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Report for Sequence Feature Glyma.04g254900

Feature Type:gene_model
Chromosome:Gm04
Start:52147439
stop:52162179
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g254900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G09140.1AT MUTL-homologue 1 JGI N/AIEA
GO:0006298GO-bp mismatch repair EnsemblGenomesN/AIEA
GO:0006298GO-bp mismatch repair JGI N/AIEA
GO:0006312GO-bp mitotic recombination EnsemblGenomesN/AIEA
GO:0009555GO-bp pollen development EnsemblGenomesN/AIEA
GO:0009845GO-bp seed germination EnsemblGenomesN/AIEA
GO:0010154GO-bp fruit development EnsemblGenomesN/AIEA
GO:0048316GO-bp seed development EnsemblGenomesN/AIEA
GO:0000790GO-cc nuclear chromatin EnsemblGenomesN/AIEA
GO:0000795GO-cc synaptonemal complex EnsemblGenomesN/AIEA
GO:0005712GO-cc chiasma EnsemblGenomesN/AIEA
GO:0032300GO-cc mismatch repair complex EnsemblGenomesN/AIEA
GO:0032389GO-cc MutLalpha complex EnsemblGenomesN/AIEA
GO:0003697GO-mf single-stranded DNA binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016887GO-mf ATPase activity EnsemblGenomesN/AIEA
GO:0030983GO-mf mismatched DNA binding EnsemblGenomesN/AIEA
GO:0030983GO-mf mismatched DNA binding JGI N/AIEA
KOG1979 KOG DNA mismatch repair protein - MLH1 family JGI N/AIEA
PTHR10073Panther DNA MISMATCH REPAIR PROTEIN (MLH, PMS, MUTL) JGI N/AIEA
PTHR10073:SF11Panther JGI N/AIEA
PF01119PFAM DNA mismatch repair protein, C-terminal domain JGI N/AIEA
PF02518PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JGI N/AIEA

