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Report for Sequence Feature Glyma.05G052900

Feature Type:gene_model
Chromosome:Gm05
Start:4737853
stop:4741543
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.05G052900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G62850.2AT Class I peptide chain release factor JGI N/AIEA
GO:0006415GO-bp translational termination EnsemblGenomesN/AIEA
GO:0006415GO-bp translational termination JGI N/AIEA
GO:0070126GO-bp mitochondrial translational termination EnsemblGenomesN/AIEA
GO:0072344GO-bp rescue of stalled ribosome EnsemblGenomesN/AIEA
GO:0005762GO-cc mitochondrial large ribosomal subunit EnsemblGenomesN/AIEA
GO:0003747GO-mf translation release factor activity EnsemblGenomesN/AIEA
GO:0003747GO-mf translation release factor activity JGI N/AIEA
GO:0004045GO-mf aminoacyl-tRNA hydrolase activity EnsemblGenomesN/AIEA
GO:0016150GO-mf translation release factor activity, codon nonspecific EnsemblGenomesN/AIEA
KOG3429 KOG Predicted peptidyl-tRNA hydrolase JGI N/AIEA
PTHR11075Panther PEPTIDE CHAIN RELEASE FACTOR JGI N/AIEA
PTHR11075:SF12Panther JGI N/AIEA
PF00472PFAM RF-1 domain JGI N/AIEA

Expression Patterns of Glyma.05G052900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05G052900 not represented in the dataset
Glyma.05G052900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.05G052900
ParalogEvidenceComments
Glyma.17g135200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.05G052900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.05g052900 Wm82.a4.v1ISS As supplied by JGI
Glyma05g03930 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.05G052900
>Glyma.05g052900.2 sequence-type=transcript locus=Glyma.05g052900 ID=Glyma.05g052900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGTCGAATACCATAACGCAAATTGAAGACGAAGCAGGAACCACAATCTGGGTTGATCTATGAGTACCGGCACCACTAGAATGCTAGTGAAGGAGATGTTGCAACTCTCTTCTTCCACACTTCACTTCTCTTCTGCGTTTCGCGCCCTTTCTCCTCCTTTGCCATTCTCGATTCAATTGCGACGCTCGCGCCGCCCTGCAATTCGATGCGCTTCCTCAGACTCCGACAAAGTATCGTCTCGGCTGTCGCAGGTTCAGCACCTTCTTCAACAGGCCGAACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAGATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATGTCAATAAAGTGAACACTAAGGTGGACATGCGCTTCAACGTTAAAAATGCATATTGGTTAAGTGACAGGGTCAGGGAGAAGATTTTGCAAACGGAGAAAAACCGTATTAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAAACTAGAACGCAGAAGGATAACATTGAGGATGCTTTGGCAAAGCTTCAGGAAATCATTGATGCAGCATCTCATGTCCCACCACCTCCCTCAGAAGATCAAAAGAAGAAAATTGCAAAGATAATGATGAAGGGCATGTGACTGACAGCTGTTAATCAAATTTGCACTTTTGAAGGGCTGCCATAGGAGAACAGAAACGCCTCAAAAGCAAGAAGGTGCTTTCAGATAAGAAGGCGTTCAGGAGAAGTAAAAATAGCTGGGACTAATACGGTGTTGTCCAGAATCTTGAAACTGTTTTATGATTTTTGACGCAGAACCACAGTCCTCTGAATTCTAATACTACCATATTGGATACACACAGTAGATGAATGGTTGAATATAACCGTGAATTCGAGTAGCATAGCCCAACAAGCAACCAACCCACTGGATGGACCTCAATGGTGGTTAGTTAGCCAAAATTGTGATGTAGCTAGGATCTAAACGAATACGATATTTTCAATTAGAAATATCATATATTGGTTGAATCTGTAGTGTTTTTCTTTGTCAGCTTTTTGCCCTTTTAATGCGCCCTTGGCACGTGTCCAGATTGATGGATCTATATAGGCATTGAATGTCAACAACCCTGGGAACGTGCTTCACGTAAA

>Glyma.05g052900.3 sequence-type=transcript locus=Glyma.05g052900 ID=Glyma.05g052900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGTCGAATACCATAACGCAAATTGAAGACGAAGCAGGAACCACAATCTGGGTTGATCTATGAGTACCGGCACCACTAGAATGCTAGTGAAGGAGATGTTGCAACTCTCTTCTTCCACACTTCACTTCTCTTCTGCGTTTCGCGCCCTTTCTCCTCCTTTGCCATTCTCGATTCAATTGCGACGCTCGCGCCGCCCTGCAATTCGATGCGCTTCCTCAGACTCCGACAAAGTATCGTCTCGGCTGTCGCAGGTTCAGCACCTTCTTCAACAGGCCGAACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAGATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATGTCAATAAAGTGAACACTAAGGTGGACATGCGCTTCAACGTTAAAAATGCATATTGGTTAAGTGACAGGGTCAGGGAGAAGATTTTGCAAACGGAGAAAAACCGTATTAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAAACTAGAACGCAGAAGGATAACATTGAGGATGCTTTGGCAAAGCTTCAGATAAACAAACCGGTGGAAGAATGCAGCTTAGGATGGTGACTTGGTGGTAGACATATCTCTTCCTCATTTCTGTATTCTTGTATTGTACTCAGACATTATAATTCAAATTTGAAGATTTCTGTTGTTGGCTATTTTTTTTTATTTTCTTATGAGTTAGAGTAGCATCTTAATGGAAAATGGAATATATCTTGGAGGAGTTTGTACAGTGGTTCCTTATTGTCTTCTCCGCTACTCATTGGTTGCTTTCTTCTTTATCATTGAGTTGGTTGATTGTCATATCCACATTTTGGATCGTTCATTCTCAACATAGGTCATTTGTGCCATAATAGAAAAAAATAACAGAGAAAAGAAAGGGGAGAAGAATCAGTTCCATTAACCCCAATGAATCAGTGGTTACAATCCTGTATTTATAAACTGATCAGTTAGaacaactaactaactctaactgacttagtaactaactcttaactaaataagctaacctaactCAGGTTATAAACTACCCAGGACTGCAGTAGAATAACTGCATGTCCTTTACAGTACTCCAATATTCCAAAATGCCCATAGTAGTGTTTCTATTTTTAGACCTTATTGGAGCATAGGACAGCGACTTTACTCTGCTTCTGCATATGTGACCATTCTCTGCTTGAGTTTGATGAAGGCTGTGCATTTGAAGGAGGTGGCTACTTGAGATAGAGATTGATTGGGTGATTTTTTCTTAAAACAAAACCTGACTGCTGCATTGTGAAAGCATGTCTATCACTGGTCCATGGTACTTGTTTGGATCCAGATAAGGACTAATGGGAAGGAAAATGTCTTAGTTTTATTGCAATATACACCAAATATTTTGTATGAAACAACCATGCATGCTAGTGATTCCCTTTAAAAATATTGGTTAGGGTCATCTATGGTATGATGTGTTTATTTGGATATTAGATTTAAGTTATCTAATATTCCTTTTTCCCCCTTTTCAACAACATAAATTGAGTTCATTCACTTCTTTTCTTGTTCCTAAAAACTGGCTTTTACCTAGCAATGGTGCTTTTCTGTTTATTTAATGGCAAAAAATAGGAAATCATTGATGCAGCATCTCATGTCCCACCACCTCCCTCAGAAGATCAAAAGAAGAAAATTGCAAAGATAATGATGAAGGGCATGTGACTGACAGCTGTTAATCAAATTTGCACTTTT
Coding sequences of Glyma.05G052900
>Glyma.05g052900.1 sequence-type=CDS polypeptide=Glyma.05g052900.1.p locus=Glyma.05g052900 ID=Glyma.05g052900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTACCGGCACCACTAGAATGCTAGTGAAGGAGATGTTGCAACTCTCTTCTTCCACACTTCACTTCTCTTCTGCGTTTCGCGCCCTTTCTCCTCCTTTGCCATTCTCGATTCAATTGCGACGCTCGCGCCGCCCTGCAATTCGATGCGCTTCCTCAGACTCCGACAAAGTATCGTCTCGGCTGTCGCAGGTTCAGCACCTTCTTCAACAGGCCGAACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAGATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATGTCAATAAAGTGAACACTAAGGTGGACATGCGCTTCAACGTTAAAAATGCATATTGGTTAAGTGACAGGGTCAGGGAGAAGATTTTGCAAACGGAGAAAAACCGTATTAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAAACTAGAACGCAGAAGGATAACATTGAGGATGCTTTGGCAAAGCTTCAGGAAATCATTGATGCAGCATCTCATGTCCCACCACCTCCCTCAGAAGATCAAAAGAAGAAAATTGCAAAGATGGCTGCCATAGGAGAACAGAAACGCCTCAAAAGCAAGAAGGTGCTTTCAGATAAGAAGGCGTTCAGGAGAAGTAAAAATAGCTGGGACTAA

