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Report for Sequence Feature Glyma.05G078200

Feature Type:gene_model
Chromosome:Gm05
Start:10441958
stop:10443511
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05G078200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
ATCG00800.1AT structural constituent of ribosome JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome JGI N/AIEA
GO:0015935GO-cc small ribosomal subunit EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
PF00189PFAM Ribosomal protein S3, C-terminal domain JGI N/AIEA

Expression Patterns of Glyma.05G078200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05G078200 not represented in the dataset
Glyma.05G078200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.



Coding sequences of Glyma.05G078200
>Glyma.05g078200.1 sequence-type=CDS polypeptide=Glyma.05g078200.1.p locus=Glyma.05g078200 ID=Glyma.05g078200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACAAAATATGTAAGGAAAAAGAAAGAGGTAAAAATCATCAAAAGGAACATATGCCAAAATTTGAGTTCAGGTGGACAGGACATATCGATGGAAAAGAAATTGCACTTGTTGAGTGGATCAGAGAAGGTAGGGTTCCTCTACAAGCCATTCAAGCTAAAATTGATTGTTGTTACTATACAGTTCAAGCTATTTATGGGGTTTTAGGGATAAAAAATTTGGACATTATCTAA
Predicted protein sequences of Glyma.05G078200
>Glyma.05g078200.1.p sequence-type=predicted peptide transcript=Glyma.05g078200.1 locus=Glyma.05g078200 ID=Glyma.05g078200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDKICKEKERGKNHQKEHMPKFEFRWTGHIDGKEIALVEWIREGRVPLQAIQAKIDCCYYTVQAIYGVLGIKNLDII*






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