Expression Patterns of Glyma.04g254900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g254900 not represented in the dataset
Glyma.04g254900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g254900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g43420 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g254900
>Glyma.04g254900.1 sequence-type=CDS polypeptide=Glyma.04g254900.1.p locus=Glyma.04g254900 ID=Glyma.04g254900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGAGAGCGAGAATCAGAGGCGAATGGAGCCCCCTAAAATTCAGCGGCTGAGCGAGTCGGTGGTGAACCGAATCGCCGCCGGCGAGGTCATCCAACGCCCCGTCTCCGCCGTGAAGGAGCTCGTGGAGAACAGCCTCGACGCCGCCTCCTCCTCCGTCAGCCTCCTCATCAAGGATGGCGGCCTCAAACTCATCCAAGTCTCCGACGACGGCCACGGAATCCGTTTTGAGGACTTGCCCATACTCTGCGAGCGCCACACGACCTCCAAGCTGTCCTCGTTTGAGGACTTGCAGCGCATTAAGTCGATGGGCTTTCGCGGCGAGGCTCTCGCCAGCATGACCTACGTCGCTCACGTCACCGTCACCACCATTACCAAACCCCAATTGCACGGTTACAGGGTATCCTATAGAGATGGTGTCATGGAGCACCAACCCAGGCCATGTGCTGCTGTTAAAGGAACGCAGATAATGGTTGAAAATCTGTTCTATAACATGGCTGCAAGGAGGAAGACGCTGCAAAATTCTTCTGATGATTATTCAAAGATTGTAGACTTAGTAAGCCGGTTTGCTATTCATCATATTAATGTCAGTTTCTCGTGCAGAAAGCATGGAGCTGTTAGGGCTGATGTTCACACTGTGGCCATGTCTTCAAGGCTCGATGCCATCAAATCTGTCTATGGGGTCTCAGTTGCTCGCAATCTGATTGAAATTGAAGCCTCAGACAATGATCCATCTACTTCGGTTTTTGAGATGCATGGCTACATGTCCAATGCAAATTATGCTGCAAAGAAAATCACCATGGTGCTTTTCATCAATGATCGACTGGTTGAGTGTTCTGCATTGAAGAGGGCTATTGAAATTGTTTATGCAGCGACATTACCAAAAGCATCTAAGCCCTTTATATATATTTCAATTGTTTTACCACCAGAGAATATTGATGTCAATGTACATCCAACAAAGAGAGAGGTGAGCCTTTTAAATCAGGAAGTCATCATTGAGAAGATACAGTCTGTGGTTGAATCAACATTGAGGAGTTCCAACGAGGCACGGACATTTCAAGAACAATCAGCTGGGCAATCTTCATCGCCTCGTATTAATACAAGTAAGGAGGTTAACCTCAGCCCTATGCCAACAGGTTCAAGATTATTGAAAGTGCCGGTACATAAGTTGGTTAGAACAGATTCATTAGATCCTGCTGGAAGATTACATGCCTACACGCAAATTATGTCTGATAGACATCTTGAAAAGAGTGCTAGTTTGAATGCAATAAGGTCTTCGGTTAGACAAAGAAGGAACCCAAAAGATTCTTTAGAACTCACTAGTGTTCAAGAGCTTCTTGACAAGATCAATAGCAACTGTGACCCTGGCATGACAGACATCATAAGGCATTGCACATATGTTGGAATGGCAGATGATGTTTTTGCTTTGCTTCAGCATAATACTCGTCTTTATCTTGCAAATGTTGTAAACTTGAGCAAAGAACTTATGTATCAGCAAGTTCTTAGCCGTTTTGGCCATTTCAATGCCATTCAACTAAATGATCCAGTCCCCTTGAAAGACTTGATTATATTGGCTCTGAAGGAAGAGGATATAGATTCAGAATGTAATGATGATGACAGCTTAAAAGAGAAGATTGCAGAAATGAACACAGAATTGCTGAAACAAAAGGCAGAAATGCTGGAGGAGTATTTTGGCATTCATATTGATGAGCATGGAAATGTCTCTAGACTTCCTGTGATACTTGACCAGTACACACCTGACATGGATCATGTCCCTGAATTTGCTCTTTGTTTGGGCAATGATGTTGATTGGGAAGATGAAAAGAATTGCATTCAAGCAGTTTCAGCTGCTTTGGGAAACTTCTATGCTATGCATCCACTGATGTTGCCCAATCCGTCTGGTGAAGGTTTGCTTTTTTACAAGAAGAGAAAAATGATGGATGGTTATGCTGAAGAGAATACCTGTGATAATACTGGGAGTGACGTGATTGACAATAAAGTTGAGCATGAAATGTTTTCTGAAGCTGAGACTGCATGGGCCCAGCGTGAATGGTCAATACAACATGTGCTTTTTCCTTCCATGAGACTCTTTTTCAAACCACCTGCTTCTATGGCTACTGATGGAACCTTTGTTCAGGTAACTTCGCTGGAGAAACTGTATAAGATTTTTGAAAGATGCTAA
Predicted protein sequences of Glyma.04g254900
>Glyma.04g254900.1.p sequence-type=predicted peptide transcript=Glyma.04g254900.1 locus=Glyma.04g254900 ID=Glyma.04g254900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEESENQRRMEPPKIQRLSESVVNRIAAGEVIQRPVSAVKELVENSLDAASSSVSLLIKDGGLKLIQVSDDGHGIRFEDLPILCERHTTSKLSSFEDLQRIKSMGFRGEALASMTYVAHVTVTTITKPQLHGYRVSYRDGVMEHQPRPCAAVKGTQIMVENLFYNMAARRKTLQNSSDDYSKIVDLVSRFAIHHINVSFSCRKHGAVRADVHTVAMSSRLDAIKSVYGVSVARNLIEIEASDNDPSTSVFEMHGYMSNANYAAKKITMVLFINDRLVECSALKRAIEIVYAATLPKASKPFIYISIVLPPENIDVNVHPTKREVSLLNQEVIIEKIQSVVESTLRSSNEARTFQEQSAGQSSSPRINTSKEVNLSPMPTGSRLLKVPVHKLVRTDSLDPAGRLHAYTQIMSDRHLEKSASLNAIRSSVRQRRNPKDSLELTSVQELLDKINSNCDPGMTDIIRHCTYVGMADDVFALLQHNTRLYLANVVNLSKELMYQQVLSRFGHFNAIQLNDPVPLKDLIILALKEEDIDSECNDDDSLKEKIAEMNTELLKQKAEMLEEYFGIHIDEHGNVSRLPVILDQYTPDMDHVPEFALCLGNDVDWEDEKNCIQAVSAALGNFYAMHPLMLPNPSGEGLLFYKKRKMMDGYAEENTCDNTGSDVIDNKVEHEMFSEAETAWAQREWSIQHVLFPSMRLFFKPPASMATDGTFVQVTSLEKLYKIFERC*






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