Glyma.05G031200

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.05G031200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.05G031200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.05G031200

Feature Type:	gene_model
Chromosome:	Gm05
Start:	2712680
stop:	2715373
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.05G031200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74790.1	AT	catalytics	JGI	N/A	IEA
GO:0005975	GO-bp	carbohydrate metabolic process	JGI	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0016901	GO-mf	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	JGI	N/A	IEA
GO:0048038	GO-mf	quinone binding	JGI	N/A	IEA
PTHR19328	Panther	PQQ OXIDOREDUCTASE-RELATED	JGI	N/A	IEA
PTHR19328:SF13	Panther	HIPL1 PROTEIN-RELATED	JGI	N/A	IEA
PF07995	PFAM	Glucose / Sorbosone dehydrogenase	JGI	N/A	IEA
GN7V-64609	SoyCyc9-rxn	Enzyme name not determined	Plant Metabolic Network		ISS

Expression Patterns of Glyma.05G031200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.05G031200 not represented in the dataset	Glyma.05G031200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.05G031200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g031200	Wm82.a4.v1	ISS	As supplied by JGI

Transcripts of Glyma.05G031200

Limit To All Plant Sequences

>Glyma.05g031200.2 sequence-type=transcript locus=Glyma.05g031200 ID=Glyma.05g031200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCATATGCTGGCCATTCAATACAATGGATTCCTTGGGAATCTTAAAGCACATTAATATTGTAAAGTTATTGAGTACTAATTATCATTTTTCCCTCACTCTTGAGAATGACATCTAACACAAATCTTCAGGTGCATCAGAAATGAGCAAACTTGGCCTTTGGGATAGCTACTCCATTTCTAAGGATAACCCATTTAGTGAAGACAAAAATTTGCATCCTGAAATAGGGGCCTTGGGATTAAGAAATCCATGGCGATGTAGTTTTGATTCACAAAGGCCTTCCTACTTTTTTTGTGCAGATGCTGGACAGGATTTTATTCATAAACTACTTCGAATACAAAATAAGCTAAGCTCTTCACAGCAAGGTCATCAATAGGCCTGTTTGTAGCGTGACTACATTACTGTTAACTTCCCTGCATAAATTCGAGGTGTTGATGAACTTGAAGACACAATAGAAAGACTGAAAGAGCATTGGAGAAATCAGAAGTCTACAAGCTGACATGACTAGAACTACAGAAAAAAGTTGAGTGAAATGTATTACATAATTCATTTGCAGGATCAGTTTGAGGAGGTGGATCTCATCACAAAGGGTGGAAACTATGGTTGGCGTGTTTATGAGGGACCCTATCTTTCCACTCTTACTGAGTCACCTGGTGGCAACACCTCCCTTAATTCCATAAATCCAATTCGCCCAATATTGGGACACAACCATTCTGAAGTAAACACGAATGAAGGATCCGCATCTAGCACTGGTGGTTATGTCAATCGATCTACCACTGATCCTTGCATGTATGGAAGGTAAAACAAGCTTGTGTTTCCCTTCATGGCCTTCAACTCATTTAAAATATTTAGTTGAAGAGTCTGTAGGAAAAACAGAAACTCTTCCGTCGAGGTACTTTTATACTGATCTTTATGCAGATGAAATATGGGCAGGCATCGAAGAGCCAGAAAATAGTGGAAATTTCACCACTAGCAAAATGCATTACAGTTGTGCACATGATTCTCCTATCCAATGTGACTCTGTACCCGAAAGCTCCCTTCCTGCTCTGGGCTACATCTATTCATTTGGTGAAGACAACAACAAAGATGTTTATATTCTTGCAAGCACTGGTGTTTACCGAGTTGCTCGTCCAAGTCATTGCAGTTACACTTGCTCACTGGCAAAGAAAAAGGCAACAACAACCACTCCATCTCATGCAAGCTGTTGTTGGAGTTACTTCTCTGGATATCTGTTTCTGCATATTTCATCCCTTTTGTTGCTTTTGATAGGTTTTATGTAGTGTTTGCTAATAATATAGTATACTGTAATCTTTGCACTTAACGTGTAGATAAGAGAATATTTAACTCACCGGTTCTCCTTTCTTTTCTACTTTTCAACTATTTTTGCTCTCCTTCTGCAGGATTAATTACTGAAAGACGAGTGTATTAAGATTCTAATTCTTCTGTCAACTCTTCTCCA

