTCGCATTGCAGAGAAATCAAATCGGAATTTAAGGAGGGCCATATTGTCGTTTGAGACTTGTCGTGTCCTACAGTATCCTTTCACTAACAAACAAGCAATTCCTCCAATGGACTGGGAAGAGTATATTTCTGAGATTGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGGTTGTTTCAAGTTCGAGGAAAGCTCTATGAGCTGCTAATCAATTGCATTCCTCCGGAGATCATTTTAAAGAGGCTTCTTTATGAGCTATTGAGGAAACTGGATGCAGAACTAAAGCATGAAGTATGTCATTGGGCTGCATATTATGATGCGTCTCGGACAGAAGGCGATCTTTCACATTGA
Predicted protein sequences of Glyma.05G089100
>Glyma.05g089100.1.p sequence-type=predicted peptide transcript=Glyma.05g089100.1 locus=Glyma.05g089100 ID=Glyma.05g089100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLWVDKYRPKTLDQVMVHTDIAHNLKKLVTEQDSPHLLFYGPSGSGKKTLIMALLRQMFGPGAEKVKVENRTWKIDAGSRSLDLELTTLSSANHIEMSPSDAGFQDRYIVQEVIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQIVQVLEFIGKKEGLQLPPGFAARIAEKSNRNLRRAILSFETCRVLQYPFTNKQAIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYELLRKLDAELKHEVCHWAAYYEYRMRLGQKAIFHIEAFVAKFMSIYKSFLIATFG*

>Glyma.05g089100.2.p sequence-type=predicted peptide transcript=Glyma.05g089100.2 locus=Glyma.05g089100 ID=Glyma.05g089100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLWVDKYRPKTLDQVMVHTDIAHNLKKLVTEQDSPHLLFYGPSGSGKKTLIMALLRQMFGPGAEKVKVENRTWKIDAGSRSLDLELTTLSSANHIEMSPSDAGFQDRYIVQEVIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQIVQVLEFIGKKEGLQLPPGFAARIAEKSNRNLRRAILSFETCRVLQYPFTNKQAIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYELLRKLDAELKHEVCHWAAYYDASRTEGDLSH*






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