>Glyma.05g052900.2 sequence-type=CDS polypeptide=Glyma.05g052900.2.p locus=Glyma.05g052900 ID=Glyma.05g052900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTACCGGCACCACTAGAATGCTAGTGAAGGAGATGTTGCAACTCTCTTCTTCCACACTTCACTTCTCTTCTGCGTTTCGCGCCCTTTCTCCTCCTTTGCCATTCTCGATTCAATTGCGACGCTCGCGCCGCCCTGCAATTCGATGCGCTTCCTCAGACTCCGACAAAGTATCGTCTCGGCTGTCGCAGGTTCAGCACCTTCTTCAACAGGCCGAACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAGATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATGTCAATAAAGTGAACACTAAGGTGGACATGCGCTTCAACGTTAAAAATGCATATTGGTTAAGTGACAGGGTCAGGGAGAAGATTTTGCAAACGGAGAAAAACCGTATTAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAAACTAGAACGCAGAAGGATAACATTGAGGATGCTTTGGCAAAGCTTCAGGAAATCATTGATGCAGCATCTCATGTCCCACCACCTCCCTCAGAAGATCAAAAGAAGAAAATTGCAAAGATAATGATGAAGGGCATGTGA

>Glyma.05g052900.3 sequence-type=CDS polypeptide=Glyma.05g052900.3.p locus=Glyma.05g052900 ID=Glyma.05g052900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTACCGGCACCACTAGAATGCTAGTGAAGGAGATGTTGCAACTCTCTTCTTCCACACTTCACTTCTCTTCTGCGTTTCGCGCCCTTTCTCCTCCTTTGCCATTCTCGATTCAATTGCGACGCTCGCGCCGCCCTGCAATTCGATGCGCTTCCTCAGACTCCGACAAAGTATCGTCTCGGCTGTCGCAGGTTCAGCACCTTCTTCAACAGGCCGAACACCGTGCTCTCTCCGCCGACCAGGGCCCACCTCCTAAAATCACCTTAGATCATGTTACGGTGAGCTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATGTCAATAAAGTGAACACTAAGGTGGACATGCGCTTCAACGTTAAAAATGCATATTGGTTAAGTGACAGGGTCAGGGAGAAGATTTTGCAAACGGAGAAAAACCGTATTAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAAACTAGAACGCAGAAGGATAACATTGAGGATGCTTTGGCAAAGCTTCAGATAAACAAACCGGTGGAAGAATGCAGCTTAGGATGGTGA
Predicted protein sequences of Glyma.05G052900
>Glyma.05g052900.1.p sequence-type=predicted peptide transcript=Glyma.05g052900.1 locus=Glyma.05g052900 ID=Glyma.05g052900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTGTTRMLVKEMLQLSSSTLHFSSAFRALSPPLPFSIQLRRSRRPAIRCASSDSDKVSSRLSQVQHLLQQAEHRALSADQGPPPKITLDHVTVSFARSGGPGGQNVNKVNTKVDMRFNVKNAYWLSDRVREKILQTEKNRINKDGELVISSTKTRTQKDNIEDALAKLQEIIDAASHVPPPPSEDQKKKIAKMAAIGEQKRLKSKKVLSDKKAFRRSKNSWD*

>Glyma.05g052900.2.p sequence-type=predicted peptide transcript=Glyma.05g052900.2 locus=Glyma.05g052900 ID=Glyma.05g052900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTGTTRMLVKEMLQLSSSTLHFSSAFRALSPPLPFSIQLRRSRRPAIRCASSDSDKVSSRLSQVQHLLQQAEHRALSADQGPPPKITLDHVTVSFARSGGPGGQNVNKVNTKVDMRFNVKNAYWLSDRVREKILQTEKNRINKDGELVISSTKTRTQKDNIEDALAKLQEIIDAASHVPPPPSEDQKKKIAKIMMKGM*

>Glyma.05g052900.3.p sequence-type=predicted peptide transcript=Glyma.05g052900.3 locus=Glyma.05g052900 ID=Glyma.05g052900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTGTTRMLVKEMLQLSSSTLHFSSAFRALSPPLPFSIQLRRSRRPAIRCASSDSDKVSSRLSQVQHLLQQAEHRALSADQGPPPKITLDHVTVSFARSGGPGGQNVNKVNTKVDMRFNVKNAYWLSDRVREKILQTEKNRINKDGELVISSTKTRTQKDNIEDALAKLQINKPVEECSLGW*






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