Coding sequences of Glyma.05G031200

Limit To All Plant Sequences

>Glyma.05g031200.1 sequence-type=CDS polypeptide=Glyma.05g031200.1.p locus=Glyma.05g031200 ID=Glyma.05g031200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGGCCACAGACACCGTACTACATAACAAACTCTTTGGACCTAGTGATGGATATTTATACTTCATGATGGGAGATGGTGGAGGTTTAGGTGCATCAGAAATGAGCAAACTTGGCCTTTGGGATAGCTACTCCATTTCTAAGGATAACCCATTTAGTGAAGACAAAAATTTGCATCCTGAAATAGGGGCCTTGGGATTAAGAAATCCATGGCGATGTAGTTTTGATTCACAAAGGCCTTCCTACTTTTTTTGTGCAGATGCTGGACAGGATCAGTTTGAGGAGGTGGATCTCATCACAAAGGGTGGAAACTATGGTTGGCGTGTTTATGAGGGACCCTATCTTTCCACTCTTACTGAGTCACCTGGTGGCAACACCTCCCTTAATTCCATAAATCCAATTCGCCCAATATTGGGACACAACCATTCTGAAGTAAACACGAATGAAGGATCCGCATCTAGCACTGGTGGTTATGTCAATCGATCTACCACTGATCCTTGCATGTATGGAAGGTACTTTTATACTGATCTTTATGCAGATGAAATATGGGCAGGCATCGAAGAGCCAGAAAATAGTGGAAATTTCACCACTAGCAAAATGCATTACAGTTGTGCACATGATTCTCCTATCCAATGTGACTCTGTACCCGAAAGCTCCCTTCCTGCTCTGGGCTACATCTATTCATTTGGTGAAGACAACAACAAAGATGTTTATATTCTTGCAAGCACTGGTGTTTACCGAGTTGCTCGTCCAAGTCATTGCAGTTACACTTGCTCACTGGCAAAGAAAAAGGCAACAACAACCACTCCATCTCATGCAAGCTGTTGTTGGAGTTACTTCTCTGGATATCTGTTTCTGCATATTTCATCCCTTTTGTTGCTTTTGATAGGTTTTATGTAG

>Glyma.05g031200.2 sequence-type=CDS polypeptide=Glyma.05g031200.2.p locus=Glyma.05g031200 ID=Glyma.05g031200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGGATCCGCATCTAGCACTGGTGGTTATGTCAATCGATCTACCACTGATCCTTGCATGTATGGAAGGTAAAACAAGCTTGTGTTTCCCTTCATGGCCTTCAACTCATTTAAAATATTTAGTTGAAGAGTCTGTAGGAAAAACAGAAACTCTTCCGTCGAGGTACTTTTATACTGATCTTTATGCAGATGAAATATGGGCAGGCATCGAAGAGCCAGAAAATAGTGGAAATTTCACCACTAGCAAAATGCATTACAGTTGTGCACATGATTCTCCTATCCAATGTGACTCTGTACCCGAAAGCTCCCTTCCTGCTCTGGGCTACATCTATTCATTTGGTGAAGACAACAACAAAGATGTTTATATTCTTGCAAGCACTGGTGTTTACCGAGTTGCTCGTCCAAGTCATTGCAGTTACACTTGCTCACTGGCAAAGAAAAAGGCAACAACAACCACTCCATCTCATGCAAGCTGTTGTTGGAGTTACTTCTCTGGATATCTGTTTCTGCATATTTCATCCCTTTTGTTGCTTTTGATAGGTTTTATGTAG

Predicted protein sequences of Glyma.05G031200

Limit To All Plant Sequences

>Glyma.05g031200.1.p sequence-type=predicted peptide transcript=Glyma.05g031200.1 locus=Glyma.05g031200 ID=Glyma.05g031200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLATDTVLHNKLFGPSDGYLYFMMGDGGGLGASEMSKLGLWDSYSISKDNPFSEDKNLHPEIGALGLRNPWRCSFDSQRPSYFFCADAGQDQFEEVDLITKGGNYGWRVYEGPYLSTLTESPGGNTSLNSINPIRPILGHNHSEVNTNEGSASSTGGYVNRSTTDPCMYGRYFYTDLYADEIWAGIEEPENSGNFTTSKMHYSCAHDSPIQCDSVPESSLPALGYIYSFGEDNNKDVYILASTGVYRVARPSHCSYTCSLAKKKATTTTPSHASCCWSYFSGYLFLHISSLLLLLIGFM*

>Glyma.05g031200.2.p sequence-type=predicted peptide transcript=Glyma.05g031200.2 locus=Glyma.05g031200 ID=Glyma.05g031200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKDPHLALVVMSIDLPLILACMEGKTSLCFPSWPSTHLKYLVEESVGKTETLPSRYFYTDLYADEIWAGIEEPENSGNFTTSKMHYSCAHDSPIQCDSVPESSLPALGYIYSFGEDNNKDVYILASTGVYRVARPSHCSYTCSLAKKKATTTTPSHASCCWSYFSGYLFLHISSLLLLLIGFM*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain